BAC Information

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BAC

Clone NameB6Ng01-039H06
Chromosome6 (Build37)
Map Location 72,617,344 - 72,765,665
singlet/doubletdoublet
Overlap geneTcf3
Upstream geneLOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039H06.bB6Ng01-039H06.g
ACCDH866721DH866722
length1,175860
definitionDH866721|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H06, 5' end.DH866722|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,617,344 - 72,618,542)(72,765,128 - 72,765,665)
sequence
gaattcagtaatgagttaactacttttactctgtcaagctggcaacggcc
ttttttactcctctttaattaccatgggcacttttcttgatgccctgttg
gtgggagaataaattagtaagccttttcttgtgcaatttggaggcatgta
tcaagtcttccaaaggcgtaccacctcaaggaatgtatcctaaggaaata
attaaagattcgagcaaactacagctgcaggaacgctcactgggaccatc
tacaagagctgaaagatattaaatacctcatgctacaatgatatttgagt
ttacggagcaagtgaatatttataggcatgcgaaggtacttactagacac
tctcaaggggaaaagcaggacacccagcaagtaaagaattcacttttgta
aagcagacatctttatatgtgaattgaagatctacgcggacagataggag
gatgtgggttcttctactggaccagcgggcggggtcagtttgttattcct
ccgacatcagagttgcctagaggagctatgaacccacagatttccaaccc
tcctcccctgccactcaactgttccagggcagggccctaaccttctgcct
catttaatggctccccaggtgacgtcaatgtgaggtcagagctgtcccta
catgtgccaccatgtgctcaccactgagctacaaagctccccaccaccgc
cctccaatcccatactcagcttctcctgcttctcttttatcccctagagc
aagcatccatccaaccaccgggcacttttcagtgctacagtataccagct
tctacagtctttacctgtctaagtctctccagagtattagaaggcttggt
gtagaagtttctggtacataaagggaaaatccatatccccagagcagccc
tcaccggatcttataaataaactctcagattatgcagcagacacccactc
tgggattcctggtggcacattagaagaccatcaaaccatatttctgaaca
ttcctatgtgtcaacacattctctttattttggggctgagagaggctgca
tgctcctcctagctctccacaaatccaggcctagtctttctggatcgaga
cattctgctcaagctcgaggtactttctgaaccctcttcaaagcccactc
tggatcacatggctcttgagtgacc
gaattccagaggcactgcactcaaacatgcacacaactaatcccctatcc
atacacgcataattctgaaagaaaatagagtcagttattaatttgcttgt
atgaatgttttgtctgcatgacatgtaacatgtgtgtatctggtgcccac
aagaggatagaagaagcatcagagcccctagaactagagtcatggatggt
tgtgagccatcctgtgggccctgggaacctaaaacctctgcaagagcagc
aagagctcttgattgctgagccagctctccagccccatataattaaaaag
aaaaagacacaaaggaaaaagaagcagaaacaggggggtgaggaggcagc
aggaagcaaagaaatgtgtggatccatagaaatctttattttattgtatt
ttattgtattttattttattttatttggattttcgagacagggtttctct
gtatagccctggctgtcctggaactcactctgtagaccaggctggcctca
aacttagaaatcctcctgcctctgcctcccaagtgctggcatgaaaggca
tgtgctaccatgcccagctcactttattatttcttattctttaattttaa
tttaattttatttttgtgtgtaaatgggtgttttgcctacatgtatgttt
gttctccaactgtgtgcttggatactatggagatccaaggatggcttagg
atcccctggaacagggattggtgttgtgagctgggggtaaccacgggaag
gctgggatttgaaccaggtccttctggaagagtaaatgtgcccttaaccc
ctgagccatctctccagccccaaacaattgtcttctaaggacgaacttgg
catggcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72617344_72618542
seq2: B6Ng01-039H06.b_46_1220

seq1  GAATTCAGTAATGAGTTAACTACTTTTACTCTGTCAAGCTGGCAACGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATGAGTTAACTACTTTTACTCTGTCAAGCTGGCAACGGCC  50

seq1  TTTTTTACTCCTCTTTAATTACCATGGGCACTTTTCTTGATGCCCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTCCTCTTTAATTACCATGGGCACTTTTCTTGATGCCCTGTTG  100

seq1  GTGGGAGAATAAATTAGTAAGCCTTTTCTTGTGCAATTTGGAGGCATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAATAAATTAGTAAGCCTTTTCTTGTGCAATTTGGAGGCATGTA  150

seq1  TCAAGTCTTCCAAAGGCGTACCACCTCAAGGAATGTATCCTAAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTTCCAAAGGCGTACCACCTCAAGGAATGTATCCTAAGGAAATA  200

seq1  ATTAAAGATTCGAGCAAACTACAGCTGCAGGAACGCTCACTGGGACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATTCGAGCAAACTACAGCTGCAGGAACGCTCACTGGGACCATC  250

seq1  TACAAGAGCTGAAAGATATTAAATACCTCATGCTACAATGATATTTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGCTGAAAGATATTAAATACCTCATGCTACAATGATATTTGAGT  300

seq1  TTACGGAGCAAGTGAATATTTATAGGCATGCGAAGGTACTTACTAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGAGCAAGTGAATATTTATAGGCATGCGAAGGTACTTACTAGACAC  350

seq1  TCTCAAGGGGAAAAGCAGGACACCCAGCAAGTAAAGAATTCACTTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGGAAAAGCAGGACACCCAGCAAGTAAAGAATTCACTTTTGTA  400

seq1  AAGCAGACATCTTTATATGTGAATTGAAGATCTACGCGGACAGATAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACATCTTTATATGTGAATTGAAGATCTACGCGGACAGATAGGAG  450

seq1  GATGTGGGTTCTTCTACTGGACCAGCGGGCGGGGTCAGTTTGTTATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTTCTTCTACTGGACCAGCGGGCGGGGTCAGTTTGTTATTCCT  500

seq1  CCGACATCAGAGTTGCCTAGAGGAGCTATGAACCCACAGATTTCCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACATCAGAGTTGCCTAGAGGAGCTATGAACCCACAGATTTCCAACCC  550

seq1  TCCTCCCCTGCCACTCAACTGTTCCAGGGCAGGGCCCTAACCTTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCTGCCACTCAACTGTTCCAGGGCAGGGCCCTAACCTTCTGCCT  600

seq1  CATTTAATGGCTCCCCAGGTGACGTCAATGTGAGGTCAGAGCTGTCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATGGCTCCCCAGGTGACGTCAATGTGAGGTCAGAGCTGTCCCTA  650

seq1  CATGTGCCACCATGTGCTCACCACTGAGCTACAAAGCTCCCCACCACCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCACCATGTGCTCACCACTGAGCTACAAAGCTCCCCACCACCGC  700

seq1  CCTCCAATCCCATACTCAGCTTCTCCTGCTTCTCTTTTATCCCCTAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATCCCATACTCAGCTTCTCCTGCTTCTCTTTTATCCCCTAGAGC  750

seq1  AAGCATCCATCCAACCACCGGGCACTTTTCAGTGCTACAGTATACCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCATCCAACCACCGGGCACTTTTCAGTGCTACAGTATACCAGCT  800

seq1  TCTACAGTCTTTACCTGTCTAAGTCTCTCCAGAGTATTAGAAGGCTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTCTTTACCTGTCTAAGTCTCTCCAGAGTATTAGAAGGCTTGGT  850

seq1  GTAGAAGTTTCTGGTACAT-AAGGGAAAATCCATATCCCCAGAGCAGCCC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAGAAGTTTCTGGTACATAAAGGGAAAATCCATATCCCCAGAGCAGCCC  900

seq1  TCACCGGATCTTATAAATAAACTCTCAGATTAGGCAGCAGACACCCACTC  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCACCGGATCTTATAAATAAACTCTCAGATTATGCAGCAGACACCCACTC  950

seq1  TGGGATTCCTGGTGGCACATTAGGAAGACCATCAAAACCAATTATTTCTT  999
      |||||||||||||||||||||| |||||||||| ||||||  |||||| |
seq2  TGGGATTCCTGGTGGCACATTA-GAAGACCATC-AAACCA--TATTTC-T  995

seq1  GAACATTCCTAATGGTGTCAACACATTCCTCTTTATTTTGGGGCTGAGAG  1049
      |||||||||||   ||||||||||||| ||||||||||||||||||||||
seq2  GAACATTCCTA--TGTGTCAACACATT-CTCTTTATTTTGGGGCTGAGAG  1042

seq1  AAGGGCTGCAGTGCCTCCTCCTAGCTCTCCAACCAAATCCAGGGCTAGGT  1099
      |  ||||||| || |||||||||||||||||  |||||||||| ||| ||
seq2  A--GGCTGCA-TG-CTCCTCCTAGCTCTCCA--CAAATCCAGGCCTA-GT  1085

seq1  CTTTCTGGAATTCGAGACATCCTGGCTC-AGCTCGAAGGGTACATTTCTG  1148
      |||||||||  ||||||||| || |||| |||||||  ||||| ||||||
seq2  CTTTCTGGA--TCGAGACATTCT-GCTCAAGCTCGA--GGTAC-TTTCTG  1129

seq1  AACACACTCTCAAAAGCGCATCTC-GGATTTCACATTGCTTCTTGAGTGA  1197
      |  || ||||  ||||| || ||| |||  |||||| || ||||||||||
seq2  A--ACCCTCTTCAAAGCCCA-CTCTGGA--TCACATGGC-TCTTGAGTGA  1173

seq1  CC  1199
      ||
seq2  CC  1175

seq1: chr6_72765128_72765665
seq2: B6Ng01-039H06.g_389_926 (reverse)

seq1  AGATGCCATGCCAAGTTTCGTCCTTTGAAGACAATTGTTTGGGGCTGGAG  50
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  AGATGCCATGCCAAG-TTCGTCCTTAGAAGACAATTGTTTGGGGCTGGAG  49

seq1  AGATGGCTCAGGGGTTAAGGGCACATTTACTCTTCCAG-AGGACCTGGTT  99
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGATGGCTCAGGGGTTAAGGGCACATTTACTCTTCCAGAAGGACCTGGTT  99

seq1  CAAATCCCAGCCTTCCCGTGGTTACCCCCAGCTCACAACACCAATCCCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGCCTTCCCGTGGTTACCCCCAGCTCACAACACCAATCCCTG  149

seq1  TTCCAGGGGATCCTAAGCCATCCTTGGATCTCCATAGTATCCAAGCACAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGGATCCTAAGCCATCCTTGGATCTCCATAGTATCCAAGCACAC  199

seq1  AGTTGGAGAACAAACATACATGTAGGCAAAACACCCATTTACACACAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGAACAAACATACATGTAGGCAAAACACCCATTTACACACAAAA  249

seq1  ATAAAATTAAATTAAAATTAAAGAATAAGAAATAATAAAGTGAGCTGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAAATTAAAATTAAAGAATAAGAAATAATAAAGTGAGCTGGGC  299

seq1  ATGGTAGCACATGCCTTTCATGCCAGCACTTGGGAGGCAGAGGCAGGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCACATGCCTTTCATGCCAGCACTTGGGAGGCAGAGGCAGGAGG  349

seq1  ATTTCTAAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  399

seq1  CAGGGCTATACAGAGAAACCCTGTCTCGAAAATCCAAATAAAATAAAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTATACAGAGAAACCCTGTCTCGAAAATCCAAATAAAATAAAATA  449

seq1  AAATACAATAAAATACAATAAAATAAAGATTTCTATGGATCCACACATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATAAAATACAATAAAATAAAGATTTCTATGGATCCACACATTT  499

seq1  CTTTGCTTCCTGCTGCCTCCTCACCCCCCTGTTTCTGCT  538
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCCTGCTGCCTCCTCACCCCCCTGTTTCTGCT  538