BAC Information

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BAC

Clone NameB6Ng01-040F10
Chromosome6 (Build37)
Map Location 11,482,746 - 11,613,716
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F10.bB6Ng01-040F10.g
ACCDH867339DH867340
length1,1251,056
definitionDH867339|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F10, 5' end.DH867340|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,482,746 - 11,483,885)(11,612,908 - 11,613,716)
sequence
gaattcttttcttgatccttcttctgtaccacatcttggatatattgata
gaaaagtcatgcaacaggccattggtccctgtttctccatagtgtgatga
tataactatgtattgtccactcttagacctccccatgtgttaagatttca
aataaggcctccaaacaaaagttagcctacaccctagtgttcagaatcag
atacgcttctggaatagctaagctcaatgaacacgagagatcatcttaat
ctcaccaccatggatttttccagactctgcctttaaacaatgtgtcattc
ctgtatccttacttcaatttcaagttctgtgtcaattaatatcaagcctt
tctggtgtcctcaaagggagcattctgtttagcatcagtattggaagcaa
ttcttctttatttgttttccaaccatttcacaaattgttgaactagaacc
aggatcaaaactcggttgtcctaaataagactgtacttgccttcaagaaa
cccctgactctcttgcccacttctactatgatgtcaaaaaaaaatcctcc
catgaactctcacacatatgcagtacctcaggaagaatagaaaggtgcta
ttctttctgggaattctcaagagtgcagttgatgtcatttagaagctatc
tatatggtaagtggaatacactaaaatctgtagatctcactgatggatgt
tgcagtgttgattctctcttgcatatgtaatagagctggaatgaatttat
ttccaacaaagacagtgtcagtatgataattttcccacaggaagaaataa
tcaaggaaaggcaatctgtttgtaaagtgtactggatgtcttctgttaat
tagataatactcttctgcagaaccactaaaggttttcttgtggtagctgg
tagaaagggttagacatgtctagaaaaggaagccagtgtggggaatagag
aaggaagaaaggattccatttaatgagagaaggtggagtgaatcagaatg
agtgtgaaagaggaaatggactgacatcttactaaaatgagacaggttgt
ttctttgctgttcagaatggaaagaatttttataatcatatgaaaatgga
gagacttctccttgctctaagaagg
gaattctctgttaagctctgtactcaagttttaattgggtaaattgctgt
tttttgagtctaacttcttgggttctttgtgtattttggatattagtcat
ctaacagatgtaatattcgtgaagatctttaccaaatctgtaggttgctg
atttgtcatattgagggtgttgtttgctttacagaagcttttcaggttca
tgaggtcccatttgacaactgttgatcttaaagcctgagccgttggcatt
ttagaatagtcaaaagaattcttaaccataaaagaacttctgcgagaatc
accattgctgacctaaagctgtactgcagaggaatagtgaaaaacaaatc
aaaacagaacaaaacaagcaaacaaacgaacaaacaaaaaaacgcatggt
attggtacagagacagagaggtccatcaatggaatagaattgaagaccca
gaaacgtatccacacccctatggacacttgatttttgacaagccaaaaaa
atgtagtggaaaaaagaaagcatcttcaacaaatggtgctaatctaactg
gaggtctgtgtgtagaagaatgcaaattggtccagatatatgtcctgtac
aaggctcaaatccaggtgaatcaaagacatctacataaaaccacatatac
tgaaacttatagaagaggaagtgggaagtagcctcaaaaagttttgttga
ttgcatctttctgaagatttgttttattttcttcatttttcatgttttgc
tttgttttaagaaatattgtcatgtacacatcacatagctctgcttggtt
ttaatagtactgggattacagacatgtgccactgtattcagttcatgtgt
gctgaggaacaaacacaggtccctgtttcatgttatacaagcattctaaa
agctgagcaatacactaaatattctccagatggaggttttaaatataatt
attttcatatctcttcagcttgttgataccttgagacctctcttgtctat
gcaataaagattgtccttttaactttattttacatgtctgtattttgtac
ttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11482746_11483885
seq2: B6Ng01-040F10.b_44_1168

seq1  GAATTCTTTTCTTGATCCTTCTTCTGTACCACATCTTGGATATATTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTGATCCTTCTTCTGTACCACATCTTGGATATATTGATA  50

seq1  GAAAAGTCATGCAACAGGCCATTGGTCCCTGTTTCTCCATAGTGTGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCATGCAACAGGCCATTGGTCCCTGTTTCTCCATAGTGTGATGA  100

seq1  TATAACTATGTATTGTCCACTCTTAGACCTCCCCATGTGTTAAGATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTATGTATTGTCCACTCTTAGACCTCCCCATGTGTTAAGATTTCA  150

seq1  AATAAGGCCTCCAAACAAAAGTTAGCCTACACCCTAGTGTTCAGAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCCTCCAAACAAAAGTTAGCCTACACCCTAGTGTTCAGAATCAG  200

seq1  ATACGCTTCTGGAATAGCTAAGCTCAATGAACACGAGAGATCATCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCTTCTGGAATAGCTAAGCTCAATGAACACGAGAGATCATCTTAAT  250

seq1  CTCACCACCATGGATTTTTCCAGACTCTGCCTTTAAACAATGTGTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACCATGGATTTTTCCAGACTCTGCCTTTAAACAATGTGTCATTC  300

seq1  CTGTATCCTTACTTCAATTTCAAGTTCTGTGTCAATTAATATCAAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCTTACTTCAATTTCAAGTTCTGTGTCAATTAATATCAAGCCTT  350

seq1  TCTGGTGTCCTCAAAGGGAGCATTCTGTTTAGCATCAGTATTGGAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTCCTCAAAGGGAGCATTCTGTTTAGCATCAGTATTGGAAGCAA  400

seq1  TTCTTCTTTATTTGTTTTCCAACCATTTCACAAATTGTTGAACTAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTATTTGTTTTCCAACCATTTCACAAATTGTTGAACTAGAACC  450

seq1  AGGATCAAAACTCGGTTGTCCTAAATAAGACTGTACTTGCCTTCAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAACTCGGTTGTCCTAAATAAGACTGTACTTGCCTTCAAGAAA  500

seq1  CCCCTGACTCTCTTGCCCACTTCTACTATGATGTCAAAAAAAAATCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACTCTCTTGCCCACTTCTACTATGATGTCAAAAAAAAATCCTCC  550

seq1  CATGAACTCTCACACATATGCAGTACCTCAGGAAGAATAGAAAGGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTCTCACACATATGCAGTACCTCAGGAAGAATAGAAAGGTGCTA  600

seq1  TTCTTTCTGGGAATTCTCAAGAGTGCAGTTGATGTCATTTAGAAGCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGGGAATTCTCAAGAGTGCAGTTGATGTCATTTAGAAGCTATC  650

seq1  TATATGGTAAGTGGAATACACTAAAATCTGTAGATCTCACTGATGGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTAAGTGGAATACACTAAAATCTGTAGATCTCACTGATGGATGT  700

seq1  TGCAGTGTTGATTCTCTCTTGCATATGTAATAGAGCTGGAATGAATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTGATTCTCTCTTGCATATGTAATAGAGCTGGAATGAATTTAT  750

seq1  TTCCAACAAAGACAGTGTCAGTATGATAATTTTCCCACAGGAAGAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAAAGACAGTGTCAGTATGATAATTTTCCCACAGGAAGAAATAA  800

seq1  TCAAGGAAAGGCAATCTG-TTGTAAAGTGTACTGGATGTCTTCTG-TAAT  848
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TCAAGGAAAGGCAATCTGTTTGTAAAGTGTACTGGATGTCTTCTGTTAAT  850

seq1  TAGATAATACTCTTCTGCAGAACCACT-AAGGGTTTCTTGTGGTAGCTGG  897
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TAGATAATACTCTTCTGCAGAACCACTAAAGGTTTTCTTGTGGTAGCTGG  900

seq1  TAGAAAGGGGTAGACATGTCTAG-AAAGGAGGCCAGTGTGGGGAAATAGA  946
      ||||||||| ||||||||||||| |||||| |||||||||||| ||||||
seq2  TAGAAAGGGTTAGACATGTCTAGAAAAGGAAGCCAGTGTGGGG-AATAGA  949

seq1  GAAGGAAGAAAGGATTCCATTTGAGTGAGAGAAGGTGGAGTGATATCAGA  996
      |||||||||||||||||||||| | |||||||||||||||||| ||||||
seq2  GAAGGAAGAAAGGATTCCATTT-AATGAGAGAAGGTGGAGTGA-ATCAGA  997

seq1  ATGAGTGTGCAGAGGAGGAAGATGGACAGGACATCGTCACTAAAATGAGG  1046
      |||||||||   | |||||| ||||||  |||||| | |||||||||| |
seq2  ATGAGTGTG--AAAGAGGAA-ATGGAC-TGACATC-TTACTAAAATGA-G  1041

seq1  ACAGGTTTGTATTCTTTTGCCTGGTTCCAGAAATGGAAAGAATTTTTAGT  1096
      ||||| |||| ||||||   |||  | ||| ||||||||||||||||| |
seq2  ACAGG-TTGT-TTCTTT--GCTG--TTCAG-AATGGAAAGAATTTTTA-T  1083

seq1  AATCAAAATGAAGATGGGATGTACTTCTCC-TGCTATAAAGAAGG  1140
      |||| | ||||| || |||   |||||||| |||| | |||||||
seq2  AATC-ATATGAAAAT-GGAGAGACTTCTCCTTGCTCT-AAGAAGG  1125

seq1: chr6_11612908_11613716
seq2: B6Ng01-040F10.g_321_1125 (reverse)

seq1  TATGAAGTACAAAATACAGACATGTAAAATAAAATTTAAAAGGACAATTC  50
      |||||||||||||||||||||||||||||| ||| |||||||||||| ||
seq2  TATGAAGTACAAAATACAGACATGTAAAAT-AAAGTTAAAAGGACAA-TC  48

seq1  TTTATTGCATATGACAAGAGAGGTCTCAAGGTATCAACAAAGCTGAAGAG  100
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TTTATTGCATA-GACAAGAGAGGTCTCAAGGTATCAAC-AAGCTGAAGAG  96

seq1  ATATGAAAATAATTATATTTTAAAACCTCCATCTGGAGAATATTTTAGTG  150
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  ATATGAAAATAATTATA-TTTAAAACCTCCATCTGGAGAATA-TTTAGTG  144

seq1  TATTGCTCAGC-TTTAGAATGCTTGTATAACATG-AACAGGGACCTGTGT  198
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TATTGCTCAGCTTTTAGAATGCTTGTATAACATGAAACAGGGACCTGTGT  194

seq1  TTGTTCCTCAGCACACATGAACTGAATACAGTGGCACATGTCTGTAATCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTCAGCACACATGAACTGAATACAGTGGCACATGTCTGTAATCC  244

seq1  CAGTACTATTAAAACCAAGCAGAGCTATGTGATGTGTACATGACAATATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTATTAAAACCAAGCAGAGCTATGTGATGTGTACATGACAATATT  294

seq1  TCTTAAAACAAAGCAAAACATGAAAAATGAAGAAAATAAAACAAATCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACAAAGCAAAACATGAAAAATGAAGAAAATAAAACAAATCTTC  344

seq1  AGAAAGATGCAATCAACAAAACTTTTTGAGGCTACTTCCCACTTCCTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGCAATCAACAAAACTTTTTGAGGCTACTTCCCACTTCCTCTT  394

seq1  CTATAAGTTTCAGTATATGTGGTTTTATGTAGATGTCTTTGATTCACCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGTTTCAGTATATGTGGTTTTATGTAGATGTCTTTGATTCACCTG  444

seq1  GATTTGAGCCTTGTACAGGACATATATCTGGACCAATTTGCATTCTTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGCCTTGTACAGGACATATATCTGGACCAATTTGCATTCTTCTA  494

seq1  CACACAGACCTCCAGTTAGATTAGCACCATTTGTTGAAGATGCTTTCTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACCTCCAGTTAGATTAGCACCATTTGTTGAAGATGCTTTCTTT  544

seq1  TTTCCACTACATTTTTTTGGCTTGTCAAAAATCAAGTGTCCATAGGGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTACATTTTTTTGGCTTGTCAAAAATCAAGTGTCCATAGGGGTG  594

seq1  TGGATACGTTTCTGGGTCTTCAATTCTATTCCATTGATGGACCTCTCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACGTTTCTGGGTCTTCAATTCTATTCCATTGATGGACCTCTCTGT  644

seq1  CTCTGTACCAATACCATGCGTTTTTTTGTTTGTTCGTTTGTTTGCTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACCAATACCATGCGTTTTTTTGTTTGTTCGTTTGTTTGCTTGTT  694

seq1  TTGTTCTGTTTTGATTTGTTTTTCACTATTCCTCTGCAGTACAGCTTTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTTTTGATTTGTTTTTCACTATTCCTCTGCAGTACAGCTTTAG  744

seq1  GTCAGCAATGGTGATTCTCGCAGAAGTTCTTTTATGGTTAAGAATTCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAATGGTGATTCTCGCAGAAGTTCTTTTATGGTTAAGAATTCTTT  794

seq1  TGACTATTCTA  809
      |||||||||||
seq2  TGACTATTCTA  805