BAC Information

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BAC

Clone NameB6Ng01-038N09
Chromosome6 (Build37)
Map Location 135,076,079 - 135,222,785
singlet/doubletdoublet
Overlap geneLOC100043668, Hebp1, 8430419L09Rik, Gsg1
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d
Downstream genePbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038N09.bB6Ng01-038N09.g
ACCDH866281DH866282
length1,143568
definitionDH866281|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N09, 5' end.DH866282|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,221,628 - 135,222,785)(135,076,079 - 135,076,652)
sequence
gaattctcctgtctctgcctcccagctctccacagggctgccggaattac
acacgtgggctactatgtctggtttcttgtgggttctgaagattcagaca
cgggttattaggttattattcttgcatggcaagcacttttgaaccatctc
ttaatctataggaaaacattttcaaatattctgggaagagaccaggcaca
taatttatatacatcgacaccatttaataatccttccttcttgggtgtta
tctttagctctatgatctgattgttcgtgtgtgtgtgtgtgaggacaagg
gtcacctcccccacctcttctggatcaggtatctatacttagctcctgag
cagaccacaaaagatcccacaaatctttgttagttgactgtgtctggtga
attgtatctcgcttgtcattgttctgcataactattaccggggaggcttc
acgaaaagtcagtagggaagaatgtggcttgcttcaaatcagttttaccg
ctgctttgaagagggcaggctagagagagggcgggctggtaagagctgcc
tgcagaaaggcaagcccactgaatttatcggaggctgcctgagcagtaaa
tgtgctcataggacaactgccttgagtgtattatgaaacacaaacttaag
tattaatatatgcaaaatgaactgcagacattcatgttatttcttccctc
cagttcatcatgaggagcaggccatctggcctcccacaggaacagttagg
tcaaggcccagaagccacatcatctccctgttttcgggatctctgagcca
caaaacatgttatctatttcaaaaagatgttaatggagtcataagaccta
agctattacagtcaacaagcaatacatctaacgagcaaaacaaagtcatg
ggagcccaaatacgctggtgttacaaatggatgttgtatatttaggaagc
tatttatttcctctaagatattgtgtgtgggatgaaggcagtgccttggc
ctgagcttgtagtcaggctacgatcttcagactcggggtaaactaagatg
aaaactcccctgtcagatgatgcaaaggtcagtgtccgcctgctgaagcg
tcagtctgatcagttctgctgtctcggcgaagatatttcttcc
tcagtcaaaacttctggtggacaagggtgctccttccagggagatttctc
agtaacagagttcagtagggaacggtagcagagaacttcaccaagtctgg
cactcagcactcaacagaaatgtctgggggatctgctaacgtatcgctga
gacagccaggccagagactggggcatttttctaatgcaggacaaacagta
gtaatctcagttagaaggagtttagcatggctgtcctctgagaggctcta
cctagcgtctgactgagacagatacagatagtcacagccaagcattcggt
ggaagtcagggacccctatggaagagttaggggaaggattgaaggagatg
aaggggatgacaacaccatatgaagaccaactgtgtcaactaacctgaac
cccagggagatcccagagactaagccaccaaccaaaaagcatatgtatat
atatacatggggcacatatgtagcagagggctgttttgtctggcctcaat
gggagaacaggtgtctaatcctgtagagacttgatgccccagggtgggga
aaatatgggggtggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135221628_135222785
seq2: B6Ng01-038N09.b_50_1192 (reverse)

seq1  GGAAGAAATATCACCTCCGCAGTGACAGCAGAACATGGCTCAGAACTGAC  50
      |||||||||||   || ||| | |||||||||||   | |||| ||||||
seq2  GGAAGAAATAT---CTTCGCCGAGACAGCAGAAC--TGATCAG-ACTGAC  44

seq1  GCCTCAGCA-GCTGACACCCTGACCTTTGCCATCATCTGACAGAGAGTTT  99
      || |||||| || ||||  |||||||||| ||||||||||||| |   ||
seq2  GCTTCAGCAGGCGGACA--CTGACCTTTG-CATCATCTGACAGGGGAGTT  91

seq1  TTCATCCTTAGTTTACCCCGAGTCTGAGGATCGTAGCCTGACTACAAGCT  149
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCAT-CTTAGTTTACCCCGAGTCTGAAGATCGTAGCCTGACTACAAGCT  140

seq1  CAGGCCAAGGCACTGCCCTTCATCCCACACAACAATTATCTTAGAGGAAA  199
      ||||||||||||||| |||||||||||||| |||| ||||||||||||||
seq2  CAGGCCAAGGCACTG-CCTTCATCCCACAC-ACAA-TATCTTAGAGGAAA  187

seq1  TAAATAGCTTCCTAAATAATACAACATCCATTTGTAACACCAGCCTTATT  249
      ||||||||||||||||| ||||||||||||||||||||||||| | ||||
seq2  TAAATAGCTTCCTAAAT-ATACAACATCCATTTGTAACACCAG-CGTATT  235

seq1  TGGGCTCCCATGACTTTGTTTTTGCTCGTTAGATGTATTGCTTGTTGACT  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGGCTCCCATGACTTTG-TTTTGCTCGTTAGATGTATTGCTTGTTGACT  284

seq1  GTAATAGCTTAGGTCTTATGACTCCATTAACATCTTTTTGAAATAGATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCTTAGGTCTTATGACTCCATTAACATCTTTTTGAAATAGATAA  334

seq1  CATGTTTTGTGGCTCAGAGATCCCGAAAACAGGGAGATGATGTGGCTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTGTGGCTCAGAGATCCCGAAAACAGGGAGATGATGTGGCTTCT  384

seq1  GGGCCTTGACCTAACTGTTCCTGTGGGAGGCCAGATGGCCTGCTCCTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGACCTAACTGTTCCTGTGGGAGGCCAGATGGCCTGCTCCTCAT  434

seq1  GATGAACTGGAGGGAAGAAATAACATGAATGTCTGCAGTTCATTTTGCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTGGAGGGAAGAAATAACATGAATGTCTGCAGTTCATTTTGCAT  484

seq1  ATATTAATACTTAAGTTTGTGTTTCATAATACACTCAAGGCAGTTGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATACTTAAGTTTGTGTTTCATAATACACTCAAGGCAGTTGTCCT  534

seq1  ATGAGCACATTTACTGCTCAGGCAGCCTCCGATAAATTCAGTGGGCTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACATTTACTGCTCAGGCAGCCTCCGATAAATTCAGTGGGCTTGC  584

seq1  CTTTCTGCAGGCAGCTCTTACCAGCCCGCCCTCTCTCTAGCCTGCCCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCAGGCAGCTCTTACCAGCCCGCCCTCTCTCTAGCCTGCCCTCT  634

seq1  TCAAAGCAGCGGTAAAACTGATTTGAAGCAAGCCACATTCTTCCCTACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAGCGGTAAAACTGATTTGAAGCAAGCCACATTCTTCCCTACTG  684

seq1  ACTTTTCGTGAAGCCTCCCCGGTAATAGTTATGCAGAACAATGACAAGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCGTGAAGCCTCCCCGGTAATAGTTATGCAGAACAATGACAAGCG  734

seq1  AGATACAATTCACCAGACACAGTCAACTAACAAAGATTTGTGGGATCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAATTCACCAGACACAGTCAACTAACAAAGATTTGTGGGATCTTT  784

seq1  TGTGGTCTGCTCAGGAGCTAAGTATAGATACCTGATCCAGAAGAGGTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGCTCAGGAGCTAAGTATAGATACCTGATCCAGAAGAGGTGGG  834

seq1  GGAGGTGACCCTTGTCCTCACACACACACACACGAACAATCAGATCATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGACCCTTGTCCTCACACACACACACACGAACAATCAGATCATAG  884

seq1  AGCTAAAGATAACACCCAAGAAGGAAGGATTATTAAATGGTGTCGATGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGATAACACCCAAGAAGGAAGGATTATTAAATGGTGTCGATGTA  934

seq1  TATAAATTATGTGCCTGGTCTCTTCCCAGAATATTTGAAAATGTTTTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTATGTGCCTGGTCTCTTCCCAGAATATTTGAAAATGTTTTCCT  984

seq1  ATAGATTAAGAGATGGTTCAAAAGTGCTTGCCATGCAAGAATAATAACCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAAGAGATGGTTCAAAAGTGCTTGCCATGCAAGAATAATAACCT  1034

seq1  AATAACCCGTGTCTGAATCTTCAGAACCCACAAGAAACCAGACATAGTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCGTGTCTGAATCTTCAGAACCCACAAGAAACCAGACATAGTAG  1084

seq1  CCCACGTGTGTAATTCCGGCAGCCCTGTGGAGAGCTGGGAGGCAGAGACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTGTGTAATTCCGGCAGCCCTGTGGAGAGCTGGGAGGCAGAGACA  1134

seq1  GGAGAATTC  1158
      |||||||||
seq2  GGAGAATTC  1143

seq1: chr6_135076079_135076652
seq2: B6Ng01-038N09.g_67_640

seq1  GAATTCTCAGTCAAAACTTCTGGTGGACAAGGGTGCTCCTTCCAGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCAAAACTTCTGGTGGACAAGGGTGCTCCTTCCAGGGAGA  50

seq1  TTTCTCAGTAACAGAGTTCAGTAGGGAACGGTAGCAGAGAACTTCACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTAACAGAGTTCAGTAGGGAACGGTAGCAGAGAACTTCACCAA  100

seq1  GTCTGGCACTCAGCACTCAACAGAAATGTCTGGGGGATCTGCTAACGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCACTCAGCACTCAACAGAAATGTCTGGGGGATCTGCTAACGTAT  150

seq1  CGCTGAGACAGCCAGGCCAGAGACTGGGGCATTTTTCTAATGCAGGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGACAGCCAGGCCAGAGACTGGGGCATTTTTCTAATGCAGGACAA  200

seq1  ACAGTAGTAATCTCAGTTAGAAGGAGTTTAGCATGGCTGTCCTCTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGTAATCTCAGTTAGAAGGAGTTTAGCATGGCTGTCCTCTGAGAG  250

seq1  GCTCTACCTAGCGTCTGACTGAGACAGATACAGATAGTCACAGCCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACCTAGCGTCTGACTGAGACAGATACAGATAGTCACAGCCAAGCA  300

seq1  TTCGGTGGAAGTCAGGGACCCCTATGGAAGAGTTAGGGGAAGGATTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGGAAGTCAGGGACCCCTATGGAAGAGTTAGGGGAAGGATTGAAG  350

seq1  GAGATGAAGGGGATGACAACACCATATGAAGACCAACTGTGTCAACTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAGGGGATGACAACACCATATGAAGACCAACTGTGTCAACTAAC  400

seq1  CTGAACCCCAGGGAGATCCCAGAGACTAAGCCACCAACCAAAAAGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCCAGGGAGATCCCAGAGACTAAGCCACCAACCAAAAAGCATAT  450

seq1  GTATATATATACATGGGGCACATATGTAGCAGAGGGCTGTTTTGTCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATATACATGGGGCACATATGTAGCAGAGGGCTGTTTTGTCTGGC  500

seq1  CTCAATGGGAGAACAGGTGTCTAATCCTGTAGAGACTTGATGCCCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGGAGAACAGGTGTCTAATCCTGTAGAGACTTGATGCCCCAGGG  550

seq1  TGGGGAAAATATGGGGGTGGGGTG  574
      ||||||||||||||||||||||||
seq2  TGGGGAAAATATGGGGGTGGGGTG  574