BAC Information

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BAC

Clone NameB6Ng01-036C24
Chromosome6 (Build37)
Map Location 37,012,633 - 37,161,991
singlet/doubletdoublet
Overlap geneDgki
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, EG665024
Downstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C24.bB6Ng01-036C24.g
ACCDH864445DH864446
length5511,062
definitionDH864445|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C24, 5' end.DH864446|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,161,438 - 37,161,991)(37,012,633 - 37,013,694)
sequence
cttaattggattttgtttgccgatcttactttctcacattgtaagatttt
aataaatcattataatcattcccttctgtcttgcaaaaaataaccttcct
gacagttccaggatgactgtccccctcctgtgtctgcatcttgggattat
tagtgtagtttacaaatgaatcagaaaaggcctgtgcagccaagggtcta
tttccatcacttcccaggcgtgaactcagagcgtgcaaaaccaggaacct
gagaggtcacgctcggctgggagggcacagcagggcttggcacattatct
ccttcctcggttattgatgagctgtgtgctgtggaaatggggtgtgtgtg
tgttggggggcagatctcctatctgcttggttattaaagcctctgcagga
agcaggcttgtcggtgatctatgagcactggaggccgctgctttctcaac
accgattcttctatgtcagctatttgttgatgacaggggaaggtaggact
gtttattttgtgtaaatgctgtgctggatgaaggcttggttccaaagcac
c
gaattccatagccataaattcaggggttgctcatagcgcccgagtctgtg
atcagaccatgattgagagaattataaattgtggaatgcagagtcagaaa
aatgtcagaaaatcctatagagacatcgagaagaagcttaacgaagagag
gtgtggtatggcagagtagaatggctgtccaaatgggaatcctactgtct
gtctgtcatctatctgtctatccacctcatatctctttacatatgtgtgt
gtgtacttacatagtcatatgcacatacctatttcatattctaatgttct
tctatcacattactccaaaatatgaggtcaagaagatattcttaattgag
caagcatttaattagccatgatccagtgtaatgtctaaggatgactaaca
tgagatctaggtccacaacgagtatacttccccagaaaacgccaacatta
tataaaatgttgttgtggactctggaatagaaattcagtcatgtatatgc
ccgtaataaaaaaatagcctcctgttatcctacatgtttactctgacacg
tttcattcagcacaaacctagcatgctctaaacttggctcgccggcccaa
gaatattaaaaatacacagcgtggcaattttggccttgcttccacttttt
ctacagctctaaaccctcccacccaccttttaaaccagaaagataattcc
taccttcctcaggaatttcccccaaactaacaaaaggaaattgggctaaa
caagaaagccgtacccccccagatgagaattggggactaaaaagccgatt
catttggtattaaaaaaaaactgtgggtcctccagcaggcttggatgtaa
tggagggttataatcacagcctggccctttatactggcagacatcctcac
taaactgtgatgcttgcaatccttgctctctggcgactcctctcaggctt
cggagagagcggtaagcatccatattcgctcactgtgactctctagacgc
cgacggctgcctttataggggactatgccctggatgaggaggcagtgggg
ctttcatgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37161438_37161991
seq2: B6Ng01-036C24.b_43_598 (reverse)

seq1  GTGCTTT-GAACCAAGCCTTCATCCAGCACAGCATTTACACAAAATAAAC  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGGAACCAAGCCTTCATCCAGCACAGCATTTACACAAAATAAAC  50

seq1  AGTCCTACCTTCCCCTGTCATCAAC-AATAGCTGACATAGAAGAATCGGT  98
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCCTACCTTCCCCTGTCATCAACAAATAGCTGACATAGAAGAATCGGT  100

seq1  GTTGAGAAAGCAGCGGCCTCCAGTGCTCATAGATCACCGACAAGCCTGCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAAGCAGCGGCCTCCAGTGCTCATAGATCACCGACAAGCCTGCT  150

seq1  TCCTGCAGAGGCTTTAATAACCAAGCAGATAGGAGATCTGCCCCCCAACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGAGGCTTTAATAACCAAGCAGATAGGAGATCTGCCCCCCAACA  200

seq1  CACACACACCCCATTTCCACAGCACACAGCTCATCAATAACCGAGGAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCCCATTTCCACAGCACACAGCTCATCAATAACCGAGGAAGG  250

seq1  AGATAATGTGCCAAGCCCTGCTGTGCCCTCCCAGCCGAGCGTGACCTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGTGCCAAGCCCTGCTGTGCCCTCCCAGCCGAGCGTGACCTCTC  300

seq1  AGGTTCCTGGTTTTGCACGCTCTGAGTTCACGCCTGGGAAGTGATGGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGGTTTTGCACGCTCTGAGTTCACGCCTGGGAAGTGATGGAAA  350

seq1  TAGACCCTTGGCTGCACAGGCCTTTTCTGATTCATTTGTAAACTACACTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCTTGGCTGCACAGGCCTTTTCTGATTCATTTGTAAACTACACTA  400

seq1  ATAATCCCAAGATGCAGACACAGGAGGGGGACAGTCATCCTGGAACTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCAAGATGCAGACACAGGAGGGGGACAGTCATCCTGGAACTGTC  450

seq1  AGGAAGGTTATTTTTTGCAAGACAGAAGGGAATGATTATAATGATTTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTTATTTTTTGCAAGACAGAAGGGAATGATTATAATGATTTATT  500

seq1  AAAATCTTACAATGTGAGAAAGTAAGATCGGCAAACAAAATCCAATTAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTACAATGTGAGAAAGTAAGATCGGCAAACAAAATCCAATTAAG  550

seq1  GAATTC  554
      ||||||
seq2  GAATTC  556

seq1: chr6_37012633_37013694
seq2: B6Ng01-036C24.g_67_1128

seq1  GAATTCCATAGCCATAAATTCAGGGGTTGCTCATAGCGCCCGAGTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCCATAAATTCAGGGGTTGCTCATAGCGCCCGAGTCTGTG  50

seq1  ATCAGACCATGATTGAGAGAATTATAAATTGTGGAATGCAGAGTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCATGATTGAGAGAATTATAAATTGTGGAATGCAGAGTCAGAAA  100

seq1  AATGTCAGAAAATCCTATAGAGACATCGAGAAGAAGCTTAACGAAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGAAAATCCTATAGAGACATCGAGAAGAAGCTTAACGAAGAGAG  150

seq1  GTGTGGTATGGCAGAGTAGAATGGCTGTCCAAATGGGAATCCTACTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTATGGCAGAGTAGAATGGCTGTCCAAATGGGAATCCTACTGTCT  200

seq1  GTCTGTCATCTATCTGTCTATCCACCTCATATCTCTTTACATATGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATCTATCTGTCTATCCACCTCATATCTCTTTACATATGTGTGT  250

seq1  GTGTACTTACATAGTCATATGCACATACCTATTTCATATTCTAATGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTACATAGTCATATGCACATACCTATTTCATATTCTAATGTTCT  300

seq1  TCTATCACATTACTCCAAAATATGAGGTCAAGAAGATATTCTTAATTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCACATTACTCCAAAATATGAGGTCAAGAAGATATTCTTAATTGAG  350

seq1  CAAGCATTTAATTAGCCATGATCCAGTGTAATGTCTAAGGATGACTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTTAATTAGCCATGATCCAGTGTAATGTCTAAGGATGACTAACA  400

seq1  TGAGATCTAGGTCCACAACGAGTATACTTCCCCAGAAAACGCCAACATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTAGGTCCACAACGAGTATACTTCCCCAGAAAACGCCAACATTA  450

seq1  TATAAAATGTTGTTGTGGACTCTGGAATAGAAATTCAGTCATGTATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGTTGTTGTGGACTCTGGAATAGAAATTCAGTCATGTATATGC  500

seq1  CCGTAAT-AAAGAATAGCCTCCTGTTATCCTACATGTTTACTCTGACACG  549
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATAAAAAAATAGCCTCCTGTTATCCTACATGTTTACTCTGACACG  550

seq1  TTTCATTCAGCACAAACCTAGCATGCTCT-AACTTGGCTCGCCGGCCCAA  598
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCATTCAGCACAAACCTAGCATGCTCTAAACTTGGCTCGCCGGCCCAA  600

seq1  GAATA-TAAGAGTACACAGCGT-GCTATTTT-GTCTTGCTTCCTACTCTT  645
      ||||| ||| | |||||||||| || ||||| | ||||||||| ||| ||
seq2  GAATATTAAAAATACACAGCGTGGCAATTTTGGCCTTGCTTCC-ACTTTT  649

seq1  TCTACAGCTCTAAACC--TCCACCCACCTTTTAAA-CAGAAAGATAATCC  692
      ||||||||||||||||   |||||||||||||||| |||||||||||| |
seq2  TCTACAGCTCTAAACCCTCCCACCCACCTTTTAAACCAGAAAGATAATTC  699

seq1  CTA-CATCCTCAGGAAGTTCCCCCAGACTAACAAAAGGAGATTGGCTTAA  741
      ||| | |||||||||| |||||||| ||||||||||||| |||||  |||
seq2  CTACCTTCCTCAGGAATTTCCCCCAAACTAACAAAAGGAAATTGGGCTAA  749

seq1  ACAGGAAAGCCAGTAACCACCCAGAATGAG-ATTAGGGACTAAGATAGCA  790
      ||| ||||||| ||| || ||||| ||||| ||| |||||||| | ||| 
seq2  ACAAGAAAGCC-GTACCCCCCCAG-ATGAGAATTGGGGACTAA-AAAGCC  796

seq1  GATTCAATTTGTATTAAGAAAAAGACTGTGGCTCTCCAAGCAGGCTTGGA  840
      |||||| || ||||||| ||||| ||||||| ||  | ||||||||||||
seq2  GATTCATTTGGTATTAA-AAAAAAACTGTGGGTCCTCCAGCAGGCTTGGA  845

seq1  TGTAATGGA-GGTTATGACTCACAGCCT-GCCCTTTATACTGGCAGACAT  888
      ||||||||| |||||| | ||||||||| |||||||||||||||||||||
seq2  TGTAATGGAGGGTTAT-AATCACAGCCTGGCCCTTTATACTGGCAGACAT  894

seq1  CTTCACTAAACTGTGATGCTTGCAATCCTTGCTCTCTGTCGACTCCTCTC  938
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTCACTAAACTGTGATGCTTGCAATCCTTGCTCTCTGGCGACTCCTCTC  944

seq1  AGGCTTCGGAGAGAGCGTGTAAGCATCCAATATACGCTCACTGGTACTCA  988
      ||||||||||||||||| |||||||||| |||| |||||||||  |||| 
seq2  AGGCTTCGGAGAGAGCG-GTAAGCATCC-ATATTCGCTCACTGTGACTCT  992

seq1  CTAAGACGCCGGACGGCTGCCTTTATAGGGGATCATTGCACATGGATGAG  1038
      || ||||||| ||||||||||||||||||||| |  ||| | ||||||||
seq2  CT-AGACGCC-GACGGCTGCCTTTATAGGGGA-CTATGC-CCTGGATGAG  1038

seq1  GAGGACAGT-GGGCTTTCATGAGAA  1062
      |||| |||| |||||||||||||||
seq2  GAGG-CAGTGGGGCTTTCATGAGAA  1062