BAC Information

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BAC

Clone NameB6Ng01-037A08
Chromosome6 (Build37)5 (Build37)
Map Location 18,835,442 - 18,835,96885,904,096 - 85,905,222
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037A08.bB6Ng01-037A08.g
ACCDH865022DH865023
length9941,121
definitionDH865022|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A08, 5' end.DH865023|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(85,904,096 - 85,905,222)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccacattcttgagttctttatatatgttggatattagtctc
ctatcagatttacgataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattccc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagggccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcgtggtgattccaccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttatttctttcttcagagatttgaagtttttatcatac
agatcttcacttccttagttagagtcacgccaagatattttatattattt
gggactattgagaaggtgttgtttccctaatttcattctcagcc
gaattcctgaaaaaggtggggctgttccacagccctctgtgtactgatct
tgcaaggggaaagcttgcctccagtgactgctgacacaatcttacagact
cacaggaggagcaagctccagccagagacagcaagaacatctcacaccag
agattacctgatggaggtaaaggcaaacacaagaatcttaccaacagaaa
ccaagactacttggcatcatcagaaacccatactcctaccaaaacaagtc
ctgaataccccaacacagtggaaaatcaagattcggattcaaaagcaaac
acagttctaagcagagattttaagtgtcccaacatttgctatgttctgaa
tttttaaaaattcagcaaaatactctgatgagaaagacaatattcattta
aattgtattcattttattatattttctttatctatatgaggctgaaacaa
aaacaattttgtgtaaattatgcaaggacactaccaataaataattaaaa
attgttgttattcacagttttttactcccaaataatgttgatagtatggc
aagaaaatctgtagaataagcaaaatgcagttcattttgtgaagccttgc
ctgtggaccttaactgaggtgcaattagcagtacttataggtacgcagta
aaaggtgatgattaagtttatctagatacacactgagatttgcctgctta
gtgctgacctagttatttctgttttcagcactgaatcacttaaagacatg
agcgttttggtcagttacaacacacctgcttcttatttcgatacagaact
cacaatcaaccattacagtcagttaacatatctaaagcaaggcatttttc
atttttagatgtttttgagtaatttaatatgtgcaataaactgagatgtg
agttctcatatacttgtgtgaccactgcatattactgttatacttctaaa
gtaattgagaaagaagcacagaggtccacttgagcaaagtcatcttaaag
tcttgctccaaaaaattattcaacattactctataaatttgatagtgctt
tatttccgtcaaatcactggagctccatagattcatctaaagaattctac
actttatattaacctccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-037A08.b_51_578 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGGGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACTGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||| |||||| |||||| ||||||||||||||||||||
seq2  GGATCTTTACCTATCGTAAATCTGATAGGAGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAATGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr5_85904096_85905222
seq2: B6Ng01-037A08.g_69_1189

seq1  GAATTCCTGAAAAAGGTGGGGCTGTTCCACAGCCCTCTGTGTACTGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAAAAGGTGGGGCTGTTCCACAGCCCTCTGTGTACTGATCT  50

seq1  TGCAAGGGGAAAGCTTGCCTCCAGTGACTGCTGACACAATCTTACAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGGAAAGCTTGCCTCCAGTGACTGCTGACACAATCTTACAGACT  100

seq1  CACAGGAGGAGCAAGCTCCAGCCAGAGACAGCAAGAACATCTCACACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGGAGCAAGCTCCAGCCAGAGACAGCAAGAACATCTCACACCAG  150

seq1  AGATTACCTGATGGAGGTAAAGGCAAACACAAGAATCTTACCAACAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCTGATGGAGGTAAAGGCAAACACAAGAATCTTACCAACAGAAA  200

seq1  CCAAGACTACTTGGCATCATCAGAAACCCATACTCCTACCAAAACAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTACTTGGCATCATCAGAAACCCATACTCCTACCAAAACAAGTC  250

seq1  CTGAATACCCCAACACAGTGGAAAATCAAGATTCGGATTCAAAAGCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATACCCCAACACAGTGGAAAATCAAGATTCGGATTCAAAAGCAAAC  300

seq1  ACAGTTCTAAGCAGAGATTTTAAGTGTCCCAACATTTGCTATGTTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTAAGCAGAGATTTTAAGTGTCCCAACATTTGCTATGTTCTGAA  350

seq1  TTTTTAAAAATTCAGCAAAATACTCTGATGAGAAAGACAATATTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATTCAGCAAAATACTCTGATGAGAAAGACAATATTCATTTA  400

seq1  AATTGTATTCATTTTATTATATTTTCTTTATCTATATGAGGCTGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATTCATTTTATTATATTTTCTTTATCTATATGAGGCTGAAACAA  450

seq1  AAACAATTTTGTGTAAATTATGCAAGGACACTACCAATAAATAATTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTTGTGTAAATTATGCAAGGACACTACCAATAAATAATTAAAA  500

seq1  ATTGTTGTTATTCACAGTTTTTTACTCCCAAATAATGTTGATAGTATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTATTCACAGTTTTTTACTCCCAAATAATGTTGATAGTATGGC  550

seq1  AAGAAAATCTGTAGAATAAGCAAAATGCAGTTCATTTTGTGAAGCCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCTGTAGAATAAGCAAAATGCAGTTCATTTTGTGAAGCCTTGC  600

seq1  CTGTGGACCTTAACTGAGGTGCAATTAGCAGTACTTATAGGTACGCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACCTTAACTGAGGTGCAATTAGCAGTACTTATAGGTACGCAGTA  650

seq1  AAAGGTGATGATTAAGTTTATCTAGATACACACTGAGATTTGCCTGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATGATTAAGTTTATCTAGATACACACTGAGATTTGCCTGCTTA  700

seq1  GTGCTGACCTAGTTATTTCTGTTTTCAGCACTGAATCACTTAAAGACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACCTAGTTATTTCTGTTTTCAGCACTGAATCACTTAAAGACATG  750

seq1  AGCGTTTTGGTCAGTTACAACACACCTGCTTCTTATTTCGATACAGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTGGTCAGTTACAACACACCTGCTTCTTATTTCGATACAGAACT  800

seq1  CACAATCAACCATTACAGTCAGTTAACATATCTAAAGCAAGGCATTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCAACCATTACAGTCAGTTAACATATCTAAAGCAAGGCATTTTTC  850

seq1  ATTTTTAGATGTTTTTGAGTAATTAAATATGTGCAATAAACTGAGATGTG  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTTTTAGATGTTTTTGAGTAATTTAATATGTGCAATAAACTGAGATGTG  900

seq1  AGTTCTCATATACTTGTGTGACCACTGCATATTACTGTTATACTTCTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATATACTTGTGTGACCACTGCATATTACTGTTATACTTCTAAA  950

seq1  GTAATTGAGAAAGAAGCACAGAGGTCCACTTGAGCAAAGTCATCTTAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGAAAGAAGCACAGAGGTCCACTTGAGCAAAGTCATCTTAAAG  1000

seq1  TCTTGCTTCCAAAAAATATTCAACAATTACTCTATAAATTTGATAGTTGC  1050
      ||||||| | ||||| |||||||| ||||||||||||||||||||| |||
seq2  TCTTGCTCCAAAAAATTATTCAAC-ATTACTCTATAAATTTGATAG-TGC  1048

seq1  TTTATTTCTGTCAAATCACCTGAGCTCCATAGTATTCATCTAAAGATATC  1100
      |||||||| ||||||||||  ||||||||||| ||||||||||||| || 
seq2  TTTATTTCCGTCAAATCACTGGAGCTCCATAG-ATTCATCTAAAGA-ATT  1096

seq1  ATACACTTTATATGTAAAACTCCATTC  1127
       |||||||||||  | || ||||||||
seq2  CTACACTTTATA--TTAACCTCCATTC  1121