BAC Information

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BAC

Clone NameB6Ng01-039J03
Chromosome6 (Build37)
Map Location 9,160,743 - 9,331,932
singlet/doubletdoublet
Overlap geneNxph1
Upstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039J03.bB6Ng01-039J03.g
ACCDH866806DH866807
length7611,099
definitionDH866806|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J03, 5' end.DH866807|Mus musculus domesticus DNA, BAC clone: B6Ng01-039J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,160,743 - 9,161,503)(9,330,823 - 9,331,932)
sequence
gaattcctctcctttactaagcatgatgttaatatcctgcaaaccacaga
accaaatgtatacattacagcatttgaacaaatccctttattcatcgggc
cctgtttcttctttagcttcagcctcctgtctgtgcctgtcgcctctgct
tccactccttgcatcttaaattctctggacacagtgctaccgattgttct
ctaatatcttgctgcctctcatgagtctgtattagccatgcagctgtctc
atcttcacggccctttcattactttctaaatagcaagcttgattttggat
tgttaggctcatcttaaaggttatgtttgagaatcatttcttagaacttg
gaggtaggaataattccttgcccactgcattttatgcactcgttccagtt
gttatcatctatgtagatattagatccattcctcattttcatggtatctg
aatgtagaatttgttacagattagatagtaagtatttgttgactaaacaa
gtactcatttgctttgaaaaataacctttagtttaattcactagagctaa
agttctgaaaataaagatgaggtctgtaatccttcccaatttagaatgaa
ccagactctgagagctaagcacagtagtctctctctctctctctctctct
ctctctctctctctctctctcttgcctgtttgtaagttcatcaaaggaaa
gtttattatctaaaagatacaagttaatctttttactagttccttaacaa
aattactcaaa

gaattcaaggccaacctatgatacaagtgagtcatggcgggcagagggag
caaggcagagagacagagacacagagagacacagacaaaagacagagtgt
cgtcatcaccatttgcacagccccaacttccaggatgccaagatcacact
agcccatgcacttttcccaggacccttactcatgcttgcaccatgccatg
ttgtccatgtcctgaagctaaggtcagtcttgcaccgattagttataaat
cttctcttttgagaaacatttttaaaaattcagtcttcatagttaagtga
aaacgttggtgaattttaaataattttcctacaattcacttgtgtggtaa
tgttcattcacttaggacaacactagtgtaataacatctctgtgctgatt
gataaaaatggtatgggaaatgatgaaggctaaaacaattaacctcttat
ttttagcaacttataagcttatgagagaaaatatttaaatcaaataatgt
aactatatattctatattgtcttatataacaaatccattattttttatta
aaaataaatataataaaagcactagctttagaatattaataaactatttg
tgtattgatgagtaatcaaaataaaaattatccatcttatgaaatattaa
atcacatagaaatacaaatatttgtgctatgttcttaaccagcacccaaa
taacaggtttttgggttcttttttttttttttagatcatttctttattta
catttcaaatgttattcccttttcctggtttcccctctgaaaacccctat
tactcccccaccccatgctcaccaacctacccactcctacttcctggccc
tggcattcccctatactggggcatagagctttcacagaatctaggacctc
tcctcccattgatgactgactaggccatcctctgctgcatatgcagctga
agtcgtgagtcccacatgtggtttctgttgttggtggtttagtccctggg
agatctggggtactggataatcatttggtgttcatctatagggctgcaac
acctttagctccatgggtactcctcggggatctgacattacatcaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9160743_9161503
seq2: B6Ng01-039J03.b_42_802

seq1  GAATTCCTCTCCTTTACTAAGCATGATGTTAATATCCTGCAAACCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCCTTTACTAAGCATGATGTTAATATCCTGCAAACCACAGA  50

seq1  ACCAAATGTATACATTACAGCATTTGAACAAATCCCTTTATTCATCGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGTATACATTACAGCATTTGAACAAATCCCTTTATTCATCGGGC  100

seq1  CCTGTTTCTTCTTTAGCTTCAGCCTCCTGTCTGTGCCTGTCGCCTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTTCTTTAGCTTCAGCCTCCTGTCTGTGCCTGTCGCCTCTGCT  150

seq1  TCCACTCCTTGCATCTTAAATTCTCTGGACACAGTGCTACCGATTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCTTGCATCTTAAATTCTCTGGACACAGTGCTACCGATTGTTCT  200

seq1  CTAATATCTTGCTGCCTCTCATGAGTCTGTATTAGCCATGCAGCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCTTGCTGCCTCTCATGAGTCTGTATTAGCCATGCAGCTGTCTC  250

seq1  ATCTTCACGGCCCTTTCATTACTTTCTAAATAGCAAGCTTGATTTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACGGCCCTTTCATTACTTTCTAAATAGCAAGCTTGATTTTGGAT  300

seq1  TGTTAGGCTCATCTTAAAGGTTATGTTTGAGAATCATTTCTTAGAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGCTCATCTTAAAGGTTATGTTTGAGAATCATTTCTTAGAACTTG  350

seq1  GAGGTAGGAATAATTCCTTGCCCACTGCATTTTATGCACTCGTTCCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGAATAATTCCTTGCCCACTGCATTTTATGCACTCGTTCCAGTT  400

seq1  GTTATCATCTATGTAGATATTAGATCCATTCCTCATTTTCATGGTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATCTATGTAGATATTAGATCCATTCCTCATTTTCATGGTATCTG  450

seq1  AATGTAGAATTTGTTACAGATTAGATAGTAAGTATTTGTTGACTAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAATTTGTTACAGATTAGATAGTAAGTATTTGTTGACTAAACAA  500

seq1  GTACTCATTTGCTTTGAAAAATAACCTTTAGTTTAATTCACTAGAGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATTTGCTTTGAAAAATAACCTTTAGTTTAATTCACTAGAGCTAA  550

seq1  AGTTCTGAAAATAAAGATGAGGTCTGTAATCCTTCCCAATTTAGAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAAAATAAAGATGAGGTCTGTAATCCTTCCCAATTTAGAATGAA  600

seq1  CCAGACTCTGAGAGCTAAGCACAGTAGTCTCTCTCTCTCTCTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCTGAGAGCTAAGCACAGTAGTCTCTCTCTCTCTCTCTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCTCTCTTGCTTGTTTGGAAGTTCTTAAAAGGAAA  700
      ||||||||||||||||||||||||| |||||| |||||| | ||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTTGCCTGTTTGTAAGTTCATCAAAGGAAA  700

seq1  GTTTATTATCTAAAAGATACAAGTTAATCTTTTAACTATTTCCTTTTCAA  750
      ||||||||||||||||||||||||||||||||| |||| ||||||  |||
seq2  GTTTATTATCTAAAAGATACAAGTTAATCTTTTTACTAGTTCCTTAACAA  750

seq1  AAGTACTCAAA  761
      || ||||||||
seq2  AATTACTCAAA  761


seq1: chr6_9330823_9331932
seq2: B6Ng01-039J03.g_69_1167 (reverse)

seq1  TTGGTGATTGTATATGTCATGGATCCCCAGAGAAAGTACCCATGGAGCTA  50
      ||||||| |||| ||||||  ||||||| |||  ||||||||||||||||
seq2  TTGGTGA-TGTA-ATGTCA--GATCCCC-GAG-GAGTACCCATGGAGCTA  44

seq1  AAGGTGTTTGCAGCCCTATAGGATGAACAACAATATGAATTATCCAGTAC  100
      |||||| ||||||||||||| |||||||| ||| ||| ||||||||||| 
seq2  AAGGTG-TTGCAGCCCTATA-GATGAACACCAA-ATG-ATTATCCAGTA-  89

seq1  CCCCAGATCTCCCAGGGACTAAACCACCAACCACAGAAACCACATGGTGG  150
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CCCCAGATCTCCCAGGGACTAAACCACCAACAACAGAAACCACAT-GTGG  138

seq1  GACTCACGACTTCAGCTGCATATGCAGCAGAGGATGGCCTAGTCAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACGACTTCAGCTGCATATGCAGCAGAGGATGGCCTAGTCAGTCAT  188

seq1  CAATGGGAGGAGAGGTCCTAGATTCTGTGAAAGCTCTATGCCCCAGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAGGAGAGGTCCTAGATTCTGTGAAAGCTCTATGCCCCAGTATA  238

seq1  GGGGAATGCCAGGGCCAGGAAGTAGGAGTGGGTAGGTTGGTGAGCATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGCCAGGGCCAGGAAGTAGGAGTGGGTAGGTTGGTGAGCATGGG  288

seq1  GTGGGGGAGTAATAGGGGTTTTCAGAGGGGAAACCAGG-AAAGGGAATAA  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGGGGGAGTAATAGGGGTTTTCAGAGGGGAAACCAGGAAAAGGGAATAA  338

seq1  CATTTGAAATGTAAATAAAGAAATGATCTAAAAAAAAAAAAAAGAACCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAATGTAAATAAAGAAATGATCTAAAAAAAAAAAAAAGAACCCA  388

seq1  AAAACCTGTTATTTGGGTGCTGGTTAAGAACATAGCACAAATATTTGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTTATTTGGGTGCTGGTTAAGAACATAGCACAAATATTTGTAT  438

seq1  TTCTATGTGATTTAATATTTCATAAGATGGATAATTTTTATTTTGATTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGATTTAATATTTCATAAGATGGATAATTTTTATTTTGATTAC  488

seq1  TCATCAATACACAAATAGTTTATTAATATTCTAAAGCTAGTGCTTTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATACACAAATAGTTTATTAATATTCTAAAGCTAGTGCTTTTATT  538

seq1  ATATTTATTTTTAATAAAAAATAATGGATTTGTTATATAAGACAATATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTTTAATAAAAAATAATGGATTTGTTATATAAGACAATATAG  588

seq1  AATATATAGTTACATTATTTGATTTAAATATTTTCTCTCATAAGCTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGTTACATTATTTGATTTAAATATTTTCTCTCATAAGCTTATA  638

seq1  AGTTGCTAAAAATAAGAGGTTAATTGTTTTAGCCTTCATCATTTCCCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTAAAAATAAGAGGTTAATTGTTTTAGCCTTCATCATTTCCCATA  688

seq1  CCATTTTTATCAATCAGCACAGAGATGTTATTACACTAGTGTTGTCCTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTATCAATCAGCACAGAGATGTTATTACACTAGTGTTGTCCTAA  738

seq1  GTGAATGAACATTACCACACAAGTGAATTGTAGGAAAATTATTTAAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAACATTACCACACAAGTGAATTGTAGGAAAATTATTTAAAATT  788

seq1  CACCAACGTTTTCACTTAACTATGAAGACTGAATTTTTAAAAATGTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACGTTTTCACTTAACTATGAAGACTGAATTTTTAAAAATGTTTCT  838

seq1  CAAAAGAGAAGATTTATAACTAATCGGTGCAAGACTGACCTTAGCTTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAAGATTTATAACTAATCGGTGCAAGACTGACCTTAGCTTCAG  888

seq1  GACATGGACAACATGGCATGGTGCAAGCATGAGTAAGGGTCCTGGGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGACAACATGGCATGGTGCAAGCATGAGTAAGGGTCCTGGGAAAA  938

seq1  GTGCATGGGCTAGTGTGATCTTGGCATCCTGGAAGTTGGGGCTGTGCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGGCTAGTGTGATCTTGGCATCCTGGAAGTTGGGGCTGTGCAAA  988

seq1  TGGTGATGACGACACTCTGTCTTTTGTCTGTGTCTCTCTGTGTCTCTGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGACGACACTCTGTCTTTTGTCTGTGTCTCTCTGTGTCTCTGTC  1038

seq1  TCTCTGCCTTGCTCCCTCTGCCCGCCATGACTCACTTGTATCATAGGTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTTGCTCCCTCTGCCCGCCATGACTCACTTGTATCATAGGTTG  1088

seq1  GCCTTGAATTC  1110
      |||||||||||
seq2  GCCTTGAATTC  1099


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