BAC Information

Click to search

BAC

Clone NameB6Ng01-039N02
Chromosome6 (Build37)
Map Location 139,993,850 - 140,147,949
singlet/doubletdoublet
Overlap genenone
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N02.bB6Ng01-039N02.g
ACCDH866972DH866973
length1,06981
definitionDH866972|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N02, 5' end.DH866973|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,146,874 - 140,147,949)(139,993,850 - 139,993,927)
sequence
gaattcaccatgtagaccagactggcctcaaaatcacagagatctgcctg
tctttgccttccaggggctgagatgaaaggcctgctttgcttcgactcat
gaaatcacaggttgttattcccaaagatctaagtaacaatgtagaggaca
cttgtgcaagatggcgtcatcttggactttgagatttgcatattttattg
gattctggtttttgagaaataaattcaactcaaatcttaaatgtctttcc
tcatttgtcagatatggaggtgttgggcgggagagatgacttagtgaata
gggtgcttgctgggaaaggatcaagacttgagtttggacctcagcataca
ggtagatgtgggtgtgatgcctgctggggaggtagaagagacaggcagaa
ttccaggacttcctgattacccagtgcttcggaaatggtgagttccaggt
tcagtgagaaaccctgttgcataaaataagggctatgacttctgtaaacc
agtatcagttttaactgcactctaaataagtctcattatacccacagatc
taggtgtagctttccgctctcatcaatgaagcacttatttatttatttat
ttatttatttatttatttatttatttatttatttaataacagactaggat
cattctagaaagccacaactagtcaaaatacagggatatactgtccagtt
acagtggccatccacagtcatatatttacaacacagcccatgtatctatg
tatagctcagagaatatcactgaagagagggcagaaagagtctaagagcc
agaggaccaggatttctgctgtaagatagtgcctactgtgtgtgactggg
aagctgcactcataaaatctcaaaaactaaaacaaaccaaaaaacccaaa
caaagaaacagacaaaataaaccaacaccaaccaactaaacctcaaagca
gactgcacagtacagcatggatggggatccgacttccacccttagactag
gaagtgctccaggcatcagcggttctcagagaggaggacatctttccagg
aaaggcctcttgctagggt
tccgtgtatgtcttcaaaaatacacagttttggagcccatccagaaacat
aaattcattctcccctctcccctctcccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_140146874_140147949
seq2: B6Ng01-039N02.b_45_1113 (reverse)

seq1  ACCCTAGCAAGAGGCCTGTCCTTGGGAAAGATGTCCTTCCTCTCTGAGAA  50
      ||||||||||||||||| ||||  |||||||||||| ||||||||||| |
seq2  ACCCTAGCAAGAGGCCTTTCCT--GGAAAGATGTCC-TCCTCTCTGAG-A  46

seq1  ACCGCTGATTGCCTGGAGCACTTCCTAGTCTAAGGGTGGAAGTCGGATCC  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGA-TGCCTGGAGCACTTCCTAGTCTAAGGGTGGAAGTCGGATCC  95

seq1  CCATCCATGCTGTTACTGTGCAGGTCTTGCTTTGAGGTTTAGTTGGTTGG  150
      |||||||||||| ||||||||| ||| |||||||||||||||||||||||
seq2  CCATCCATGCTG-TACTGTGCA-GTC-TGCTTTGAGGTTTAGTTGGTTGG  142

seq1  TTGTTGGTTTTATTTTTGTCTGTTTCTTTGTTTGGGTTTTTTGGTTTGTT  200
       |||||||||   |||||||||||||||||||||||||||||||||||||
seq2  -TGTTGGTTT--ATTTTGTCTGTTTCTTTGTTTGGGTTTTTTGGTTTGTT  189

seq1  TTAGTTTTTGAGATTTTATGAGTGCAGCTTCCCAGTCACACACAGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTGAGATTTTATGAGTGCAGCTTCCCAGTCACACACAGTAGGC  239

seq1  ACTATCTTACAGCAGAAATCCTGGTCCTCTGGCTCTTAGACTCTTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTACAGCAGAAATCCTGGTCCTCTGGCTCTTAGACTCTTTCTGC  289

seq1  CCTCTCTTCAGTGATATTCTCTGAGCTATACATAGATACATGGGCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTCAGTGATATTCTCTGAGCTATACATAGATACATGGGCTGTGT  339

seq1  TGTAAATATATGACTGTGGATGGCCACTGTAACTGGACAGTATATCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATATGACTGTGGATGGCCACTGTAACTGGACAGTATATCCCTG  389

seq1  TATTTTGACTAGTTGTGGCTTTCTAGAATGATCCTAGTCTGTTAT----T  446
      |||||||||||||||||||||||||||||||||||||||||||||    |
seq2  TATTTTGACTAGTTGTGGCTTTCTAGAATGATCCTAGTCTGTTATTAAAT  439

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGTGC  489

seq1  TTCATTGATGAGAGCGGAAAGCTACACCTAGATCTGTGGGTATAATGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATGAGAGCGGAAAGCTACACCTAGATCTGTGGGTATAATGAGA  539

seq1  CTTATTTAGAGTGCAGTTAAAACTGATACTGGTTTACAGAAGTCATAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAGAGTGCAGTTAAAACTGATACTGGTTTACAGAAGTCATAGCC  589

seq1  CTTATTTTATGCAACAGGGTTTCTCACTGAACCTGGAACTCACCATTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTATGCAACAGGGTTTCTCACTGAACCTGGAACTCACCATTTCC  639

seq1  GAAGCACTGGGTAATCAGGAAGTCCTGGAATTCTGCCTGTCTCTTCTACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTGGGTAATCAGGAAGTCCTGGAATTCTGCCTGTCTCTTCTACC  689

seq1  TCCCCAGCAGGCATCACACCCACATCTACCTGTATGCTGAGGTCCAAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCAGGCATCACACCCACATCTACCTGTATGCTGAGGTCCAAACT  739

seq1  CAAGTCTTGATCCTTTCCCAGCAAGCACCCTATTCACTAAGTCATCTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTGATCCTTTCCCAGCAAGCACCCTATTCACTAAGTCATCTCTC  789

seq1  CCGCCCAACACCTCCATATCTGACAAATGAGGAAAGACATTTAAGATTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCAACACCTCCATATCTGACAAATGAGGAAAGACATTTAAGATTTG  839

seq1  AGTTGAATTTATTTCTCAAAAACCAGAATCCAATAAAATATGCAAATCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTATTTCTCAAAAACCAGAATCCAATAAAATATGCAAATCTC  889

seq1  AAAGTCCAAGATGACGCCATCTTGCACAAGTGTCCTCTACATTGTTACTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAAGATGACGCCATCTTGCACAAGTGTCCTCTACATTGTTACTT  939

seq1  AGATCTTTGGGAATAACAACCTGTGATTTCATGAGTCGAAGCAAAGCAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTGGGAATAACAACCTGTGATTTCATGAGTCGAAGCAAAGCAGG  989

seq1  CCTTTCATCTCAGCCCCTGGAAGGCAAAGACAGGCAGATCTCTGTGATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATCTCAGCCCCTGGAAGGCAAAGACAGGCAGATCTCTGTGATTT  1039

seq1  TGAGGCCAGTCTGGTCTACATGGTGAATTC  1076
      ||||||||||||||||||||||||||||||
seq2  TGAGGCCAGTCTGGTCTACATGGTGAATTC  1069

seq1: chr6_139993850_139993927
seq2: B6Ng01-039N02.g_79_156

seq1  GTGTATGTCTTCAAAAATACACAGTTTTGGAGCCCATCCAGAAACAGAAA  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTATGTCTTCAAAAATACACAGTTTTGGAGCCCATCCAGAAACATAAA  50

seq1  TTCATTCTCCCCTCTCCCCTCTCCCCTC  78
      ||||||||||||||||||||||||||||
seq2  TTCATTCTCCCCTCTCCCCTCTCCCCTC  78