BAC Information

Click to search

BAC

Clone NameB6Ng01-037I17
Chromosome6 (Build37)
Map Location 57,882,771 - 57,883,462
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24
Downstream geneLOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037I17.bB6Ng01-037I17.g
ACCDH865377DH865378
length962693
definitionDH865377|Mus musculus domesticus DNA, BAC clone: B6Ng01-037I17, 5' end.DH865378|Mus musculus domesticus DNA, BAC clone: B6Ng01-037I17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgctctttccaagacttatcatgaatgggtgttggattttgtc
acatgctttctcagtatctaactaaatgatcatgcgttttttgtctttga
gtttgtttatatagtggattacattgatggatttctgtatattaaactat
ccctgcatccctggaatgaaacctacttgctcaggatgattgttctgatg
tgttcttggattcggttagtgaaaattttattgagtatttttgcatgaat
attcataatggaaatggtctgaagtactctatctttgttgggtctttctg
tggtttaggtatcagagtaattgtggcttcatagaatgagttgggtagag
tacattctgcttctattttgtggaatagtttgtgaagaactggaattaga
tcttcttagaaggtctgatagaactctgtactaaacccatctggtcctgg
gatttttttggttggaagattattaatgactgcttctatttctttaggga
atataggactgtttagatcattaacctgatcctgatttaactttggtacc
tggtatctgtctagaaacttttccatttaatccaggttctccagttttgt
tgagtatagccttttgtagaaggatctgatggtgtttttggattcccagg
atctattgttatgtctcccttttcatttctgattttgttaattaggattc
tttccttgtgccctgtagtaagtctggctaagggtttatctatcttgttg
attttctcaaagaaccagctcctcatttggttgattctttgaatagtctt
ttgtttccccttggttgatttcgcccctgagtttgattatttcctgctgt
ctactcctcttgggtgaatttgctaccttttgttctagagctttaggtat
gttgtcaagctgctagtgtgtgcctctcagttccttttttgagcaccaaa
gctatgattttc
gaattctctgcttagaattttaaatttgggctgctagtacaaaaagcatt
caacaggtgcttgtatacataaggtcaacagtgtaatgattaatagaata
acagtgtgatctctggttatatatggacactagcatggaactattcagaa
gaggaacagcacctaacagaaaatgggagagaaagaaaaggctagtagga
tgaaggtgatcaatgagtattatatattcagtaaatataatatagtccat
cactcattacaatgagtaaaattcatatgcatataaaatgttgctccagg
tgcaacatttagggagcacatctgacctaggattctcctgagtgtgtact
ctaataattctgacaaaaatgttccacataggaattgacaaatgagttag
ttctccaccgtgaaacaagacactgaaataccttagagggtgatagacaa
aaagcactcttattggtatgcaggattacatttacagtattaagttacct
tgaactctatttttatattttctcatttacctgtatgtgtttaatactat
aaaacttaagctatgaatatacaacaaatattgactaatttataaaatta
gaaaatttctgactaagaaaatttgtaatttcctttaggaattcttaata
aattttcaactcatggttgggatgcataaggcactgttaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57882771_57883462
seq2: B6Ng01-037I17.g_72_764 (reverse)

seq1  TTGTTAACAGTGCCTTATGCATCCCAAACCATGAGTTGAAAATTTATTAA  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGTTAACAGTGCCTTATGCATCCC-AACCATGAGTTGAAAATTTATTAA  49

seq1  GAATTCCTAAAGGAAATTACAAATTTTCTTAGTCAGAAATTTTCTAA-TT  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATTCCTAAAGGAAATTACAAATTTTCTTAGTCAGAAATTTTCTAATTT  99

seq1  TATAAATTAGTCAATATTTGTTGTATATTCATAGCTTAAGTTTTATAGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTAGTCAATATTTGTTGTATATTCATAGCTTAAGTTTTATAGTA  149

seq1  TTAAACACATACAGGTAAATGAGAAAATAT-AAAATAGAGTTCAAGGTAA  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTAAACACATACAGGTAAATGAGAAAATATAAAAATAGAGTTCAAGGTAA  199

seq1  CTTAATACTGTAAATGTAATCCTGCATACCAATAAGAGTGCTTTTTGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACTGTAAATGTAATCCTGCATACCAATAAGAGTGCTTTTTGTCT  249

seq1  ATCACCCTCTAAGGTATTTCAGTGTCTTGTTTCACGGTGGAGAACTAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTCTAAGGTATTTCAGTGTCTTGTTTCACGGTGGAGAACTAACT  299

seq1  CATTTGTCAATTCCTATGTGGAACATTTTTGTCAGAATTATTAGAGTACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAATTCCTATGTGGAACATTTTTGTCAGAATTATTAGAGTACA  349

seq1  CACTCAGGAGAATCCTAGGTCAGATGTGCTCCCTAAATGTTGCACCTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGAGAATCCTAGGTCAGATGTGCTCCCTAAATGTTGCACCTGGA  399

seq1  GCAACATTTTATATGCATATGAATTTTACTCATTGTAATGAGTGATGGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATTTTATATGCATATGAATTTTACTCATTGTAATGAGTGATGGAC  449

seq1  TATATTATATTTACTGAATATATAATACTCATTGATCACCTTCATCCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATATTTACTGAATATATAATACTCATTGATCACCTTCATCCTAC  499

seq1  TAGCCTTTTCTTTCTCTCCCATTTTCTGTTAGGTGCTGTTCCTCTTCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTTCTTTCTCTCCCATTTTCTGTTAGGTGCTGTTCCTCTTCTGA  549

seq1  ATAGTTCCATGCTAGTGTCCATATATAACCAGAGATCACACTGTTATTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCATGCTAGTGTCCATATATAACCAGAGATCACACTGTTATTCT  599

seq1  ATTAATCATTACACTGTTGACCTTATGTATACAAGCACCTGTTGAATGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCATTACACTGTTGACCTTATGTATACAAGCACCTGTTGAATGCT  649

seq1  TTTTGTACTAGCAGCCCAAATTTAAAATTCTAAGCAGAGAATTC  692
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACTAGCAGCCCAAATTTAAAATTCTAAGCAGAGAATTC  693