BAC Information

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BAC

Clone NameB6Ng01-037O03
Chromosome6 (Build37)
Map Location 115,124,735 - 115,306,691
singlet/doubletdoublet
Overlap geneSyn2, Timp4
Upstream geneSlc6a11, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420
Downstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037O03.bB6Ng01-037O03.g
ACCDH865615DH865616
length991489
definitionDH865615|Mus musculus domesticus DNA, BAC clone: B6Ng01-037O03, 5' end.DH865616|Mus musculus domesticus DNA, BAC clone: B6Ng01-037O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,124,735 - 115,125,735)(115,306,197 - 115,306,691)
sequence
gaattcctaaaaagttatttatcccaaacctatacttttaaaatatgtgt
attaatgaatttttcattctttgtttatactggcatgtataataagcttt
agtgagtttctacttccttgtctttaaaataagtacactaggttcaaaag
cagtagatttacctttttgttaatatatgtttaaaacaatgagttggttt
ttgtttgttggttttttgtagtctaagtgttcttggtctcattgtcctta
taggttacaggggtcagagttcaggacctctcctggcattcattccagga
atctgaaacctgaacttgcagcccatgatcattcctctgtcttaccgcca
gggggctgtgcaagagctgcatcatgaaaatgatgttcgttgcattgcat
ttaatttagtgtttttatttttaagtgtcagcagctgtttaatgcctgag
atgtaattataatttataataaacgataagtttagagagttttctgatgc
aataaaaaggagtggctaaagtaagacatttgaattcattgatctttgct
gcaagtagaagtttggtttctaaaacaaaacaaaaaaaatcaggttttta
tgcataaaataaacgactcgattgcttcaatattaataattatttccttc
cttgggggggattctgttgtttagggagaccaccactgggataaccatca
ctgataagaaactttcacatagtgttttacatttcccacaatcctaggac
tgtgtcagacctcgggcacagttattcactttgtctcgggcttgcattgt
cctctgcgtgtttgcttgttctctgcccatccctaccacactgtggtctc
ctaggacagcagtgataaggacctggtttgtgggcccatggagctggatt
ttgccgtacaaacaggtatcaagctcatgctgaagacaggggtgactgtg
agaattgaagggggaaagagcaaattcgttatttttaggga
cttccaaatactggtgctgactccccagagcattaaaaagaatgctcttg
ttttttattgtttgttttgatttttttccccattgaagttcataacatat
taacttttgtctaaagagtggcactttgtccgcaggcccacacttgcaca
ctgtgtttactatattgggaagggtccaggttgagtagtggtagttgatc
tccatttactttgactatatttaaatgggacagtccctaagaatttaaaa
ataatgttacattactttttactgggggggggtagtggttaaaaataaca
aattacttttctctcttttccaggggtcctgtaaaatggctctggcatta
tagagaatattccacaatgtggaaggtgagtacaggcatccttccagaga
ggactgctctgctctttagagctgctggccacaacattgccttttatctc
tatctcagacatccctgaccaatttccagccagtatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115124735_115125735
seq2: B6Ng01-037O03.b_46_1035

seq1  GAATTCCTAAAAAGTTATTTATCCCAAACCTATACTTTTAAAATATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAAAGTTATTTATCCCAAACCTATACTTTTAAAATATGTGT  50

seq1  ATTAATGAATTTTTCATTCTTTGTTTATACTGGCATGTATAATAAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAATTTTTCATTCTTTGTTTATACTGGCATGTATAATAAGCTTT  100

seq1  AGTGAGTTTCTACTTCCTTGTCTTTAAAATAAGTACACTAGGTTCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTCTACTTCCTTGTCTTTAAAATAAGTACACTAGGTTCAAAAG  150

seq1  CAGTAGATTTACCTTTTTGTTAATATATGTTTAAAACAATGAGTTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATTTACCTTTTTGTTAATATATGTTTAAAACAATGAGTTGGTTT  200

seq1  TTGTTTGTTGGTTTTTTGTAGTCTAAGTGTTCTTGGTCTCATTGTCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTGGTTTTTTGTAGTCTAAGTGTTCTTGGTCTCATTGTCCTTA  250

seq1  TAGGTTACAGGGGTCAGAGTTCAGGACCTCTCCTGGCATTCATTCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTACAGGGGTCAGAGTTCAGGACCTCTCCTGGCATTCATTCCAGGA  300

seq1  ATCTGAAACCTGAACTTGCAGCCCATGATCATTCCTCTGTCTTACCGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAACCTGAACTTGCAGCCCATGATCATTCCTCTGTCTTACCGCCA  350

seq1  GGGGGCTGTGCAAGAGCTGCATCATGAAAATGATGTTCGTTGCATTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGTGCAAGAGCTGCATCATGAAAATGATGTTCGTTGCATTGCAT  400

seq1  TTAATTTAGTGTTTTTATTTTTAAGTGTCAGCAGCTGTTTAATGCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAGTGTTTTTATTTTTAAGTGTCAGCAGCTGTTTAATGCCTGAG  450

seq1  ATGTAATTATAATTTATAATAAACGATAAGTTTAGAGAGTTTTCTGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTATAATTTATAATAAACGATAAGTTTAGAGAGTTTTCTGATGC  500

seq1  AATAAAAAGGAGTGGCTAAAGTAAGACATTTGAATTCATTGATCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGGAGTGGCTAAAGTAAGACATTTGAATTCATTGATCTTTGCT  550

seq1  GCAAGTAGAAGTTTGGTTTCTAAAACAAAACAAAAAAAATCAGGTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGAAGTTTGGTTTCTAAAACAAAACAAAAAAAATCAGGTTTTTA  600

seq1  TGCATAAAATAAACGACTCGATTGCTTCAATATTAATAATTATTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAATAAACGACTCGATTGCTTCAATATTAATAATTATTTCCTTC  650

seq1  CTTGGGGGGGATTCTGTTGTTTAGGGAGACCACCACTGGGATAACCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGGGGATTCTGTTGTTTAGGGAGACCACCACTGGGATAACCATCA  700

seq1  CTGATAAGAAACTTTCACATAGTGTTTTACATTTCCCACAATCCTAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGAAACTTTCACATAGTGTTTTACATTTCCCACAATCCTAGGAC  750

seq1  TGTGTCAGACCTCGGGCACAGTTATTCAC-TTGTCTCGGGCTTGCATTGT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGTCAGACCTCGGGCACAGTTATTCACTTTGTCTCGGGCTTGCATTGT  800

seq1  CCTCTGCGTGTTTGCTTGTCCTCTGCCCCATCCCTACCACACTGTGGTCT  849
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CCTCTGCGTGTTTGCTTGTTCTCTG-CCCATCCCTACCACACTGTGGTCT  849

seq1  CCTAGGACAGCAGTGATAAGGACCTGGTTTGTGGGCCCCATGGAGCTGGA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTAGGACAGCAGTGATAAGGACCTGGTTTGTGGG-CCCATGGAGCTGGA  898

seq1  TTTTGCCGTACGAACAGGTATCAAGCTCCATGCCTGGAAGCACAGGGGTG  949
      ||||||||||| ||||||||||||||| |||||   |||| |||||||| 
seq2  TTTTGCCGTACAAACAGGTATCAAGCT-CATGC--TGAAG-ACAGGGGT-  943

seq1  GACTGTGGAGAAGTGAAGGGGGGAAAGAAGCCAAAATCAGTTATTTTTAG  999
      |||||| ||||| |||| ||||||||| |||  ||||  |||||||||||
seq2  GACTGT-GAGAATTGAA-GGGGGAAAG-AGC--AAATTCGTTATTTTTAG  988

seq1  GG  1001
      ||
seq2  GG  990

seq1: chr6_115306197_115306691
seq2: B6Ng01-037O03.g_70_564 (reverse)

seq1  CTGATACTGGCTGGAGATTGGTCAGGGTTGTCTGAGATAGAGATAAAAGG  50
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CTGATACTGGCTGGAAATTGGTCAGGGATGTCTGAGATAGAGATAAAAGG  50

seq1  CAATGTTGTGGCCAGCAGCTCTAAAGAGCAGAGCAGTCCTCTCTGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGTGGCCAGCAGCTCTAAAGAGCAGAGCAGTCCTCTCTGGAAGG  100

seq1  ATGCCTGTGCTCACCTTCCACATTGTGGAATATTCTCTCTAATGCCAGAG  150
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  ATGCCTGTACTCACCTTCCACATTGTGGAATATTCTCTATAATGCCAGAG  150

seq1  CCATTTTACAGGACCCCTGGAAAAGAGAGAAAAGTAATTTGTTATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTACAGGACCCCTGGAAAAGAGAGAAAAGTAATTTGTTATTTTTA  200

seq1  ACCACTACCCCCCCCCAGTAAAAAGTAATGTAACATTATTTTTAAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTACCCCCCCCCAGTAAAAAGTAATGTAACATTATTTTTAAATTCT  250

seq1  TAGGGACTGTCCCATTTAAATATAGTCAAAGTAAATGGAGATCAACTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACTGTCCCATTTAAATATAGTCAAAGTAAATGGAGATCAACTACC  300

seq1  ACTACTCAACCTGGACCCTTCCCAATATAGTAAACACAGTGTGCAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCAACCTGGACCCTTCCCAATATAGTAAACACAGTGTGCAAGTGT  350

seq1  GGGCCTGCGGACAAAGTGCCACTCTTTAGACAAAAGTTAATATGTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCGGACAAAGTGCCACTCTTTAGACAAAAGTTAATATGTTATGA  400

seq1  ACTTCAATGGGGAAAAAAATCAAAACAAACAATAAAAAACATGAGCATTC  450
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTTCAATGGGGAAAAAAATCAAAACAAACAATAAAAAACAAGAGCATTC  450

seq1  TTTTTAATGCTCTGGGGAGTCAGCACCAGTATTTGGAAGGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGCTCTGGGGAGTCAGCACCAGTATTTGGAAGGAATTC  495