BAC Information

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BAC

Clone NameB6Ng01-036E21
Chromosome6 (Build37)
Map Location 4,525,036 - 4,651,354
singlet/doubletdoublet
Overlap geneCasd1, Sgce
Upstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2
Downstream genePeg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036E21.bB6Ng01-036E21.g
ACCDH864524DH864525
length985999
definitionDH864524|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E21, 5' end.DH864525|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,525,036 - 4,526,026)(4,650,333 - 4,651,354)
sequence
gaattccacggaataaattggtactactgatgacagtacaaaattttata
gtagctctttaatggtttgaacatactttgcccagagaatatactttggc
actttttggaggtgtggccttgttggagggagtgtgtcactgtgagggca
agcaatgagaccctcctcctgtttgccatgaagtcatacttctcctgttt
tccttcagaaacagatgtagaactctcagctcctccagcaccgtgcctgc
ctggacactggcgtgcttcctaccatgaaaatgggctgaacctcagaatc
agcaagccagccccagttaaatgctgtcctttgtaagagttgccgtggtc
atggtgtctcttcacagtactggaaaccctaagtcactattataactgct
cagtgacatgaggataaatacgtcagtaatcgagaaaatggtaagaagtc
taagtagagatgcagacattattaaagggaaaccaaaaattctaaagctt
ggaccgggaagatggctcagtgggtaaaggagttgagttctgatttccag
aacatgtgtaaaaacccaagtatgctggcatacaccaatgctgtgtgcag
gaggccgggggtctctggcatgcaccaatgctgtgtgcaggaggccgggg
gtctctgggctcttgggccagccagtgaggccaattggcatactctagat
ttaatgtgagatgctgtctgaaaatctagggtcaaagacatgtgactaat
tgctggtttcacctgcatatacacatgtgtgcatgtgcacactgcaaaca
cgaaatctcggaagctgaagaaaggcattggtgtcgtgatagcagaagtg
aacatgaaaatagtcagtgacttgatggtaaagaaagaacagtagctatt
gacagcagaaccaccatatgtcagacttgggagactgagcagagactagt
ttgagctagagtagcactatggcagacataataat
gaattcagtttttatattccaagtttcctatattgcttttataatttaag
agaaaaacacatttcaaagtaccaaaacttcttatgcttatttatattaa
ctttagctgaattaatctaaaaacttactaattataaatgcaaatcacta
tcatgtttgagcaaaagggctcttagcagtggtgaggaacacattcattc
gtctctgtttatgaaaatactttgcagctatcaagaaaaaaaatgtatgg
tgttgggcaggcagttaataaggagatggaaattggttttgtgaagctga
agtgacttttaaaaacagaatatatgtggaacacttgcctttcccagaga
tttcttacagctcctgtcctgaatcttttactttgatctttaatttactg
cattgctccctccttactttccctaaggtatagagttgttgctgtttaaa
ttgttccggacatgaaacttaagacctaatgtaataaacaaagttctgga
acagttgtcatctcaaatgtggccgggacatcatgcttacattgacagtt
ttgaatttttacattacatttttcatttatttcactttaaaatacagtag
cactgagtggtggctcacatctttgatcttggcacttgggtggttgagac
tagaggattgccatgagtttgagccacacagtgagtttatcaccaatcca
gactgtaagaatacgatcctgtctcaaaaaactaagcaaatagcatcttt
tattaaggtagaattcatataagactcatttcacccattcagaacagatg
atcattatactacaggtcaggccatcatctcaggtcaggccagtatttca
ggagcttctgcacccgcacccatacacatcagtagcactactacacgact
aacttctgcaactctagcttattagctgcttctcactatcttcttcagag
ttcacaaaaaaaaaaaaaagtattcactgcttttcatcttacataatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4525036_4526026
seq2: B6Ng01-036E21.b_44_1017

seq1  GAATTCCACGGAATAAATTGGTACTACTGATGACAGTACAAAATTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGAATAAATTGGTACTACTGATGACAGTACAAAATTTTATA  50

seq1  GTAGCTCTTTAATGGTTTGAACATACTTTGCCCAGAGAATATACTTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTTTAATGGTTTGAACATACTTTGCCCAGAGAATATACTTTGGC  100

seq1  ACTTTTTGGAGGTGTGGCCTTGTTGGAGGGAGTGTGTCACTGTGAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGGAGGTGTGGCCTTGTTGGAGGGAGTGTGTCACTGTGAGGGCA  150

seq1  AGCAATGAGACCCTCCTCCTGTTTGCCATGAAGTCATACTTCTCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAGACCCTCCTCCTGTTTGCCATGAAGTCATACTTCTCCTGTTT  200

seq1  TCCTTCAGAAACAGATGTAGAACTCTCAGCTCCTCCAGCACCGTGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGAAACAGATGTAGAACTCTCAGCTCCTCCAGCACCGTGCCTGC  250

seq1  CTGGACACTGGCGTGCTTCCTACCATGAAAATGGGCTGAACCTCAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTGGCGTGCTTCCTACCATGAAAATGGGCTGAACCTCAGAATC  300

seq1  AGCAAGCCAGCCCCAGTTAAATGCTGTCCTTTGTAAGAGTTGCCGTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGCCCCAGTTAAATGCTGTCCTTTGTAAGAGTTGCCGTGGTC  350

seq1  ATGGTGTCTCTTCACAGTACTGGAAACCCTAAGTCACTATTATAACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCTCTTCACAGTACTGGAAACCCTAAGTCACTATTATAACTGCT  400

seq1  CAGTGACATGAGGATAAATACGTCAGTAATCGAGAAAATGGTAAGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATGAGGATAAATACGTCAGTAATCGAGAAAATGGTAAGAAGTC  450

seq1  TAAGTAGAGATGCAGACATTATTAAAGGGAAACCAAAAATTCTAAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAGATGCAGACATTATTAAAGGGAAACCAAAAATTCTAAAGCTT  500

seq1  GGACCGGGAAGATGGCTCAGTGGGTAAAGGAGTTGAGTTCTGATTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGGGAAGATGGCTCAGTGGGTAAAGGAGTTGAGTTCTGATTTCCAG  550

seq1  AACATGTGTAAAAACCCAAGTATGCTGGCATACACCAATGCTGTGTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTAAAAACCCAAGTATGCTGGCATACACCAATGCTGTGTGCAG  600

seq1  GAGGCCGGGGGTCTCTGGCATGCACCAATGCTGTGTGCAGGAGGCCGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGGGGTCTCTGGCATGCACCAATGCTGTGTGCAGGAGGCCGGGG  650

seq1  GTCTCTGGGCTCTTGGGCCAGCCAGTGAGGCCAATTGGCATACTCTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGCTCTTGGGCCAGCCAGTGAGGCCAATTGGCATACTCTAGAT  700

seq1  TTAATGTGAGATGCTGTCTGAAAATCTAGGGTCAAAGACATGTGACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGAGATGCTGTCTGAAAATCTAGGGTCAAAGACATGTGACTAAT  750

seq1  TGCTGGTTTCACCTGCATATACACATGTGTGCATGTGCACACTGCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTTCACCTGCATATACACATGTGTGCATGTGCACACTGCAAACA  800

seq1  CGAAATCTCGGAAGCTGAAGAAAGGCATTGGTGTCGTGATAAGCAGAAGT  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGAAATCTCGGAAGCTGAAGAAAGGCATTGGTGTCGTGAT-AGCAGAAGT  849

seq1  GAACATGAAAATAGTCAGTGAACTTGATGGTAAAAGAAAAGAAACAGTAG  900
      |||||||||||||||||||| |||||||||| |||||||   ||||||| 
seq2  GAACATGAAAATAGTCAGTG-ACTTGATGGT-AAAGAAA--GAACAGTA-  894

seq1  GCTATTGACAGCAGAACCACCCATAATGTCAGAACTTGGGAGACTGAGGC  950
      ||||||||||||||||||| |||| ||||||| |||||||||||||    
seq2  GCTATTGACAGCAGAACCA-CCAT-ATGTCAG-ACTTGGGAGACTG----  937

seq1  AGGAGGGACATAGGTTTGAGGCTAGAGTAAGCACTATGGCA  991
      || || ||| || |||||| |||||||| ||||||||||||
seq2  AGCAGAGAC-TA-GTTTGA-GCTAGAGT-AGCACTATGGCA  974

seq1: chr6_4650333_4651354
seq2: B6Ng01-036E21.g_66_1064 (reverse)

seq1  CCATTATGTTAAATGATGAAAAAGCCAGTTGAAATAACTTTTTTTTTTTT  50
      |||||||||   | ||||||||   ||| ||||   ||||||||||||||
seq2  CCATTATGT---AAGATGAAAA--GCAG-TGAA--TACTTTTTTTTTTTT  42

seq1  TTGTGGAACTCCTGAAAGAAAGATTAAGGTGAGGAAGCAGCTAAATAAGC  100
      |||| ||||| |||||   |||||    |||| ||||||||| |||||||
seq2  TTGT-GAACT-CTGAA--GAAGAT---AGTGA-GAAGCAGCT-AATAAGC  83

seq1  TAGAGTTTGCCAAGAAGTTAGGTCGTTGGTAGTAAGTGGCTACTGATGTG  150
      ||||| ||||  |||||||| |||||  ||||| ||| ||||||||||||
seq2  TAGAG-TTGC--AGAAGTTA-GTCGT--GTAGT-AGT-GCTACTGATGTG  125

seq1  TATGGGGTGCGGGTGCAG-AGCT-CTGAAATACTGGCCTGACCTGAGATG  198
      ||| |||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TAT-GGGTGCGGGTGCAGAAGCTCCTGAAATACTGGCCTGACCTGAGATG  174

seq1  ATGGCCTGACCTGTAGTATAATGATCATCTGTTCTGAATGGGTGAAATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGGCCTGACCTGTAGTATAATGATCATCTGTTCTGAATGGGTGAAATGA  224

seq1  GTCTTATATGAATTCTACCTTAAT-AAAGATGCTATTTGCTTAGTTTTTT  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTTATATGAATTCTACCTTAATAAAAGATGCTATTTGCTTAGTTTTTT  274

seq1  GAGACAGGATCGTATTCTTACAGTCTGGATTGGTGATAAACTCACTGTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGATCGTATTCTTACAGTCTGGATTGGTGATAAACTCACTGTGT  324

seq1  GGCTCAAACTCATGGCAATCCTCTAGTCTCAACCACCCAAGTGCCAAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAACTCATGGCAATCCTCTAGTCTCAACCACCCAAGTGCCAAGAT  374

seq1  CAAAGATGTGAGCCACCACTCAGTGCTACTGTATTTTAAAGTGAAATAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTGAGCCACCACTCAGTGCTACTGTATTTTAAAGTGAAATAAA  424

seq1  TGAAAAATGTAATGTAAAAATTCAAAACTGTCAATGTAAGCATGATGTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGTAATGTAAAAATTCAAAACTGTCAATGTAAGCATGATGTCC  474

seq1  CGGCCACATTTGAGATGACAACTGTTCCAGAACTTTGTTTATTACATTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACATTTGAGATGACAACTGTTCCAGAACTTTGTTTATTACATTAG  524

seq1  GTCTTAAGTTTCATGTCCGGAACAATTTAAACAGCAACAACTCTATACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGTTTCATGTCCGGAACAATTTAAACAGCAACAACTCTATACCT  574

seq1  TAGGGAAAGTAAGGAGGGAGCAATGCAGTAAATTAAAGATCAAAGTAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGTAAGGAGGGAGCAATGCAGTAAATTAAAGATCAAAGTAAAA  624

seq1  GATTCAGGACAGGAGCTGTAAGAAATCTCTGGGAAAGGCAAGTGTTCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGACAGGAGCTGTAAGAAATCTCTGGGAAAGGCAAGTGTTCCAC  674

seq1  ATATATTCTGTTTTTAAAAGTCACTTCAGCTTCACAAAACCAATTTCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTGTTTTTAAAAGTCACTTCAGCTTCACAAAACCAATTTCCAT  724

seq1  CTCCTTATTAACTGCCTGCCCAACACCATACATTTTTTTTCTTGATAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTAACTGCCTGCCCAACACCATACATTTTTTTTCTTGATAGCT  774

seq1  GCAAAGTATTTTCATAAACAGAGACGAATGAATGTGTTCCTCACCACTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTATTTTCATAAACAGAGACGAATGAATGTGTTCCTCACCACTGC  824

seq1  TAAGAGCCCTTTTGCTCAAACATGATAGTGATTTGCATTTATAATTAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCCTTTTGCTCAAACATGATAGTGATTTGCATTTATAATTAGTA  874

seq1  AGTTTTTAGATTAATTCAGCTAAAGTTAATATAAATAAGCATAAGAAGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAGATTAATTCAGCTAAAGTTAATATAAATAAGCATAAGAAGTT  924

seq1  TTGGTACTTTGAAATGTGTTTTTCTCTTAAATTATAAAAGCAATATAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTTTGAAATGTGTTTTTCTCTTAAATTATAAAAGCAATATAGGA  974

seq1  AACTTGGAATATAAAAACTGAATTC  1022
      |||||||||||||||||||||||||
seq2  AACTTGGAATATAAAAACTGAATTC  999