BAC Information

Click to search

BAC

Clone NameB6Ng01-037E07
Chromosome6 (Build37)
Map Location 8,718,209 - 8,828,468
singlet/doubletdoublet
Overlap geneIca1
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037E07.bB6Ng01-037E07.g
ACCDH865198DH865199
length1,1181,058
definitionDH865198|Mus musculus domesticus DNA, BAC clone: B6Ng01-037E07, 5' end.DH865199|Mus musculus domesticus DNA, BAC clone: B6Ng01-037E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,718,209 - 8,719,332)(8,827,411 - 8,828,468)
sequence
gaattctctattacagaaaacatcgcagctataccagggggctgacattt
gcagacaataaccgtgaaggctgtaagtgggaaccacgtaagatggcgta
tcagtcaactgtgacactagaaacagggaaagagcaaagaggtggccttt
gctgatgaaaaaagtaattgctgaagcaaagagggagaggatctgctgta
taagtcatatttgcctttgactttatcagtttatatgactttcaaatgct
aactcaaatgtggcagagagattttaatctatacttatggtgctgttttg
tccaaaacattaacctgtgaaggtgaagtgtcaaggtgacaaatgaagaa
cactagcaaaaaccacaagtgtagtatcaaatgtcggcacagggcatcac
gaaatgaccaagtcagatgctattcttcggttgcatttcaattcagactc
aaatataaaactgggaaggctcttccatatgttactttaaaatgtggaaa
ccaagtctacatttttaatgaaaaactagtctatgatacgctaactttat
catataagacatgtaagaccatccaatatagcagctagtggcaactaaac
actggaaatagagctacttagaactcagatgtgttgtctgtgtaaaactc
actagttgtttcaaagacttaacaaaacaaaaagaaccaaacacagcaaa
atatctcactaataaatctctatttgtatgtttatacaaatcatttgtag
ttgcatatttacacttacatatctatttaaattttataaagttgtatttt
tatattgtaatttatatttgtttaataaataaaacaaatattaaatgaaa
tataccatacatgttttaaatatataaataatttatatttagttgtattc
tatgtatgtgctatatatttacacttcatactgaattatttttatgtatt
gagtaatataaagttcatctgcttcttctagttttttaattagattactt
tacaacactagactgcttcaaatcctacctgttgtctacacaggattttt
ttggacagcctgggttaagctttaggcaatatagcaaagaagctaagcca
ccaatttccctggctaaa

gaattctcctggctatagaagccctttttatagataattgagcctgtgaa
tgaaaccaagacatttgaaggaaatacagctgattctttttccagcataa
tatagccctggcctccttcctagaaccagtaacatatgaggcaagtgaca
gcccttgatttctatcaaagacccaagactattccctgacagttgggggg
cagatctccaagctgcctcatctactctaccatctattcagggcaagcag
cccttggataataaatgatgagctgctgaagccactaacaaagaaagaat
ggattgataacttatcttttcttcaataaaatccaggagaaatattcatt
aagccctttgtgaacaaaagatacctagatcaaagaaagaaggaagggac
aggaaggggagaaaaagggaacaaagaaagagagtcatcagcaaaaaggg
ggatattttctactctcaagaagtaacacaagaagcacacaaactcctta
gctaaaatcacagaaagggtcgtgtgcagctttattacaggaaagcagag
ctgtgcattacagatcattacgatcagtgccgtgtgagggaagtaccgac
acacacaatcaaactggctactgaggcatgggaccacggtgcagcagcaa
tcaccatagaaagcagggcagtggcaataccattttaaatccgtctgata
gacaaactgtatcagttaaattttctcggggtgaatgagtttaaaatcgt
tatctacgcagcagcctgtcccaagatgccacttttatttatccagatgg
agattggagacgatgggtaaacattacagctccagcctcacatgctttgt
agataaaaagccaacacaatattttgctctctgtgcctctgcattatgtt
tttgcccagtgcagaagggaagggtgggatgtctggagaaagtggatact
ttaaatgacagggcacatggatctgtgaaatggcagaatgggttactaca
acagacccagggatgtaggagtcattttttcattattgtccctccctccg
ttttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8718209_8719332
seq2: B6Ng01-037E07.b_48_1165

seq1  GAATTCTCTATTACAGAAAACATCGCAGCTATACCAGGGGGCTGACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTACAGAAAACATCGCAGCTATACCAGGGGGCTGACATTT  50

seq1  GCAGACAATAACCGTGAAGGCTGTAAGTGGGAACCACGTAAGATGGCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAATAACCGTGAAGGCTGTAAGTGGGAACCACGTAAGATGGCGTA  100

seq1  TCAGTCAACTGTGACACTAGAAACAGGGAAAGAGCAAAGAGGTGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAACTGTGACACTAGAAACAGGGAAAGAGCAAAGAGGTGGCCTTT  150

seq1  GCTGATGAAAAAAGTAATTGCTGAAGCAAAGAGGGAGAGGATCTGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAAAAAAGTAATTGCTGAAGCAAAGAGGGAGAGGATCTGCTGTA  200

seq1  TAAGTCATATTTGCCTTTGACTTTATCAGTTTATATGACTTTCAAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATATTTGCCTTTGACTTTATCAGTTTATATGACTTTCAAATGCT  250

seq1  AACTCAAATGTGGCAGAGAGATTTTAATCTATACTTATGGTGCTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAATGTGGCAGAGAGATTTTAATCTATACTTATGGTGCTGTTTTG  300

seq1  TCCAAAACATTAACCTGTGAAGGTGAAGTGTCAAGGTGACAAATGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACATTAACCTGTGAAGGTGAAGTGTCAAGGTGACAAATGAAGAA  350

seq1  CACTAGCAAAAACCACAAGTGTAGTATCAAATGTCGGCACAGGGCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAAAACCACAAGTGTAGTATCAAATGTCGGCACAGGGCATCAC  400

seq1  GAAATGACCAAGTCAGATGCTATTCTTCGGTTGCATTTCAATTCAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCAAGTCAGATGCTATTCTTCGGTTGCATTTCAATTCAGACTC  450

seq1  AAATATAAAACTGGGAAGGCTCTTCCATATGTTACTTTAAAATGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAACTGGGAAGGCTCTTCCATATGTTACTTTAAAATGTGGAAA  500

seq1  CCAAGTCTACATTTTTAATGAAAAACTAGTCTATGATACGCTAACTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTACATTTTTAATGAAAAACTAGTCTATGATACGCTAACTTTAT  550

seq1  CATATAAGACATGTAAGACCATCCAATATAGCAGCTAGTGGCAACTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGACATGTAAGACCATCCAATATAGCAGCTAGTGGCAACTAAAC  600

seq1  ACTGGAAATAGAGCTACTTAGAACTCAGATGTGTTGTCTGTGTAAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATAGAGCTACTTAGAACTCAGATGTGTTGTCTGTGTAAAACTC  650

seq1  ACTAGTTGTTTCAAAGACTTAACAAAACAAAAAGAACCAAACACAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTGTTTCAAAGACTTAACAAAACAAAAAGAACCAAACACAGCAAA  700

seq1  ATATCTCACTAATAAATCTCTATTTGTATGTTTATACAAATCATTTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACTAATAAATCTCTATTTGTATGTTTATACAAATCATTTGTAG  750

seq1  TTGCATATTTACACTTACATATCTATTTAAATTTTATAAAGTTGTA-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGCATATTTACACTTACATATCTATTTAAATTTTATAAAGTTGTATTTT  800

seq1  TATATTGTAATTTATA-TTGTTTAATAAATAAAACAAATATTAAATGAAA  848
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATATTGTAATTTATATTTGTTTAATAAATAAAACAAATATTAAATGAAA  850

seq1  TATACCATACATG-TTTAAATATATAAATAATTTATATTTAGTTGTATTC  897
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATACCATACATGTTTTAAATATATAAATAATTTATATTTAGTTGTATTC  900

seq1  TATGTATGTGCTATATATTTACACTTCATACTGAATTATTTTTATGTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGCTATATATTTACACTTCATACTGAATTATTTTTATGTATT  950

seq1  GAGTAATATAAAAGTTCATCTGCTTCTTCTAGTTTTTTAAATTAAGAATA  997
      ||||||||| ||||||||||||||||||||||||||||||  | ||| ||
seq2  GAGTAATAT-AAAGTTCATCTGCTTCTTCTAGTTTTTTAA--TTAGATTA  997

seq1  CTTTACAACAACTAGACTGCTTCAAATCCTACCTGTATGTCTACCACAGG  1047
      ||||||||| |||||||||||||||||||||||||| |||||| ||||||
seq2  CTTTACAAC-ACTAGACTGCTTCAAATCCTACCTGT-TGTCTA-CACAGG  1044

seq1  ATTTTTTTTGGACAGCCTTGGTCTAAGGCATTAGGCAAATAAGCAAAGAG  1097
      | |||||||||||||||| ||| ||| || ||||||||   |||||||| 
seq2  A-TTTTTTTGGACAGCCTGGGT-TAA-GCTTTAGGCAATATAGCAAAGAA  1091

seq1  CTTAAGCCACCAATATTCCATGCTAAA  1124
        |||||||||||| | ||  ||||||
seq2  GCTAAGCCACCAATTTCCCTGGCTAAA  1118


seq1: chr6_8827411_8828468
seq2: B6Ng01-037E07.g_69_1126 (reverse)

seq1  TTAAAAAACGTAGAGAGGGACATTAAATGACAAAATGACTTCCTACATCC  50
      |||||||||| || |||||||| | ||||| |||||||| ||||||||||
seq2  TTAAAAAACGGAGGGAGGGACAAT-AATGAAAAAATGAC-TCCTACATCC  48

seq1  TGTGGTCTG-TGTAGTAAACCCATCTGCCATTTCACAGATCCATGTGCCC  99
         |||||| |||||||| ||  |||||||||||||||||||||||||||
seq2  CTGGGTCTGTTGTAGTAACCCATTCTGCCATTTCACAGATCCATGTGCCC  98

seq1  TGTCTTTTAAAGTATCCACTTTCTCC-GACTTCCCACCCTTCCCTTCTGC  148
      |||| ||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TGTCATTTAAAGTATCCACTTTCTCCAGACATCCCACCCTTCCCTTCTGC  148

seq1  ACTGGGCAAAAACCTTATGCAGAGGCACAGAGAGC-AAATATTGTGTTGG  197
      ||||||||||||| | ||||||||||||||||||| ||||||||||||||
seq2  ACTGGGCAAAAACATAATGCAGAGGCACAGAGAGCAAAATATTGTGTTGG  198

seq1  CTTTTTATCTACAAAGCATGTTGAGGCTGGAGCTGTAATGTTTACCCATC  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTTTATCTACAAAGCATG-TGAGGCTGGAGCTGTAATGTTTACCCATC  247

seq1  GTCTCCAATCTCCATCTGGATAAAT-AAAGTGGCATCTTGGGACAGGCTG  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCTCCAATCTCCATCTGGATAAATAAAAGTGGCATCTTGGGACAGGCTG  297

seq1  CTGCGTAGATAACGAGTTTTAAACTCATTCACCCCGAGAAAATTTAACTG  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCGTAGATAACGA-TTTTAAACTCATTCACCCCGAGAAAATTTAACTG  346

seq1  ATACAGTTTGTCTATCAGACGGATTTAAAATGGTATTGCCACTGCCCTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTTGTCTATCAGACGGATTTAAAATGGTATTGCCACTGCCCTGC  396

seq1  TTTCTATGGTGATTGCTGCTGCACCGTGGTCCCATGCCTCAGTAGCCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGGTGATTGCTGCTGCACCGTGGTCCCATGCCTCAGTAGCCAGT  446

seq1  TTGATTGTGTGTGTCGGTACTTCCCTCACACGGCACTGATCGTAATGATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTGTGTGTCGGTACTTCCCTCACACGGCACTGATCGTAATGATC  496

seq1  TGTAATGCACAGCTCTGCTTTCCTGTAATAAAGCTGCACACGACCCTTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCACAGCTCTGCTTTCCTGTAATAAAGCTGCACACGACCCTTTC  546

seq1  TGTGATTTTAGCTAAGGAGTTTGTGTGCTTCTTGTGTTACTTCTTGAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTAGCTAAGGAGTTTGTGTGCTTCTTGTGTTACTTCTTGAGAG  596

seq1  TAGAAAATATCCCCCTTTTTGCTGATGACTCTCTTTCTTTGTTCCCTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATATCCCCCTTTTTGCTGATGACTCTCTTTCTTTGTTCCCTTTT  646

seq1  TCTCCCCTTCCTGTCCCTTCCTTCTTTCTTTGATCTAGGTATCTTTTGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTTCCTGTCCCTTCCTTCTTTCTTTGATCTAGGTATCTTTTGTT  696

seq1  CACAAAGGGCTTAATGAATATTTCTCCTGGATTTTATTGAAGAAAAGATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGGCTTAATGAATATTTCTCCTGGATTTTATTGAAGAAAAGATA  746

seq1  AGTTATCAATCCATTCTTTCTTTGTTAGTGGCTTCAGCAGCTCATCATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCAATCCATTCTTTCTTTGTTAGTGGCTTCAGCAGCTCATCATTT  796

seq1  ATTATCCAAGGGCTGCTTGCCCTGAATAGATGGTAGAGTAGATGAGGCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCAAGGGCTGCTTGCCCTGAATAGATGGTAGAGTAGATGAGGCAG  846

seq1  CTTGGAGATCTGCCCCCCAACTGTCAGGGAATAGTCTTGGGTCTTTGATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATCTGCCCCCCAACTGTCAGGGAATAGTCTTGGGTCTTTGATA  896

seq1  GAAATCAAGGGCTGTCACTTGCCTCATATGTTACTGGTTCTAGGAAGGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAGGGCTGTCACTTGCCTCATATGTTACTGGTTCTAGGAAGGAG  946

seq1  GCCAGGGCTATATTATGCTGGAAAAAGAATCAGCTGTATTTCCTTCAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTATATTATGCTGGAAAAAGAATCAGCTGTATTTCCTTCAAAT  996

seq1  GTCTTGGTTTCATTCACAGGCTCAATTATCTATAAAAAGGGCTTCTATAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTTTCATTCACAGGCTCAATTATCTATAAAAAGGGCTTCTATAG  1046

seq1  CCAGGAGAATTC  1058
      ||||||||||||
seq2  CCAGGAGAATTC  1058


| Home | SequenceCutter | Blast | Download |