BAC Information

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BAC

Clone NameB6Ng01-037J19
Chromosome6 (Build37)
Map Location 17,616,162 - 17,722,898
singlet/doubletdoublet
Overlap geneCapza2, St7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J19.bB6Ng01-037J19.g
ACCDH865416DH865417
length1,0941,073
definitionDH865416|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J19, 5' end.DH865417|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,721,792 - 17,722,898)(17,616,162 - 17,617,236)
sequence
gaattcactatagcacacacatggagtgacaaatagtgcttgcaataaca
gaatccagctaccctcccaacagaagcattaaaagccttcaccagcttca
gtgcactgtgcactgggattcaaaggacaaacatagatccctcccctagg
cagacaggggagtcatgggcactttcgctgaggagactcacttggcaaac
acgtgagactgcaagcacatgggctgggcgaaatgaaacacacttttcaa
gagaaactgtagctggtggtgcccctgaggaaggagaagagagctaaggc
tcccaaagcagactcaatgcctagtgtgcaaggaacaagtgagaagccct
atccagtggagcaggctggcaagagggactttggtagatgttagcatggg
aaaggagatgtgatcaggtccttagggtgctttaactcataggggtctgt
ctggagctggaaaatcctgcatctggttaatgtgtgttctgtgggcagtc
aaggaagagtacagctacacaactcagaacacctccgcataactcaggaa
gatggctccttggactaaggcagcaattggctaacaacattcaacagcac
aggaaataccctaccttcctctgagaagtcttacagactctggaaaatga
ggtcattatcaaggagaaagtaatatttaatcaagaaaatttttgacctg
acaattaatttgtcttgaacatgacttcttcaaatagaacagaatttcac
tgggatacagtgggaaaataaaattgtcgcagatgtctcagcaatgcaca
ctaatgattgtctcactgttcatcgttttttatcaacaccagtttccaac
aacactaagaccacatagcataaatattgtgccattcttcttacactgga
atattagtttaaaagtgaaaacaagctgggtctgtgatgcacaccttaaa
tcccaacacttgggagcaactccctgagttcgagggcagcctggtctaca
gagtgagttccagacagcagggaacacagagaaccctgtcttaacaaacc
gagatgaaaaaggagttatcccataaacccatactgtaagaact
gaattccatatgttcctgagttatttttatcacaaagccacaagtgtatt
ataaggcagattgtaatatatatataatcctgaactcatgaacatgtctc
agttgattctccctccccttggattggaaactgaatatcagtgtgacatt
aaaatggcaacatttggtatttatttgagtaaaaaaaaaatcaccagtga
atcatacactattttaaaatactttctttgtatattgtcattcttaacaa
gttgtaaattagaaaatttgggagtccacatggtatgcaactgcatcttt
tgttctccattttcctatgcatcataagcatgtttgtaatactttaaaaa
tatatctactgccaccacaggaattcacgcctcggtgaatgttagcgttt
actgtaaggagttggtggatttgtggtttcattcagtagctctgctgctt
atactcgagtggaatccattcctcacgtactcctgcagacatctgggcct
ggaatttttttttttttaaacaccacttttactatgtataataaaatatt
tcattagcttgaattgtatagatttttaaaaattcaataagagcatgttg
tttaatttctttttaaaatcactgttgggctttgaaagcattgcaaatat
atgacattgtgacagttttggctaatttcctctttagcttttagtcttgg
catcaggatttttaggaaaatgaactgataacattaattctatgtctaga
tttttaaaacacgtacttaaattttgatgattctgaagtaaatactaaat
aagtaactaatttgggtaagttgtgtgaattggggctagctagcatgggt
ttatatcccatggcagccaattattttttactattttctagaataacttt
tgaaaattgtatgcaactttttaatttgcattgtgaaacatgaaattctt
ccaaaatttcaggcattgcaaaaacagtgatgtacattttaagagtctaa
tatttggtttaatgaaagaagaatggagcatgggaaccctaggctcaggt
gagttttagtggaacctgtagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17721792_17722898
seq2: B6Ng01-037J19.b_49_1141 (reverse)

seq1  GTTCTTTCAGTATGGTGTTTTTGGTTTTAACTCCTTTTTTTCTTCTCGGT  50
      |||||| |||||||| |||| |||   |||||||  |||||| |||||| 
seq2  GTTCTTACAGTATGG-GTTTATGG-GATAACTCC--TTTTTCATCTCGG-  45

seq1  TTTGTTAAGACAGGGTTTCTCTGTGTATCCCTGGCTGTTCTGGAACTCAC  100
      ||||||||||||||| |||||||||| ||||| |||| ||||||||||||
seq2  TTTGTTAAGACAGGG-TTCTCTGTGT-TCCCT-GCTG-TCTGGAACTCAC  91

seq1  TCTGTAGACCAGGCTGCCCTCGAACTCAGGGAGTTTGCTTCCCAAGTGTT  150
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  TCTGTAGACCAGGCTGCCCTCGAACTCAGGGAG-TTGC-TCCCAAGTGTT  139

seq1  GGGATTTAAGGTGTGCATCACCAGACCCAGCTTTGTTTTCACTTTTAAAC  200
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GGGATTTAAGGTGTGCATCA-CAGACCCAGC-TTGTTTTCACTTTTAAAC  187

seq1  TTAATATTCCAGTGTAAGAAGAATGGCACAATATTTATGCTATGTGGTCT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAATATTCCAGTGTAAGAAGAATGGCACAATATTTATGCTATGTGGTCT  236

seq1  TAGTGTTGTTGGAAACTGGTGTTGATAAAAAACGATGAACAGTGAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGTTGGAAACTGGTGTTGATAAAAAACGATGAACAGTGAGACAA  286

seq1  TCATTAGTGTGCATTGCTGAGACATCTGCGACAATTTTATTTTCCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTGTGCATTGCTGAGACATCTGCGACAATTTTATTTTCCCACTG  336

seq1  TATCCCAGTGAAATTCTGTTCTATTTGAAGAAGTCATGTTCAAGACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGTGAAATTCTGTTCTATTTGAAGAAGTCATGTTCAAGACAAAT  386

seq1  TAATTGTCAGGTCAAAAATTTTCTTGATTAAATATTACTTTCTCCTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCAGGTCAAAAATTTTCTTGATTAAATATTACTTTCTCCTTGAT  436

seq1  AATGACCTCATTTTCCAGAGTCTGTAAGACTTCTCAGAGGAAGGTAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTCATTTTCCAGAGTCTGTAAGACTTCTCAGAGGAAGGTAGGGT  486

seq1  ATTTCCTGTGCTGTTGAATGTTGTTAGCCAATTGCTGCCTTAGTCCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTGCTGTTGAATGTTGTTAGCCAATTGCTGCCTTAGTCCAAGG  536

seq1  AGCCATCTTCCTGAGTTATGCGGAGGTGTTCTGAGTTGTGTAGCTGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTCCTGAGTTATGCGGAGGTGTTCTGAGTTGTGTAGCTGTACT  586

seq1  CTTCCTTGACTGCCCACAGAACACACATTAACCAGATGCAGGATTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGACTGCCCACAGAACACACATTAACCAGATGCAGGATTTTCCA  636

seq1  GCTCCAGACAGACCCCTATGAGTTAAAGCACCCTAAGGACCTGATCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACAGACCCCTATGAGTTAAAGCACCCTAAGGACCTGATCACAT  686

seq1  CTCCTTTCCCATGCTAACATCTACCAAAGTCCCTCTTGCCAGCCTGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCATGCTAACATCTACCAAAGTCCCTCTTGCCAGCCTGCTCC  736

seq1  ACTGGATAGGGCTTCTCACTTGTTCCTTGCACACTAGGCATTGAGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAGGGCTTCTCACTTGTTCCTTGCACACTAGGCATTGAGTCTGC  786

seq1  TTTGGGAGCCTTAGCTCTCTTCTCCTTCCTCAGGGGCACCACCAGCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGCCTTAGCTCTCTTCTCCTTCCTCAGGGGCACCACCAGCTACA  836

seq1  GTTTCTCTTGAAAAGTGTGTTTCATTTCGCCCAGCCCATGTGCTTGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTGAAAAGTGTGTTTCATTTCGCCCAGCCCATGTGCTTGCAGT  886

seq1  CTCACGTGTTTGCCAAGTGAGTCTCCTCAGCGAAAGTGCCCATGACTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTGTTTGCCAAGTGAGTCTCCTCAGCGAAAGTGCCCATGACTCCC  936

seq1  CTGTCTGCCTAGGGGAGGGATCTATGTTTGTCCTTTGAATCCCAGTGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCTAGGGGAGGGATCTATGTTTGTCCTTTGAATCCCAGTGCAC  986

seq1  AGTGCACTGAAGCTGGTGAAGGCTTTTAATGCTTCTGTTGGGAGGGTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACTGAAGCTGGTGAAGGCTTTTAATGCTTCTGTTGGGAGGGTAGC  1036

seq1  TGGATTCTGTTATTGCAAGCACTATTTGTCACTCCATGTGTGTGCTATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGTTATTGCAAGCACTATTTGTCACTCCATGTGTGTGCTATAG  1086

seq1  TGAATTC  1107
      |||||||
seq2  TGAATTC  1093

seq1: chr6_17616162_17617236
seq2: B6Ng01-037J19.g_68_1140

seq1  GAATTCCATATGTTCCTGAGTTATTTTTATCACAAAGCCACAAGTGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTTCCTGAGTTATTTTTATCACAAAGCCACAAGTGTATT  50

seq1  ATAAGGCAGATTGTAATATATATATAATCCTGAACTCATGAACATGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAGATTGTAATATATATATAATCCTGAACTCATGAACATGTCTC  100

seq1  AGTTGATTCTCCCTCCCCTTGGATTGGAAACTGAATATCAGTGTGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCTCCCTCCCCTTGGATTGGAAACTGAATATCAGTGTGACATT  150

seq1  AAAATGGCAACATTTGGTATTTATTTGAGTAAAAAAAAAATCACCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAACATTTGGTATTTATTTGAGTAAAAAAAAAATCACCAGTGA  200

seq1  ATCATACACTATTTTAAAATACTTTCTTTGTATATTGTCATTCTTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACACTATTTTAAAATACTTTCTTTGTATATTGTCATTCTTAACAA  250

seq1  GTTGTAAATTAGAAAATTTGGGAGTCCACATGGTATGCAACTGCATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAATTAGAAAATTTGGGAGTCCACATGGTATGCAACTGCATCTTT  300

seq1  TGTTCTCCATTTTCCTATGCATCATAAGCATGTTTGTAATACTTTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCATTTTCCTATGCATCATAAGCATGTTTGTAATACTTTAAAAA  350

seq1  TATATCTACTGCCACCACAGGAATTCACGCCTCGGTGAATGTTAGCGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTACTGCCACCACAGGAATTCACGCCTCGGTGAATGTTAGCGTTT  400

seq1  ACTGTAAGGAGTTGGTGGATTTGTGGTTTCATTCAGTAGCTCTGCTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGGAGTTGGTGGATTTGTGGTTTCATTCAGTAGCTCTGCTGCTT  450

seq1  ATACTCGAGTGGAATCCATTCCTCACGTACTCCTGCAGACATCTGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCGAGTGGAATCCATTCCTCACGTACTCCTGCAGACATCTGGGCCT  500

seq1  GGAATTTTTTTTTTTTTAAACACCACTTTTACTATGTATAATAAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTTTTTTTTTTAAACACCACTTTTACTATGTATAATAAAATATT  550

seq1  TCATTAGCTTGAATTGTATAGATTTTTAAAAATTCAATAAGAGCATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCTTGAATTGTATAGATTTTTAAAAATTCAATAAGAGCATGTTG  600

seq1  TTTAATTTCTTTTTAAAATCACTGTTGGGCTTTGAAAGCATTGCAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCTTTTTAAAATCACTGTTGGGCTTTGAAAGCATTGCAAATAT  650

seq1  ATGACATTGTGACAGTTTTGGCTAATTTCCTCTTTAGCTTTTAGTCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTGTGACAGTTTTGGCTAATTTCCTCTTTAGCTTTTAGTCTTGG  700

seq1  CATCAGGATTTTTAAGGAAAATGAACTGATAACATTAATTCTATGTCTAG  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATTTTT-AGGAAAATGAACTGATAACATTAATTCTATGTCTAG  749

seq1  ATTTTTAAAACACGTACTTAAATTTTGATGATTCTGAAGTAAATACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAACACGTACTTAAATTTTGATGATTCTGAAGTAAATACTAAA  799

seq1  TAAGTAACTAATTT-GGTAAGTTGTGTGAATT-GGGCTAGCTAGCATGGG  848
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TAAGTAACTAATTTGGGTAAGTTGTGTGAATTGGGGCTAGCTAGCATGGG  849

seq1  TTTATAT-CCATGGCAGCCAATTA-TTTTTACTATTTTCTAGAATATACT  896
      ||||||| |||||||||||||||| ||||||||||||||||||||| |||
seq2  TTTATATCCCATGGCAGCCAATTATTTTTTACTATTTTCTAGAATA-ACT  898

seq1  TTTGAAAA-TGTATGCAACTTTTTAAATTGGCATGTGAAACATGAAATTC  945
      |||||||| ||||||||||||||||| |||   |||||||||||||||||
seq2  TTTGAAAATTGTATGCAACTTTTTAATTTGCATTGTGAAACATGAAATTC  948

seq1  TTCCAAAATTTCAGGCA-TGCCAAAACAGTGATTGTACAATTTTAGAGTC  994
      ||||||||||||||||| ||| |||||||||| |||||| ||| ||||||
seq2  TTCCAAAATTTCAGGCATTGCAAAAACAGTGA-TGTACATTTTAAGAGTC  997

seq1  TTAATATTTTGTTTATATGAAAGAAGAATGGAGCCATGGGATACCTAAAG  1044
       |||||||| ||||| ||||||||||||||||| ||||||| |||  | |
seq2  -TAATATTTGGTTTA-ATGAAAGAAGAATGGAG-CATGGGA-ACCCTAGG  1043

seq1  CTCAGGTGTAGTTTTAGTGGGAACTGTAGTG  1075
      |||||||| ||||||||||| | ||||||||
seq2  CTCAGGTG-AGTTTTAGTGGAACCTGTAGTG  1073