BAC Information

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BAC

Clone NameB6Ng01-040E18
Chromosome6 (Build37)
Map Location 95,639,963 - 95,797,464
singlet/doubletdoublet
Overlap geneSuclg2
Upstream geneLrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik, C130034I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E18.bB6Ng01-040E18.g
ACCDH867311DH867312
length1,120990
definitionDH867311|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E18, 5' end.DH867312|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,796,322 - 95,797,464)(95,639,963 - 95,641,139)
sequence
gaattctccacgtcctcagaaataatgtatgtaatctagatcagcttaag
tgaagcaaacttactttttcttatattatgccaaattattttgtccaaaa
ttaagttttacagaaaattgaacagacaggaagtttgggggaaaaaacct
ctatttaatctctgtaaaagtttttcctgtggcacatgcctttaatccca
acactcgggaggcagaggcaggtggacttctgagttcgaggccagcatgg
tctacaaagtgagttccaggacagccagggctatacagagaaaccctgtc
tcaaaaaaccaaaaaaaaaaaaaaaaaaattcctattatttaaaacacta
tattagaatgataagttttaattaataaaccaagttgacatctcagtcca
aactaaatcccatacctcctacatatctccacaattgctacctagtatct
tttttatctgctctaggacaccttgccacattaacttgacctgtattctt
aaggtcctcctagccaaatgagtttgtctgactgaattgccagttcagaa
gcatacagtcaattaactcataagactgtcaccaactgcatttgtctgat
gtttttcttgtgagtgtaagcctgtgtcttttaaaggcaagtaacagaaa
gcaagaccaattccagaaagttaaacattgaccacaaaggcttacttgga
gagtttatggtacatagtatctatgtttaactaaggtcatttccttcagg
cttgaacagtctctaaagaacagatgtgtaagcagggaaagttggcagga
tataacacatgtcttaactaaaaacaaagacagacgtcagcagactcatt
catgattaatcacaaccaaagttaaatccagatgtgctccccacatatct
gccttttttatctataagtttatctattaagtttttatcaagtttatctt
tttatctattaagtttacagaatatgagcagacaggagtttggggggaaa
gactctatttatctttgtaatagttttctattatttaaatattattaagc
aagtatctcagctatgacgcagaaagactatgttgattaggcatccctca
aatgttgaccttaacatcat
gaattctgtcctcatgttcatcaggataatgagcactgattgtttttttt
ttgtttgtttttgtttgtttttgttttgttttgttttgtttttgtttggg
agacagaatctcattatgtagccctgcgtggcctttaattcaaagagatg
tgtctgcctctgctgctacctccagaaggctgggactaaaggtaccacca
tactcagacagttggtttttaactcctctactaaagcgctctgtcactaa
aatcaaatcccaaagtaaaagccagaagttcagaacatgcctgggttttc
taaatcaactctcttccctccctcccttctattttctagggcctttgagt
tactgttttgggtgttttgtccagaacagctcctaccagcatcgaaagcc
cagtcggtcagtgaagagaacacggccacaacagaaatggagcctggtga
tgacataccacccagagggatgagagatgttccgttctatccaggcaacc
aggaaacacaaattcatgcacactcaaaaaagagtgttttaagaattcat
caaaatgaatgagcaaagtcctcaatttaatttcctttttaagaaattct
acacaggcaggaaagactggccaacagacaagcctgaagtttgttctgag
gttcatggctcctgcagcttcagaggctcagaaacatctgtgggaataat
agaggggtcttcaaaggcagacgctctttagccaaaaggcagaaagataa
aaatgtaaagtgatgacacacaggcaacaggcatgtgacatacccaagac
aaacaacatcacaggtgatgacacacaggcaacaggcatgtgacataccc
aagacaaacaacatcacaggtgatgacacacaggcaacaggcatgtgaca
tacccaagacaaacaacattccggatcggagatggcaaacgtctgcaatt
ctcaccgaatgcgaatggtggctcacggtgctttcttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_95796322_95797464
seq2: B6Ng01-040E18.b_46_1165 (reverse)

seq1  ATGATGGGTAAGGTCAACACTTTTTGAGGGGATGCCTAAGATCAACATAG  50
      ||||| | |||||||||||   ||||| ||||||||||  ||||||||||
seq2  ATGAT-GTTAAGGTCAACA---TTTGA-GGGATGCCTA--ATCAACATAG  43

seq1  TCTTTCTGCGTCAATAGCTGAGATACCTTTGGCTTTAAATAAATATTTTA  100
      |||||||||||| |||||||||||||   | ||||  ||| |||| ||||
seq2  TCTTTCTGCGTC-ATAGCTGAGATAC---TTGCTT--AAT-AATA-TTTA  85

seq1  AATAATAGGAAAAACTATTACAAAGGTTAAATAGAGGTCTTTCCCCCCAA  150
      ||||||||  |||||||||||||| | |||||||| ||||||||||||||
seq2  AATAATAG--AAAACTATTACAAA-GATAAATAGA-GTCTTTCCCCCCAA  131

seq1  ACTTCCTGTCTGCTCAATATTCTGTAAAACTTAATAGATAAAAAAGATAA  200
      || |||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  AC-TCCTGTCTGCTC-ATATTCTGT-AAACTTAATAGAT-AAAAAGATAA  177

seq1  ACTTGATAAAAACTTAATAGATAAACTTATAGATAAAAAAGGCAGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATAAAAACTTAATAGATAAACTTATAGATAAAAAAGGCAGATATG  227

seq1  TGGGGAGCACATCTGGATTTAACTTTGGTTGTGATTAATCATGAATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCACATCTGGATTTAACTTTGGTTGTGATTAATCATGAATGAGT  277

seq1  CTGCTGACGTCTGTCTTTGTTTTTAGTTAAGACATGTGTTATATCCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACGTCTGTCTTTGTTTTTAGTTAAGACATGTGTTATATCCTGCC  327

seq1  AACTTTCCCTGCTTACACATCTGTTCTTTAGAGACTGTTCAAGCCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCCTGCTTACACATCTGTTCTTTAGAGACTGTTCAAGCCTGAAG  377

seq1  GAAATGACCTTAGTTAAACATAGATACTATGTACCATAAACTCTCCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCTTAGTTAAACATAGATACTATGTACCATAAACTCTCCAAGT  427

seq1  AAGCCTTTGTGGTCAATGTTTAACTTTCTGGAATTGGTCTTGCTTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTGTGGTCAATGTTTAACTTTCTGGAATTGGTCTTGCTTTCTGT  477

seq1  TACTTGCCTTTAAAAGACACAGGCTTACACTCACAAGAAAAACATCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTTTAAAAGACACAGGCTTACACTCACAAGAAAAACATCAGAC  527

seq1  AAATGCAGTTGGTGACAGTCTTATGAGTTAATTGACTGTATGCTTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTTGGTGACAGTCTTATGAGTTAATTGACTGTATGCTTCTGAA  577

seq1  CTGGCAATTCAGTCAGACAAACTCATTTGGCTAGGAGGACCTTAAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAATTCAGTCAGACAAACTCATTTGGCTAGGAGGACCTTAAGAATA  627

seq1  CAGGTCAAGTTAATGTGGCAAGGTGTCCTAGAGCAGATAAAAAAGATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAGTTAATGTGGCAAGGTGTCCTAGAGCAGATAAAAAAGATACT  677

seq1  AGGTAGCAATTGTGGAGATATGTAGGAGGTATGGGATTTAGTTTGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAATTGTGGAGATATGTAGGAGGTATGGGATTTAGTTTGGACTG  727

seq1  AGATGTCAACTTGGTTTATTAATTAAAACTTATCATTCTAATATAGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAACTTGGTTTATTAATTAAAACTTATCATTCTAATATAGTGTT  777

seq1  TTAAATAATAGGAATTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATAGGAATTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGG  827

seq1  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCATGCT  877

seq1  GGCCTCGAACTCAGAAGTCCACCTGCCTCTGCCTCCCGAGTGTTGGGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAGTCCACCTGCCTCTGCCTCCCGAGTGTTGGGATT  927

seq1  AAAGGCATGTGCCACAGGAAAAACTTTTACAGAGATTAAATAGAGGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGTGCCACAGGAAAAACTTTTACAGAGATTAAATAGAGGTTTT  977

seq1  TTCCCCCAAACTTCCTGTCTGTTCAATTTTCTGTAAAACTTAATTTTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAAACTTCCTGTCTGTTCAATTTTCTGTAAAACTTAATTTTGGA  1027

seq1  CAAAATAATTTGGCATAATATAAGAAAAAGTAAGTTTGCTTCACTTAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTTGGCATAATATAAGAAAAAGTAAGTTTGCTTCACTTAAGC  1077

seq1  TGATCTAGATTACATACATTATTTCTGAGGACGTGGAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGATTACATACATTATTTCTGAGGACGTGGAGAATTC  1120

seq1: chr6_95639963_95641139
seq2: B6Ng01-040E18.g_69_1058

seq1  GAATTCTGTCCTCATGTTCATCAGGATAATGAGCACTGATTGTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTCATGTTCATCAGGATAATGAGCACTGATTGTTTTTTTT  50

seq1  TTGTTTGTTTTTGTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTGTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTGGG  100

seq1  AGACAGAATCTCATTATGTAGCCCTGCGTGGCCTTTAATTCAAAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATCTCATTATGTAGCCCTGCGTGGCCTTTAATTCAAAGAGATG  150

seq1  TGTCTGCCTCTGCTGCTACCTCCAGAAGGCTGGGACTAAAGGTACCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTCTGCTGCTACCTCCAGAAGGCTGGGACTAAAGGTACCACCA  200

seq1  TACTCAGACAGTTGGTTTTTAACTCCTCTACTAAAGCGCTCTGTCACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGACAGTTGGTTTTTAACTCCTCTACTAAAGCGCTCTGTCACTAA  250

seq1  AATCAAATCCCAAAGTAAAAGCCAGAAGTTCAGAACATGCCTGGGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCCCAAAGTAAAAGCCAGAAGTTCAGAACATGCCTGGGTTTTC  300

seq1  TAAATCAACTCTCTTCCCTCCCTCCCTTCTATTTTCTAGGGCCTTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAACTCTCTTCCCTCCCTCCCTTCTATTTTCTAGGGCCTTTGAGT  350

seq1  TACTGTTTTGGGTGTTTTGTCCAGAACAGCTCCTACCAGCATCGAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTGGGTGTTTTGTCCAGAACAGCTCCTACCAGCATCGAAAGCC  400

seq1  CAGTCGGTCAGTGAAGAGAACACGGCCACAACAGAAATGGAGCCTGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGTCAGTGAAGAGAACACGGCCACAACAGAAATGGAGCCTGGTGA  450

seq1  TGACATACCACCCAGAGGGATGAGAGATGTTCCGTTCTATCCAGGCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACCACCCAGAGGGATGAGAGATGTTCCGTTCTATCCAGGCAACC  500

seq1  AGGAAACACAAATTCATGCACACTCAAAAAAGAGTGTTTTAAGAATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACAAATTCATGCACACTCAAAAAAGAGTGTTTTAAGAATTCAT  550

seq1  CAAAATGAATGAGCAAAGTCCTCAATTTAATTTCCTTTTTAAGAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAATGAGCAAAGTCCTCAATTTAATTTCCTTTTTAAGAAATTCT  600

seq1  ACACAGGCAGGAAAGACTGGCCAACAGACAAGCCTGAAGTTTGTTCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCAGGAAAGACTGGCCAACAGACAAGCCTGAAGTTTGTTCTGAG  650

seq1  GTTCATGGCTCCTGCAGCTTCAGAGGCTCAGAAACATCTGTGGGAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGCTCCTGCAGCTTCAGAGGCTCAGAAACATCTGTGGGAATAAT  700

seq1  AGAGGGGTCTTCAAAGGCAGACGCTCTTTAGCC-AAAGGCAGAAAGATAA  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGGGGTCTTCAAAGGCAGACGCTCTTTAGCCAAAAGGCAGAAAGATAA  750

seq1  AAATGTAAAGTGATGACACACAGGCAACAGGCATGTGACATACCCAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAGTGATGACACACAGGCAACAGGCATGTGACATACCCAAGAC  800

seq1  AAACAACATCACAGGTGATGACACACAGGCAACAGGCATGTGACATACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACATCACAGGTGATGACACACAGGCAACAGGCATGTGACATACCC  850

seq1  AAGACAAACAACATCACAGGTGATGACACACAGGCAACAGGCATGTGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACAACATCACAGGTGATGACACACAGGCAACAGGCATGTGACA  900

seq1  TACCCAAGACAAACAACA-TCCGGATCGGAGATGGCAAACGTCTGCCAAT  948
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TACCCAAGACAAACAACATTCCGGATCGGAGATGGCAAACGTCTG-CAAT  949

seq1  TCTCACCGAATGCGAATGGTGGCTCACGGTGC-TTCATCAAGTAAGACCA  997
      |||||||||||||||||||||||||||||||| ||| ||||         
seq2  TCTCACCGAATGCGAATGGTGGCTCACGGTGCTTTCTTCAA---------  990

seq1  TGAGGCTCTGTCTAGACCCATCAGAATAAACTCATGATTGATTACTGATG  1047
                                                        
seq2  --------------------------------------------------  990

seq1  TTTGCCACAGGAAGACATAAAATCGTAAATATTCACATGCTAGAAGCAAA  1097
                                                        
seq2  --------------------------------------------------  990

seq1  ATAAAGTTATGTGACTTGGGAGAATGAGACGAGACAGGCTCGTCAACATC  1147
                                                        
seq2  --------------------------------------------------  990

seq1  ATCATTATTAATATTACTGAGTATCTTCAA  1177
                                    
seq2  ------------------------------  990