BAC Information

Click to search

BAC

Clone NameB6Ng01-038A05
Chromosome6 (Build37)
Map Location 107,662,207 - 107,788,026
singlet/doubletdoublet
Overlap genenone
Upstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A05.bB6Ng01-038A05.g
ACCDH865709DH865710
length1,0001,042
definitionDH865709|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A05, 5' end.DH865710|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,662,207 - 107,663,209)(107,786,976 - 107,788,026)
sequence
gaattctgacctaattataggtagtggggaggcaaaatatacctgaaatt
tcttgctgttaaaataaataagagctgctactgaaaaccccggaagagaa
ttttccttagaagcttgacctgtccagacatgagatcatgattcacctaa
atgttctcccggaacttcttgcgtggtctttcagaatctacaacaccatc
tggccctaatggtcgaaagcaaacagctatgtttgaacctttcgttttaa
acagtctaagcagcacctcagcgtactgaactgattatagtctcgaaaat
aagacacctagggtaccattgtctccgctgatggaaaaccatacacaccg
ttcaatgaatcaatttaacatgctcaagaacccaagacaaacatcaacag
aatgacatttctttaacctgaaggcagaaaatagcaatacctttcatcag
aggtgtggctcggctcagcacaagaggctcaggtctctgcctaccgaaca
tttcatttacctctaacctggggattttggacataaacttcgaccaacta
aataattctacagacttccccgaataagattgtcctagagtgggaactga
ggagtgtgttttgaatatttagaggagctctgaagaaacagtaaggtttg
aacaggtaaaaaggggaaggctgtcatagttagtggagcatcgctccatt
aaccccctccccaaccctttatttccattagcttattttatgtttgcagc
tctccagtgggacgggcgccctattagctgctcttttatacaggtgatca
agttgtggttaaacagtgagcatcagagaaccagtagctaggttttcggt
gcacactctctcctgaattcacctctgaattctacccctccaggcacagt
gaaagtgctgtccaaggaagtgatcgagctacacagccagaggccagcag
agggcaatcacctaatccagggatgagtaaatagcagggggggggggggg

gaattcttttctaattttttccactagtgttctgcttaagttcgggctca
caaatcttctcaaaatgtaacaatcagcatttgggagcaagtacgtacaa
ggcctagcacatcactgtgcaagtaactttttgttgtagcatgatgtctt
attcagggtttctatttctgcacaaacatcatgaccaagaagcaagttgg
ggaggaaagggtttattcagcttacacttccatgttgaggttcattacca
aaggaagttaggactggaactcaagaagattaggaaacaggagctgatgc
agaagccatggagggatgttacttactggcttgcttccccagggttgctc
atcttgctttcttatagaacccaagaccaccagcccaaggatggtaccac
ccataaggggccctcccctcttgatcactcattgagaaaatgccttatat
ttggatctcgtggagggattttctcagctgaagctcctttctttgtgata
actccatctgatgtcaagttgacacaaaaccagccagtacacgtgccttc
tccaagtagggcaaaaccccacaggtttctgtgatgccaatcaattgaga
ggtaaagggtcttataatgaactaactgaaaaaaatctttataatagaaa
taaattacatacatttttggaaatacaaaatgtgtattatattaaactgc
tctaaagagtgaagtttctcaaatgtctattttaccaattatgtaattta
gtacggtgattattgtgtaaaataatctattatctggaagcctgcttgtt
taacttgtgttagatattttcacagacatcatgtttgcttgatcaaggaa
gtttttctgtttatagaaaaaccttaagcatgaactaatgctaaatgtgt
ggagaaagctttgctgtaaaacacattttaagctttctgctgtggtaggc
tatgtcacgtgtcataaagaaagacttagaagaaagttttccttcagtac
tttaaaggtccattcagttgagacattacatgaaacactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107662207_107663209
seq2: B6Ng01-038A05.b_47_1045

seq1  GAATTCTGACCTAATTATAGGTAGTGGGGAGGCAAAATATACCTGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCTAATTATAGGTAGTGGGGAGGCAAAATATACCTGAAATT  50

seq1  TCTTGCTGTTAAAATAAATAAGAGCTGCTACTGAAAACCCCGGAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGTTAAAATAAATAAGAGCTGCTACTGAAAACCCCGGAAGAGAA  100

seq1  TTTTCCTTAGAAGCTTGACCTGTCCAGACATGAGATCATGATTCACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTAGAAGCTTGACCTGTCCAGACATGAGATCATGATTCACCTAA  150

seq1  ATGTTCTCCCGGAACTTCTTGCGTGGTCTTTCAGAATCTACAACACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCCCGGAACTTCTTGCGTGGTCTTTCAGAATCTACAACACCATC  200

seq1  TGGCCCTAATGGTCGAAAGCAAACAGCTATGTTTGAACCTTTCGTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTAATGGTCGAAAGCAAACAGCTATGTTTGAACCTTTCGTTTTAA  250

seq1  ACAGTCTAAGCAGCACCTCAGCGTACTGAACTGATTATAGTCTCGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTAAGCAGCACCTCAGCGTACTGAACTGATTATAGTCTCGAAAAT  300

seq1  AAGACACCTAGGGTACCATTGTCTCCGCTGATGGAAAACCATACACACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCTAGGGTACCATTGTCTCCGCTGATGGAAAACCATACACACCG  350

seq1  TTCAATGAATCAATTTAACATGCTCAAGAACCCAAGACAAACATCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAATCAATTTAACATGCTCAAGAACCCAAGACAAACATCAACAG  400

seq1  AATGACATTTCTTTAACCTGAAGGCAGAAAATAGCAATACCTTTCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTTCTTTAACCTGAAGGCAGAAAATAGCAATACCTTTCATCAG  450

seq1  AGGTGTGGCTCGGCTCAGCACAAGAGGCTCAGGTCTCTGCCTACCGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGCTCGGCTCAGCACAAGAGGCTCAGGTCTCTGCCTACCGAACA  500

seq1  TTTCATTTACCTCTAACCTGGGGATTTTGGACATAAACTTCGACCAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTACCTCTAACCTGGGGATTTTGGACATAAACTTCGACCAACTA  550

seq1  AATAATTCTACAGACTTCCCCGAATAAGATTGTCCTAGAGTGGGAACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTACAGACTTCCCCGAATAAGATTGTCCTAGAGTGGGAACTGA  600

seq1  GGAGTGTGTTTTGAATATTTAGAGGAGCTCTGAAGAAACAGTAAGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTTTTGAATATTTAGAGGAGCTCTGAAGAAACAGTAAGGTTTG  650

seq1  AACAGGTAAAAAGGGGAAGGCTGTCATAGTTAGTGGAGCATCGCTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTAAAAAGGGGAAGGCTGTCATAGTTAGTGGAGCATCGCTCCATT  700

seq1  AACCCCCTCCCCAACCCTTTATTTCCATTAGCTTATTTTATGTTTGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTCCCCAACCCTTTATTTCCATTAGCTTATTTTATGTTTGCAGC  750

seq1  TCTCCAGTGGGACGGGCGCCCTATTAGCTGCTCTTTTATACAGGTGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTGGGACGGGCGCCCTATTAGCTGCTCTTTTATACAGGTGATCA  800

seq1  AGTTGTGGTTAAACAGTGAGCATCAGAGAACCAGTAGCTAGGTTTTCGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGTTAAACAGTGAGCATCAGAGAACCAGTAGCTAGGTTTTCGGT  850

seq1  GCACACTCTCTCCTGAATTCACCTCTGAATTCTACCCCTCCAGGCACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCTCTCCTGAATTCACCTCTGAATTCTACCCCTCCAGGCACAGT  900

seq1  GAAAGTGCTGTCCAAGGCAGGTGATCGAGCTACACAGCCAGAGGCCAGCA  950
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  GAAAGTGCTGTCCAAGG-AAGTGATCGAGCTACACAGCCAGAGGCCAGCA  949

seq1  GAGGGCAAATCACCTAATCCAGGGATGAGTAAATTAGGCAGGGGGGGGGG  1000
      |||||| |||||||||||||||||||||||||||   |||||||||||||
seq2  GAGGGC-AATCACCTAATCCAGGGATGAGTAAAT--AGCAGGGGGGGGGG  996

seq1  GGG  1003
      |||
seq2  GGG  999

seq1: chr6_107786976_107788026
seq2: B6Ng01-038A05.g_69_1110 (reverse)

seq1  TACAGTTGTATTCATGTAAATGTCTCAAACTGATTGGACCCTCTAAAGTA  50
      ||||| ||| ||||||| |||||||| |||||| |||| ||| |||||| 
seq2  TACAG-TGT-TTCATGT-AATGTCTC-AACTGAATGGA-CCTTTAAAGT-  44

seq1  ACTGAAGGAAAACTTTTCTCTTAGTCTTTCCTTTATGGCACGTGACATAG  100
      ||||||||||||||||  ||| ||||||| ||||||| ||||||||||||
seq2  ACTGAAGGAAAACTTTCTTCTAAGTCTTT-CTTTATGACACGTGACATAG  93

seq1  CCTAACCACAGCAGAAAGCTTAAAATGTGTTTTACAGCAAAGCTTTCTCC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-ACCACAGCAGAAAGCTTAAAATGTGTTTTACAGCAAAGCTTTCTCC  142

seq1  ACACATTTAAGCATTAGTTCATGCTTAAGGTTTTTCTATAAACAGAAAAA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTT-AGCATTAGTTCATGCTTAAGGTTTTTCTATAAACAGAAAAA  191

seq1  CTTCCTTGATCAAGCAAACATGATGTCTGTGAAAATATCTAACACAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGATCAAGCAAACATGATGTCTGTGAAAATATCTAACACAAGTT  241

seq1  AAACAAGCAGGCTTCCAGATAATAGATTATTTTACACAATAATCACCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCAGGCTTCCAGATAATAGATTATTTTACACAATAATCACCGTA  291

seq1  CTAAATTACATAATTGGTAAAATAGACATTTGAGAAACTTCACTCTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTACATAATTGGTAAAATAGACATTTGAGAAACTTCACTCTTTAG  341

seq1  AGCAGTTTAATATAATACACATTTTGTATTTCCAAAAATGTATGTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTAATATAATACACATTTTGTATTTCCAAAAATGTATGTAATTT  391

seq1  ATTTCTATTATAAAGATTTTTTTCAGTTAGTTCATTATAAGACCCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTATAAAGATTTTTTTCAGTTAGTTCATTATAAGACCCTTTAC  441

seq1  CTCTCAATTGATTGGCATCACAGAAACCTGTGGGGTTTTGCCCTACTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATTGATTGGCATCACAGAAACCTGTGGGGTTTTGCCCTACTTGG  491

seq1  AGAAGGCACGTGTACTGGCTGGTTTTGTGTCAACTTGACATCAGATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCACGTGTACTGGCTGGTTTTGTGTCAACTTGACATCAGATGGAG  541

seq1  TTATCACAAAGAAAGGAGCTTCAGCTGAGAAAATCCCTCCACGAGATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAAAGAAAGGAGCTTCAGCTGAGAAAATCCCTCCACGAGATCCA  591

seq1  AATATAAGGCATTTTCTCAATGAGTGATCAAGAGGGGAGGGCCCCTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGGCATTTTCTCAATGAGTGATCAAGAGGGGAGGGCCCCTTATG  641

seq1  GGTGGTACCATCCTTGGGCTGGTGGTCTTGGGTTCTATAAGAAAGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTACCATCCTTGGGCTGGTGGTCTTGGGTTCTATAAGAAAGCAAGA  691

seq1  TGAGCAACCCTGGGGAAGCAAGCCAGTAAGTAACATCCCTCCATGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACCCTGGGGAAGCAAGCCAGTAAGTAACATCCCTCCATGGCTTC  741

seq1  TGCATCAGCTCCTGTTTCCTAATCTTCTTGAGTTCCAGTCCTAACTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTCCTGTTTCCTAATCTTCTTGAGTTCCAGTCCTAACTTCCT  791

seq1  TTGGTAATGAACCTCAACATGGAAGTGTAAGCTGAATAAACCCTTTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATGAACCTCAACATGGAAGTGTAAGCTGAATAAACCCTTTCCTC  841

seq1  CCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACCCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGAAATAGAAACCCTGAA  891

seq1  TAAGACATCATGCTACAACAAAAAGTTACTTGCACAGTGATGTGCTAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATCATGCTACAACAAAAAGTTACTTGCACAGTGATGTGCTAGGC  941

seq1  CTTGTACGTACTTGCTCCCAAATGCTGATTGTTACATTTTGAGAAGATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACGTACTTGCTCCCAAATGCTGATTGTTACATTTTGAGAAGATTT  991

seq1  GTGAGCCCGAACTTAAGCAGAACACTAGTGGAAAAAATTAGAAAAGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCCGAACTTAAGCAGAACACTAGTGGAAAAAATTAGAAAAGAATT  1041

seq1  C  1051
      |
seq2  C  1042