BAC Information

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BAC

Clone NameB6Ng01-039B18
Chromosome6 (Build37)
Map Location 54,900,241 - 54,989,032
singlet/doubletdoublet
Overlap geneNod1, A030007L17Rik, Gars
Upstream geneCpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2
Downstream geneCrhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039B18.bB6Ng01-039B18.g
ACCDH866469DH866470
length4871,056
definitionDH866469|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B18, 5' end.DH866470|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,988,540 - 54,989,032)(54,900,241 - 54,901,306)
sequence
ctcgaagctgcagcacctcagctccaatgaattatccttaagacaggatt
ccaccctccttagctagacaaacgattgcatcaggcgccagagcaggcgc
aacccgaccggtgtttacagctagtaggtcatggatgccgggccctactg
taagctctggctctcactgggtgtgggtatcattccaaatacttttctcc
tttccctcttaagtctgatcaccaccactcagtgctacagtaaaaaaagg
agatctgcattaaatccccagattctccagctaagaaacctcccttccct
tccgcaaaatgacattttcaggtgttccaccctaagaatggatgacttca
ctgagtggctcggtcagtccatctacaatttccagcttgatccgaaagct
cgctggttccagacactctcttcagaaggcagaaagatgacaggagaggg
atcatgaattcgcatcagtattggaggggggtggggg
gaattccacacccctaagccccttaccccataaaaacccctagctttcga
gcctcgtggccggcatctgttatctcctgtgtgggatacatgtcggtcca
gagctccgtaattaaacgtcctcatgtaattacagcaagttgggtccttg
tgtttctttgggtgctctcacactcccgagactagagtagggggtccctg
aaaggggaccttacaagggaggatgaacaacaacaatcataattctgttg
taatgtatatttaatctcagttgggggtttctaccccgcttttgatcgtt
cagttcccaggtaaaacacacaaattttttatacttatactaaactttaa
ccagcattacagctgggcagatatctaccctctatgccgttatggccact
tctctgccaacaaccccaagatatgacttgtcatattccttctaggccac
tcttactcagactggctaaccctcagggccagttcccaccatctttagcc
catggtgtcttctcttccctccaccttctctcttcctcttggtcctcctc
agaccccaagcctgggaactgaaaccccacctatctctcttctgcccagc
tataggctgaaggcatctttatttaacaaatagatttaaattaaggagca
aggttactcttggtatacttgaagatttcctcctcgctgaagcaaccaga
ccttgggggtcagtatttagtatcacaacacatagcaacagaccaaacct
ccacacaattcactgctgtcggtggtttgctgcaccactaaatgtgttca
tcagtgttgctgtcactgcagcaagagaacaatgccagggaagaaagatt
tattctgcctccttgttttagtccttctgatggagaaggcatggcagagt
agagcagctctgtctcacaagtagaccggggagagagagggggagagagg
gaagaaagtggtcactagtacctacttcagaacccatggctctcagaagt
gacaccaaaagacatcagctgatataccgaattcaatagctggtcaccta
agtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54988540_54989032
seq2: B6Ng01-039B18.b_47_539 (reverse)

seq1  CCCCCACCCCCCTCCAATACTGATGCGAATTCATGATCCCTCTCCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCTCCAATACTGATGCGAATTCATGATCCCTCTCCTGTCA  50

seq1  TCTTTCTGCCTTCTGAAGAGAGTGTCTGGAACCAGCGAGCTTTCGGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGCCTTCTGAAGAGAGTGTCTGGAACCAGCGAGCTTTCGGATCA  100

seq1  AGCTGGAAATTGTAGATGGACTGACCGAGCCACTCAGTGAAGTCATCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAATTGTAGATGGACTGACCGAGCCACTCAGTGAAGTCATCCAT  150

seq1  TCTTAGGGTGGAACACCTGAAAATGTCATTTTGCGGAAGGGAAGGGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGTGGAACACCTGAAAATGTCATTTTGCGGAAGGGAAGGGAGGT  200

seq1  TTCTTAGCTGGAGAATCTGGGGATTTAATGCAGATCTCCTTTTTTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCTGGAGAATCTGGGGATTTAATGCAGATCTCCTTTTTTTACTG  250

seq1  TAGCACTGAGTGGTGGTGATCAGACTTAAGAGGGAAAGGAGAAAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGAGTGGTGGTGATCAGACTTAAGAGGGAAAGGAGAAAAGTATT  300

seq1  TGGAATGATACCCACACCCAGTGAGAGCCAGAGCTTACAGTAGGGCCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGATACCCACACCCAGTGAGAGCCAGAGCTTACAGTAGGGCCCGG  350

seq1  CATCCATGACCTACTAGCTGTAAACACCGGTCGGGTTGCGCCTGCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGACCTACTAGCTGTAAACACCGGTCGGGTTGCGCCTGCTCTGG  400

seq1  CGCCTGATGCAATCGTTTGTCTAGCTAAGGAGGGTGGAATCCTGTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGATGCAATCGTTTGTCTAGCTAAGGAGGGTGGAATCCTGTCTTAA  450

seq1  GGATAATTCATTGGAGCTGAGGTGCTGCAGCTTCGAGGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTCATTGGAGCTGAGGTGCTGCAGCTTCGAGGAATTC  493

seq1: chr6_54900241_54901306
seq2: B6Ng01-039B18.g_67_1122

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCGA  50

seq1  GCCTCGTGGCCGGCATCTGTTATCTCCTGTGTGGGATACATGTCGGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGGCCGGCATCTGTTATCTCCTGTGTGGGATACATGTCGGTCCA  100

seq1  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCAAGTTGGGTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCAAGTTGGGTCCTTG  150

seq1  TGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTAGGGGGTCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTAGGGGGTCCCTG  200

seq1  AAAGGGGACCTTACAAGGGAGGATGAACAACAACAATCATAATTCTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGACCTTACAAGGGAGGATGAACAACAACAATCATAATTCTGTTG  250

seq1  TAATGTATATTTAATCTCAGTTGGGGGTTTCTACCCCGCTTTTGATCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATATTTAATCTCAGTTGGGGGTTTCTACCCCGCTTTTGATCGTT  300

seq1  CAGTTCCCAGGTAAAACACACAAATTTTTTATACTTATACTAAACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCAGGTAAAACACACAAATTTTTTATACTTATACTAAACTTTAA  350

seq1  CCAGCATTACAGCTGGGCAGATATCTACCCTCTATGCCGTTATGGCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTACAGCTGGGCAGATATCTACCCTCTATGCCGTTATGGCCACT  400

seq1  TCTCTGCCAACAACCCCAAGATATGACTTGTCATATTCCTTCTAGGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCAACAACCCCAAGATATGACTTGTCATATTCCTTCTAGGCCAC  450

seq1  TCTTACTCAGACTGGCTAACCCTCAGGGCCAGTTCCCACCATCTTTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCAGACTGGCTAACCCTCAGGGCCAGTTCCCACCATCTTTAGCC  500

seq1  CATGGTGTCTTCTCTTCCCTCCACCTTCTCTCTTCCTCTTGGTCCTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCTTCTCTTCCCTCCACCTTCTCTCTTCCTCTTGGTCCTCCTC  550

seq1  AGACCCCAAGCCTGGGAACTGAAACCCCACCTATCTCTCTTCTGCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAAGCCTGGGAACTGAAACCCCACCTATCTCTCTTCTGCCCAGC  600

seq1  TATAGGCTGAAGGCATCTTTATTTAACAAATAGATTTAAATTAAGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTGAAGGCATCTTTATTTAACAAATAGATTTAAATTAAGGAGCA  650

seq1  AGGTTACTCTTGGTATACTTGAAGATTTCCTCCTCGCTGAAGCAACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTCTTGGTATACTTGAAGATTTCCTCCTCGCTGAAGCAACCAGA  700

seq1  CCTTGGGGGTCAGTATTTAGTATCACAACACATAGCAACAGACCAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGGTCAGTATTTAGTATCACAACACATAGCAACAGACCAAACCT  750

seq1  CCACACAATTCACTGCTGTCGGTGGTTTGCTGCACCACTAAATGTGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAATTCACTGCTGTCGGTGGTTTGCTGCACCACTAAATGTGTTCA  800

seq1  TCAGTGTTGCTGTCACTGCAGCAAGAGAACAATGCCAGGGAAGAAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTGCTGTCACTGCAGCAAGAGAACAATGCCAGGGAAGAAAGATT  850

seq1  TATTCTGCCTCCTTGTTTTAGTCCTTCTGATGGAGAAGGCATGGCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCCTCCTTGTTTTAGTCCTTCTGATGGAGAAGGCATGGCAGAGT  900

seq1  AGAGCAGCTCTGTCTCCACAAGTAGACCGGGGAGAAGAGAGGGGGAGAGA  950
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AGAGCAGCTCTGTCT-CACAAGTAGACCGGGGAG-AGAGAGGGGGAGAGA  948

seq1  GGGAAGAAAGTGGTCACTAGGACCCACTTCAGAACCCATGGCTTCTTCAG  1000
      |||||||||||||||||||| ||| ||||||||||||||||||   ||| 
seq2  GGGAAGAAAGTGGTCACTAGTACCTACTTCAGAACCCATGGCT--CTCA-  995

seq1  GAAGTGACACCCAAAAGACATCAAGCTGATAATACCGAATTCAAATAGCT  1050
      ||||||||| |||||||||||| ||||||| ||||||||||| |||||||
seq2  GAAGTGACA-CCAAAAGACATC-AGCTGAT-ATACCGAATTC-AATAGCT  1041

seq1  GGTCACACTGAGTCTC  1066
      |||||| || ||||||
seq2  GGTCAC-CTAAGTCTC  1056