BAC Information

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BAC

Clone NameB6Ng01-036J04
Chromosome6 (Build37)
Map Location 101,981,501 - 102,114,081
singlet/doubletdoublet
Overlap geneEG666084, Cntn3
Upstream geneEG545870, LOC100043321, Pdzrn3
Downstream geneEG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036J04.bB6Ng01-036J04.g
ACCDH864704DH864705
length1,007975
definitionDH864704|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J04, 5' end.DH864705|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,981,501 - 101,982,518)(102,113,112 - 102,114,081)
sequence
gaattctatcagacctttaatgaaaccctaataccaacactctttaaact
attccaccaaatataaatggaaggaacactacccaaatctctctatgaag
ccacaactatgcttatacataaaccacacaaagacccaacaaagaaagag
aacttcagaccaatttcccttatgaatatcgatacaaatactcaataaaa
ttcttgcaaactacatccaagaatacataaaaatgatcatccatcatcat
caagtaggctttatcccaggattgcaggggtggttcaatatatggaaatc
catcaatgtaattcactatataaacaaactgaaaagcaaaaaaccatatg
atcatctcatagatgctgagaaagtatttcacaaaattccacaccccttc
atgctgcatatctgtaattccagcattaaagatgtggaggtgcacattta
taagcccagcactggagatgcacatcagcttggatgtgtgtctgatttga
gattctaggttgattctcttgactggatatttatttttggtgtttcttag
gcctggttgattttatatcaagtatgaagagttggtaggtcagcctttta
tgtagataattagagttgattttggaatgaatgaattgaaaaatcatgta
gaagaaacgaaaggattgatatatgtgggccatgtgcaagctgtgctatg
cctgggtgtgtgaggatggtgtgaatgttccaagatcttgcgatttaatc
aacgtaagccactctacaggctattatgactgagctagggctgaggactt
gaggatggtgcaaaaaaaccaggtcttcagaaattcatcaggcttcctcc
gatggtgaacctgggttagggtgtgagtgcagatacaaaaggcaagctag
gatctgagggtctcgcagactgaatcagacataggatgagacttggctaa
acctggagtggtattgccctgcaggtaaggctgtgaactactagtaggaa
ggacttg
gaattccactctctatctcatcgagccaggcagccttttccattcccaag
taaaatttgtaaaagaacatggtgatgttgctggctttgatatggatgag
tcgagtctttcaatatgtgattttcaaaggactgtggaagacatggcttg
gcagtaacatgtagaaggtatatgaaaaatagcagattgagtgctagaat
tttttaccacttacctactattttcgcattttgctgggatttttttctta
ttaccaaaggtagcaaaattggaaatcgatggtatagctctcaagcaaca
ttaaaccttagccaaatgctgatacctttctagtgtcccacccttcttta
gagattccatttaagacaaggttgctatgtaaaaagaagaatggggtttt
tttttaagtttttctgtagggtctgtatatattgtacatatcaagaagaa
atccgaatgactagtggatttcctatgaccattgttatttccagtcaaaa
tgtggggtcacactttctccaacccctgtgctttatggtacacataacag
aactataccttttttattttctgatggctccaagaattttgttccctata
gtttttctttttacaagatggctattctcttgtttccctggttatttcta
tcagtatcatctccatgagatgtacacactgtttcatattgaaaagtcta
aattttactgtttaaattcctgtgtgtgtatcctatggttttctgtatgt
atgattttctattattccaataaaatttattaataatcaaattgtttaca
ttgtttattgtgttttggtggaaggatatattccacttggggagtggggc
atgccattgagagcgaccactgttcttaccatcctacacttttcagccta
cattttgactttgcatcttttagacgaatattttaatatttttgtttatg
ctctctaagtcagaaaaacctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101981501_101982518
seq2: B6Ng01-036J04.b_46_1052

seq1  GAATTCTATCAGACCTTTAATGAAACCCTAATACCAACACTCTTTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAGACCTTTAATGAAACCCTAATACCAACACTCTTTAAACT  50

seq1  ATTCCACCAAATATAAATGGAAGGAACACTACCCAAATCTCTCTATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCAAATATAAATGGAAGGAACACTACCCAAATCTCTCTATGAAG  100

seq1  CCACAACTATGCTTATACATAAACCACACAAAGACCCAACAAAGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTATGCTTATACATAAACCACACAAAGACCCAACAAAGAAAGAG  150

seq1  AACTTCAGACCAATTTCCCTTATGAATATCGATACAAATACTCAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGACCAATTTCCCTTATGAATATCGATACAAATACTCAATAAAA  200

seq1  TTCTTGCAAACTACATCCAAGAATACATAAAAATGATCATCCATCATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAAACTACATCCAAGAATACATAAAAATGATCATCCATCATCAT  250

seq1  CAAGTAGGCTTTATCCCAGGATTGCAGGGGTGGTTCAATATATGGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGCTTTATCCCAGGATTGCAGGGGTGGTTCAATATATGGAAATC  300

seq1  CATCAATGTAATTCACTATATAAACAAACTGAAAAGCAAAAAACCATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTAATTCACTATATAAACAAACTGAAAAGCAAAAAACCATATG  350

seq1  ATCATCTCATAGATGCTGAGAAAGTATTTCACAAAATTCCACACCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCATAGATGCTGAGAAAGTATTTCACAAAATTCCACACCCCTTC  400

seq1  ATGCTGCATATCTGTAATTCCAGCATTAAAGATGTGGAGGTGCACATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCATATCTGTAATTCCAGCATTAAAGATGTGGAGGTGCACATTTA  450

seq1  TAAGCCCAGCACTGGAGATGCACATCAGCTTGGATGTGTGTCTGATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCAGCACTGGAGATGCACATCAGCTTGGATGTGTGTCTGATTTGA  500

seq1  GATTCTAGGTTGATTCTCTTGACTGGATATTTATTTTTGGTGTTTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGGTTGATTCTCTTGACTGGATATTTATTTTTGGTGTTTCTTAG  550

seq1  GCCTGGTTGATTTTATATCAAGTATGAAGAGTTGGTAGGTCAGCCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTGATTTTATATCAAGTATGAAGAGTTGGTAGGTCAGCCTTTTA  600

seq1  TGTAGATAATTAGAGTTGATTTTGGAATGAATGAATTGAAAAATCATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATAATTAGAGTTGATTTTGGAATGAATGAATTGAAAAATCATGTA  650

seq1  GAAGAAACGAAAGGATTGATATATGTGGGCCATGTGCAAGCTGTGCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACGAAAGGATTGATATATGTGGGCCATGTGCAAGCTGTGCTATG  700

seq1  CCTGGGTGTGTGAGGATGGTGTGAATGTTCCAGGATCTTGCGATTTTATC  750
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CCTGGGTGTGTGAGGATGGTGTGAATGTTCCAAGATCTTGCGATTTAATC  750

seq1  AACGTAGGCCACTCTACAGGCTA-TATGACTGAGGCTAGGGCTGAGGAC-  798
      |||||| |||||||||||||||| ||||||||| ||||||||||||||| 
seq2  AACGTAAGCCACTCTACAGGCTATTATGACTGA-GCTAGGGCTGAGGACT  799

seq1  TGAGGATGGTGCAGAAGAGCAAGGTC-TCAGAGACTCATCAGGCTT-CTT  846
      ||||||||||||| || | | ||||| ||||| | ||||||||||| || 
seq2  TGAGGATGGTGCAAAAAAACCAGGTCTTCAGAAATTCATCAGGCTTCCTC  849

seq1  CGAT-GTGAACCT-GGTTA-GGTGTGAGTGTCAGATACAATATAGGCAAG  893
      |||| |||||||| ||||| |||||||||| ||||||||  | |||||||
seq2  CGATGGTGAACCTGGGTTAGGGTGTGAGTG-CAGATACA--AAAGGCAAG  896

seq1  CTAGGATCTGAGGGTCTCGCAAGACTGAATCAGAACATAGGATGTAGACC  943
      |||||||||||||||||||| |||||||||||| |||||||||| |||| 
seq2  CTAGGATCTGAGGGTCTCGC-AGACTGAATCAG-ACATAGGATG-AGAC-  942

seq1  TTGGGCTAAACCTGGAGGTGGGAATTGCCCAGGCAGGGTAAGGACTGTGG  993
       | ||||||||||||||   || |||||||  ||| ||||||| ||||| 
seq2  -TTGGCTAAACCTGGAG--TGGTATTGCCC-TGCA-GGTAAGG-CTGTGA  986

seq1  ACTTAACATAGTAGGCAAGGACTTG  1018
      |||  || ||||||| |||||||||
seq2  ACT--AC-TAGTAGG-AAGGACTTG  1007

seq1: chr6_102113112_102114081
seq2: B6Ng01-036J04.g_65_1039 (reverse)

seq1  TTACAGGTTTTACTGACTTAGAAGAGCATAAACAAAAATATTAAAATATT  50
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TTACAGGTTTTTCTGACTTAG-AGAGCATAAACAAAAATATTAAAATATT  49

seq1  CGTCTAAAAGATGCAAAGTC-AAATGTAGGCTGAAAAGTGTGAGGAATGG  99
      |||||||||||||||||||| |||||||||||||||||||| ||| ||||
seq2  CGTCTAAAAGATGCAAAGTCAAAATGTAGGCTGAAAAGTGT-AGG-ATGG  97

seq1  TAAGAACAGT-GTCGCTCT-AATGGCATGCCCCCACTCCCCAATGTGG-A  146
      |||||||||| |||||||| ||||||||| ||||||||||||| |||| |
seq2  TAAGAACAGTGGTCGCTCTCAATGGCATG-CCCCACTCCCCAA-GTGGAA  145

seq1  TATATCCCTCCACCAAACCACAATAAACAATGTAGAACAATTTGATTATT  196
      ||||||| ||||||||| |||||||||||||||| |||||||||||||||
seq2  TATATCCTTCCACCAAAACACAATAAACAATGTA-AACAATTTGATTATT  194

seq1  -ATAAATTTTATTAGAATAATAGAAAATCATACATACAGATAACCATAGG  245
       |||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AATAAATTTTATTGGAATAATAGAAAATCATACATACAGAAAACCATAGG  244

seq1  ATACACACACAGGAATTTAAACAGTAAAATTTAGACTTTTCAATATGAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACAGGAATTTAAACAGTAAAATTTAGACTTTTCAATATGAAA  294

seq1  CAGTGTGTACATCTCATGGAGATGATACTGATAGAAATAAC--AGGAAAC  343
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  CAGTGTGTACATCTCATGGAGATGATACTGATAGAAATAACCAGGGAAAC  344

seq1  AAGAGAATAGCCATCTTGTAAAA--GAAAACTATA-GGAAC-AAATTCTT  389
      |||||||||||||||||||||||   ||||||||| ||||| ||||||||
seq2  AAGAGAATAGCCATCTTGTAAAAAGAAAAACTATAGGGAACAAAATTCTT  394

seq1  GGAGTCATCAGAAAATAAAAAAGGTATAGTTCTGTTATGTGTACCATAAA  439
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATCAGAAAATAAAAAAGGTATAGTTCTGTTATGTGTACCATAAA  444

seq1  GCACAGGGGTTGGAGAAAGTGTGACCCCACATTTTGACTGGAAATAACAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGGTTGGAGAAAGTGTGACCCCACATTTTGACTGGAAATAACAA  494

seq1  TGGTCATAGGAAATCCACTAGTCATTCGGATTTCTTCTTGATATGTACAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATAGGAAATCCACTAGTCATTCGGATTTCTTCTTGATATGTACAA  544

seq1  TATATACAGACCCTACAGAAAAACTTAAAAAAAAACCCCATTCTTCTTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAGACCCTACAGAAAAACTTAAAAAAAAACCCCATTCTTCTTTT  594

seq1  TACATAGCAACCTTGTCTTAAATGGAATCTCTAAAGAAGGGTGGGACACT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCAACCTTGTCTTAAATGGAATCTCTAAAGAAGGGTGGGACACT  644

seq1  AGAAAGGTATCAGCATTTGGCTAAGGTTTAATGTTGCTTGAGAGCTATAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTATCAGCATTTGGCTAAGGTTTAATGTTGCTTGAGAGCTATAC  694

seq1  CATCGATTTCCAATTTTGCTACCTTTGGTAATAAGAAAAAAATCCCAGCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGATTTCCAATTTTGCTACCTTTGGTAATAAGAAAAAAATCCCAGCA  744

seq1  AAATGCGAAAATAGTAGGTAAGTGGTAAAAAATTCTAGCACTCAATCTGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCGAAAATAGTAGGTAAGTGGTAAAAAATTCTAGCACTCAATCTGC  794

seq1  TATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCATATACCTTCTACATGTTACTGCCAAGCCATGTCTTCCACAG  844

seq1  TCCTTTGAAAATCACATATTGAAAGACTCGACTCATCCATATCAAAGCCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAAAATCACATATTGAAAGACTCGACTCATCCATATCAAAGCCA  894

seq1  GCAACATCACCATGTTCTTTTACAAATTTTACTTGGGAATGGAAAAGGCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCACCATGTTCTTTTACAAATTTTACTTGGGAATGGAAAAGGCT  944

seq1  GCCTGGCTCGATGAGATAGAGAGTGGAATTC  970
      |||||||||||||||||||||||||||||||
seq2  GCCTGGCTCGATGAGATAGAGAGTGGAATTC  975