BAC Information

Click to search

BAC

Clone NameB6Ng01-038J05
Chromosome6 (Build37)
Map Location 137,064,956 - 137,221,871
singlet/doubletdoublet
Overlap geneRerg, Ptpro
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h
Downstream geneEps8, Strap, Dera, 9830102E05Rik, Mgst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038J05.bB6Ng01-038J05.g
ACCDH866100DH866101
length1,073989
definitionDH866100|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J05, 5' end.DH866101|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,064,956 - 137,066,025)(137,220,879 - 137,221,871)
sequence
gaattccactcattgcctcggcttgatgaaagcacgccctgatatctgac
taaatgtcgtcttttttaggtgtgcctgtgaagttgttttcagaaagact
ctggtttgaactaagaggctgagcaaggagacagtggctgggctggagag
atgggccaagtggtaaagcgcctcctgggcaagcatgagtggctgacttc
tatctcctgaacctccttaagaaagctgggggctatccccagcaatgtcc
ctagacagaggtggattgctggcctcgtgacacaggtacagacacagata
gatacacatgcaaacatgtgatccctctctctctctctctctctctctct
ctctctcacacacacacacacacacacacacacaaatatacatatacaca
aaagatcaccctcacctcccaggtgggcagcatctattccttttgactag
gtcagggaaaagagaaggagggttttctcttctgtctgtttctgagcttg
acactgaactcctgtccatggtgcatctggtccacaggccttcacacttg
tgttagaatctgaaccatctcatgagactcctgggtgggcccccaactgc
agatagccaactgtggaatcaatgatgtaagccattccttgtaattaatc
tcacttcgcatgtatatcttactggttctattcttctagagaatgctaac
acagcaaatccctatgtatacagaatttttatttttatgagctcctagct
gggcaagtatctgacaccaattcctgggcactgtcagacttcctttctaa
atgattaactcctggtttttacagagaccacatgccaaggatattaaaag
aagccatgcatacacatgcactcttatgagaaagggacacatcactgact
aaaggtctgtgggaatgagtgtgtgtataaagtcagagatttgcaaaaca
agagctcagaacaagcagatgtaagaccaggcatgcagaagtatttggtg
cattgcatgtatgcctatgactgtgtggaattgtgcatgctcaccatatg
gtgcctcaagtgagtactgtgtg
gaattcacaaaacttaaaagcagtagggggaaggggtgtgggaagatatt
aaggctgcatctctgagctgtagaaaaggcttttcccatgcctttgtcct
tcagtggttttcaccctatttctcaagaccagaagaggaaggcaacatcc
ccagtagatgtactcacattgtaatgcggtcactgctggattgtgagtgg
aatggtgtgagttgcctgcagaagagatccaggagtgtgcatgcctccag
ccagagcacacactgcagttgtgctcggctgctttctaggatcactccaa
agcagtgagttggaggaggaaaggtggagaaagggtggactccagagata
gagcatggaccagaaacatagagaccggggaagagagagggaaagatggg
gtaagaagacaggtggaatgaagacaggatggttctcagctgaactgttc
agctccttggatccctagaacagttttgtacaatgatgaaaatcatacgg
agtttggaccctgggaaatgaaatggccaacaatggggtggttctcagca
ctgtaagcagaggaatttttgggcaacagcactgtgttaaagtattcagg
gtggttttatcatggaagtatggtgccacggaagtgagagatcggcatgt
taggccatctggtgagaggcaatgtgtcaatctcccagatggtttgtgaa
aaaagaaagactagatgctgaatggagatcagcatatgaaaagagccacg
gaatcgcaaatgtacggaaagcctgttcttctggggagttgtctgaaaac
ttcacaaagtactcaccacgctgatcttacatgatcggaaagatccgaat
tgtcaacatggaacagtttcaataatgcacaccataccttccctcgcttc
ttttaccagcaatggtggtactgggaagaaacattttatccctttcactg
aattgtttgattcattcagtttttacagagatttgtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137064956_137066025
seq2: B6Ng01-038J05.b_44_1116

seq1  GAATTCCACTCATTGCCTCGGCTTGATGAAAGCACGCCCTGATATCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCATTGCCTCGGCTTGATGAAAGCACGCCCTGATATCTGAC  50

seq1  TAAATGTCGTCTTTTTTAGGTGTGCCTGTGAAGTTGTTTTCAGAAAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCGTCTTTTTTAGGTGTGCCTGTGAAGTTGTTTTCAGAAAGACT  100

seq1  CTGGTTTGAACTAAGAGGCTGAGCAAGGAGACAGTGGCTGGGCTGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGAACTAAGAGGCTGAGCAAGGAGACAGTGGCTGGGCTGGAGAG  150

seq1  ATGGGCCAAGTGGTAAAGCGCCTCCTGGGCAAGCATGAGTGGCTGACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAAGTGGTAAAGCGCCTCCTGGGCAAGCATGAGTGGCTGACTTC  200

seq1  TATCTCCTGAACCTCCTTAAGAAAGCTGGGGGCTATCCCCAGCAATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTGAACCTCCTTAAGAAAGCTGGGGGCTATCCCCAGCAATGTCC  250

seq1  CTAGACAGAGGTGGATTGCTGGCCTCGTGACACAGGTACAGACACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGAGGTGGATTGCTGGCCTCGTGACACAGGTACAGACACAGATA  300

seq1  GATACACATGCAAACATGTGATCCCTCTCTCTCTCTCTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACATGCAAACATGTGATCCCTCTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  CTCTCTCACACACACACACACACACACACACACAAATATACATATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACACACACACACACACACACACACACAAATATACATATACACA  400

seq1  AAAGATCACCCTCACCTCCCAGGTGGGCAGCATCTATTCCTTTTGACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCACCCTCACCTCCCAGGTGGGCAGCATCTATTCCTTTTGACTAG  450

seq1  GTCAGGGAAAAGAGAAGGAGGGTTTTCTCTTCTGTCTGTTTCTGAGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAAAAGAGAAGGAGGGTTTTCTCTTCTGTCTGTTTCTGAGCTTG  500

seq1  ACACTGAACTCCTGTCCATGGTGCATCTGGTCCACAGGCCTTCACACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAACTCCTGTCCATGGTGCATCTGGTCCACAGGCCTTCACACTTG  550

seq1  TGTTAGAATCTGAACCATCTCATGAGACTCCTGGGTGGGCCCCCAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAATCTGAACCATCTCATGAGACTCCTGGGTGGGCCCCCAACTGC  600

seq1  AGATAGCCAACTGTGGAATCAATGATGTAAGCCATTCCTTGTAATTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCAACTGTGGAATCAATGATGTAAGCCATTCCTTGTAATTAATC  650

seq1  TCACTTCGCATGTATATCTTACTGGTTCTATTCTTCTAGAGAATGCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCGCATGTATATCTTACTGGTTCTATTCTTCTAGAGAATGCTAAC  700

seq1  ACAGCAAATCCCTATGTATACAGAATTTTTATTTTTATGAGCTCCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATCCCTATGTATACAGAATTTTTATTTTTATGAGCTCCTAGCT  750

seq1  GGGCAAGTATCTGACACCAATTCCTGGGCACTGTCAGACTTCCTTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTATCTGACACCAATTCCTGGGCACTGTCAGACTTCCTTTCTAA  800

seq1  ATGATTAACTCCTGGTTTTTACAGAGACCACATGCCAAGGATATTAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAACTCCTGGTTTTTACAGAGACCACATGCCAAGGATATTAAAAG  850

seq1  AAGCCATGCATACACATGCACTCTTATGAG-AAGGGACACATCACTGACT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCCATGCATACACATGCACTCTTATGAGAAAGGGACACATCACTGACT  900

seq1  AAAGGTTCTGTGGGAATGAGTGTGTGTATAAAGTCAGAGATTTGCAAAAC  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGG-TCTGTGGGAATGAGTGTGTGTATAAAGTCAGAGATTTGCAAAAC  949

seq1  AAGAGCTCAGAACAAGCAGATGTAAGACCAGGCATGCAG-AGTATTTGGT  998
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAGCTCAGAACAAGCAGATGTAAGACCAGGCATGCAGAAGTATTTGGT  999

seq1  GCATTGCATGTATGCCTATGACTGTGTGGATTTGTGCATGCTCA-CATAT  1047
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GCATTGCATGTATGCCTATGACTGTGTGGAATTGTGCATGCTCACCATAT  1049

seq1  -GTG-CTCGAGTGAGTACGTGTGTG  1070
       ||| ||| ||||||||| ||||||
seq2  GGTGCCTCAAGTGAGTAC-TGTGTG  1073

seq1: chr6_137220879_137221871
seq2: B6Ng01-038J05.g_67_1055 (reverse)

seq1  TGCACAAAACTCCTGTAAAACCTGAATGAATTCAAACAAATCAGTGAAAG  50
      |||||||| || |||||||| ||||||||| |||||||| ||||||||||
seq2  TGCACAAATCT-CTGTAAAAACTGAATGAA-TCAAACAATTCAGTGAAAG  48

seq1  GGATAATATTGTCTCCTTCCCAGTACCACCATTGCTGGTTAAAAGAAGCG  100
      |||||| | ||| | ||||||||||||||||||||||| |||||||||||
seq2  GGATAA-AATGT-TTCTTCCCAGTACCACCATTGCTGG-TAAAAGAAGCG  95

seq1  AAGGCAGGTATGGTGTGCATTATTGAAACTGTTCCATGTTGACAATTCGG  150
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGTATGGTGTGCATTATTGAAACTGTTCCATGTTGACAATTCGG  145

seq1  ATCTTTCCGATCATGTAAGATCAGCGTGGTGAGTACTTTGTGAAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCGATCATGTAAGATCAGCGTGGTGAGTACTTTGTGAAGTTTTC  195

seq1  AGACAACTCCCCAGAAGAACAGGCTTTCCGTACATTTGCGATTCCGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTCCCCAGAAGAACAGGCTTTCCGTACATTTGCGATTCCGTGGC  245

seq1  TCTTTTCATATGCTGATCTCCATTCAGCATCTAGTCTTTCTTTTTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATATGCTGATCTCCATTCAGCATCTAGTCTTTCTTTTTTCACA  295

seq1  AACCATCTGGGAGATTGACACATTGCCTCTCACCAGATGGCCTAACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGGGAGATTGACACATTGCCTCTCACCAGATGGCCTAACATGC  345

seq1  CGATCTCTCACTTCCGTGGCACCATACTTCCATGAT-AAACCACCCTGAA  399
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGATCTCTCACTTCCGTGGCACCATACTTCCATGATAAAACCACCCTGAA  395

seq1  TACTTTAACACAGTGCTGTTGCCCAAAAATTCCTCTGCTTACAGTGCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAACACAGTGCTGTTGCCCAAAAATTCCTCTGCTTACAGTGCTGA  445

seq1  GAACCACCCCATTGTTGGCCATTTCATTTCCCAGGGTCCAAACTCCGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACCCCATTGTTGGCCATTTCATTTCCCAGGGTCCAAACTCCGTAT  495

seq1  GATTTTCATCATTGTACAAAACTGTTCTAGGGATCCAAGGAGCTGAACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATCATTGTACAAAACTGTTCTAGGGATCCAAGGAGCTGAACAG  545

seq1  TTCAGCTGAGAACCATCCTGTCTTCATTCCACCTGTCTTCTTACCCCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGAGAACCATCCTGTCTTCATTCCACCTGTCTTCTTACCCCATC  595

seq1  TTTCCCTCTCTCTTCCCCGGTCTCTATGTTTCTGGTCCATGCTCTATCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTCTCTTCCCCGGTCTCTATGTTTCTGGTCCATGCTCTATCTC  645

seq1  TGGAGTCCACCCTTTCTCCACCTTTCCTCCTCCAACTCACTGCTTTGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCACCCTTTCTCCACCTTTCCTCCTCCAACTCACTGCTTTGGAG  695

seq1  TGATCCTAGAAAGCAGCCGAGCACAACTGCAGTGTGTGCTCTGGCTGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTAGAAAGCAGCCGAGCACAACTGCAGTGTGTGCTCTGGCTGGAG  745

seq1  GCATGCACACTCCTGGATCTCTTCTGCAGGCAACTCACACCATTCCACTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACACTCCTGGATCTCTTCTGCAGGCAACTCACACCATTCCACTC  795

seq1  ACAATCCAGCAGTGACCGCATTACAATGTGAGTACATCTACTGGGGATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAGCAGTGACCGCATTACAATGTGAGTACATCTACTGGGGATGT  845

seq1  TGCCTTCCTCTTCTGGTCTTGAGAAATAGGGTGAAAACCACTGAAGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCTCTTCTGGTCTTGAGAAATAGGGTGAAAACCACTGAAGGACA  895

seq1  AAGGCATGGGAAAAGCCTTTTCTACAGCTCAGAGATGCAGCCTTAATATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGGGAAAAGCCTTTTCTACAGCTCAGAGATGCAGCCTTAATATC  945

seq1  TTCCCACACCCCTTCCCCCTACTGCTTTTAAGTTTTGTGAATTC  993
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACACCCCTTCCCCCTACTGCTTTTAAGTTTTGTGAATTC  989