BAC Information

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BAC

Clone NameB6Ng01-040K17
Chromosome6 (Build37)
Map Location 26,119,867 - 26,121,091
singlet/doubletsinglet
Overlap geneLOC100041210
Upstream geneGpr37, Pot1a, EG626912
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040K17.bB6Ng01-040K17.g
ACCDH867559DH867560
length1,0491,195
definitionDH867559|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K17, 5' end.DH867560|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagcccaccttcttgagttcattatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttccaattctgttggtggtct
ttttgtcttgttgacgaagtcttttgccttgcagaagctttgcaaattta
tgaggtcccatttatcaattctcgattttactgcacaagccattgcagtt
ctattcaggaacttttcccctgtacccatatcttcaatgcttttccctac
tttctactctataagtttcagtgtctctggttttatgtggagttcttaat
ccacttagatttgaccttagtacaaggagataggcatggatcaatttgca
ctcttctacatgataaccaccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttctactggatgtttttagctcccttgttgaagatcaaatg
accataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcgctataccagtaccatgaagtttttatcacaattact
ctgtagtacagctttaggtcaggcaaggtgattccaccagaggttctttt
atccttgagaagagtttttgctatccgaggttttttgttattccagatga
atttgcagattgccctttctaattcgttgaagaattgagttggaattttg
atggggattgtattgaatctgtagatttgcttttggcaagatagccattt
aacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttcttcatttctttctttagagatttgaagttcgtatcataca
gatctttcacttccttagttagagtcacgcaaggtattttatattatttg
tgactattgagacgggtgttgtttcctaatttcttctcagcctgttaacc
ctgtgtacgaaaggcatttgatttgtttgagttattattgtactgctct

gaattcttaagaaagacaacatgaccaggaccatggaaatacacaaacgt
cagcagggagtagaagatgaaccaaggacacatatagtcaggaccagcag
gcaaaagttttctattttgtatttaggtgtcctgtttgagatgcatgtac
atgcattttagttgtcatatatgaaaacatctaatactattgtttccatt
atcataatcattattatcttggcatcattcaaatttgacagttgaagaag
tcgatatgctaataaactgacattcaacaaggcaaaatgctacaaaggaa
tttaaaaccaggaagtttagttccatgttctcctaattagccacacgcta
cactgcattcaaatgaataaatgtgcactgtggtcttttaaagtcctgta
gtatagtgtttttaaggagagaaaccaagtagcctttgggttatagaaat
ggtgagcctcgagagaaaggagaaaaggaaatcacagatgctcaggtgac
cctcatggcccagttatcattcagagtttgagggttagctttatgcagta
ttgtacccacactttataaaaaaaaatcttcccaagatactgggctgtga
cacttgtttcaggtgtcttaagatataaatcacatggcttaatctttgat
ttgaacaaaatctacatcccacagaaatttgatttgatgtattttagttc
actataagttacctgtaaataatagtagactgctttatcttgagaacttg
acttctcaattcttggaaactttttctcaccacaataattacatattatt
tgttagttgtcctatacttaggactcaatgtacttatctgtaagatatca
aaaaattataatctcattctctaaatgaagattgaagtattaaagagcat
atttcaaattcaaaattcaacctggcaactgttaattactcattgtacaa
taattttctattctatgatatgacaagcatcttaaagaaagatggaatta
aacatctttttacattactggtgaggggccgttttttttcatattgagtg
ggaagggggagtaacgaggaaaaagtccaatacaccactggagggcagtg
agttagctgaaaccctgtacacatgattgtgacggagacgaggtaagagg
acttaaccgaattataatggtaagcttctcaactcctacctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26119867_26121091
seq2: B6Ng01-040K17.g_70_1264 (reverse)

seq1  TCAGAGGTAGGAGTTAGGAAGGCTTTACCATTTGATCATCTGGTTTCAGT  50
      |||||||||||||||  ||||   ||||||||  || ||  ||||  |  
seq2  TCAGAGGTAGGAGTTGAGAAG--CTTACCATT--ATAATTCGGTT--AAG  44

seq1  TCCTGTCTTACCTCTGTTCCCTGGCTACATACTTAATGTAACCAGGTGCT  100
      |||  |||||||||   ||| |  | |      | ||||   |||| | |
seq2  TCC--TCTTACCTCGTCTCCGTCACAA------TCATGTGTACAGG-GTT  85

seq1  TCATGCTTAACTCACTTGCCCCTCACGTGGTTGTTATTGTGACTTTTCCT  150
      ||| || |||||||||   |||||  |||||   ||||| ||||||| | 
seq2  TCA-GC-TAACTCACT--GCCCTCCAGTGGT--GTATTG-GACTTTTTCC  128

seq1  ACTGTTACTTCCCACTTCCCACTCCAATATGAAAAAATACGGCCCATCA-  199
       | ||||| |||| ||||||||| ||||||||||||| ||||||| ||| 
seq2  TC-GTTAC-TCCCCCTTCCCACT-CAATATGAAAAAAAACGGCCCCTCAC  175

seq1  CAGTAATTGTGAAAAAGATGTATAATTCCATCTTTCCTTAAGATGCTTGT  249
      |||||| ||| |||||||||| |||||||||||||| |||||||||||||
seq2  CAGTAA-TGT-AAAAAGATGTTTAATTCCATCTTTCTTTAAGATGCTTGT  223

seq1  CATATCATAGGAATAAGAAAATTAATTGTACAATGAGTAATTAACAGGTG  299
      ||||||||| |||| |||||||| ||||||||||||||||||||||| ||
seq2  CATATCATA-GAAT-AGAAAATT-ATTGTACAATGAGTAATTAACAGTTG  270

seq1  CCAGGTTTGAATTTTTGAATTTGAAATATGCTCTTTAATACTTCAATCTT  349
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGG-TTGAA-TTTTGAATTTGAAATATGCTCTTTAATACTTCAATCTT  318

seq1  CATTTAGAGAATGAGATTATAATTTTTTGATATCTTACAGATAAGTACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAGAATGAGATTATAATTTTTTGATATCTTACAGATAAGTACAT  368

seq1  TGAGTCCTAAGTATAGGACAACTAACAAATAATATGTAATTATTGTGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTAAGTATAGGACAACTAACAAATAATATGTAATTATTGTGGTG  418

seq1  AGAAAAAGTTTCCAAGAATTGAGAAGTCAAGTTCTCAAGATAAAGCAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGTTTCCAAGAATTGAGAAGTCAAGTTCTCAAGATAAAGCAGTC  468

seq1  TACTATTA-TTACAGGTAACTTATAGTGAACTAAAATACATCAAATCAAA  548
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATTTACAGGTAACTTATAGTGAACTAAAATACATCAAATCAAA  518

seq1  TTTCTGTGGGATGTAGATTTTGTTCAAATCAAAGATTAAGCCATGTGATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGGATGTAGATTTTGTTCAAATCAAAGATTAAGCCATGTGATT  568

seq1  TATATCTTAAGACACCTGAAACAAGTGTCACAGCCCAGTATCTTGGGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTAAGACACCTGAAACAAGTGTCACAGCCCAGTATCTTGGGAAG  618

seq1  ATTTTTTTTTATAAAGTGTGGGTACAATACTGCATAAAGCTAACCCTCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTATAAAGTGTGGGTACAATACTGCATAAAGCTAACCCTCAA  668

seq1  ACTCTGAATGATAACTGGGCCATGAGGGTCACCTGAGCATCTGTGATTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAATGATAACTGGGCCATGAGGGTCACCTGAGCATCTGTGATTTC  718

seq1  CTTTTCTCCTTTCTCTCGAGGCTCACCATTTCTATAACCCAAAGGCTACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCTTTCTCTCGAGGCTCACCATTTCTATAACCCAAAGGCTACT  768

seq1  TGGTTTCTCTCCTTAAAAACACTATACTACAGGACTTTAAAAGACCACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTCTCCTTAAAAACACTATACTACAGGACTTTAAAAGACCACAG  818

seq1  TGCACATTTATTCATTTGAATGCAGTGTAGCGTGTGGCTAATTAGGAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTATTCATTTGAATGCAGTGTAGCGTGTGGCTAATTAGGAGAA  868

seq1  CATGGAACTAAACTTCCTGGTTTTAAATTCCTTTGTAGCATTTTGCCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACTAAACTTCCTGGTTTTAAATTCCTTTGTAGCATTTTGCCTTG  918

seq1  TTGAATGTCAGTTTATTAGCATATCGACTTCTTCAACTGTCAAATTTGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTCAGTTTATTAGCATATCGACTTCTTCAACTGTCAAATTTGAA  968

seq1  TGATGCCAAGATAATAATGATTATGATAATGGAAACAATAGTATTAGATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAAGATAATAATGATTATGATAATGGAAACAATAGTATTAGATG  1018

seq1  TTTTCATATATGACAACTAAAATGCATGTACATGCATCTCAAACAGGACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATATGACAACTAAAATGCATGTACATGCATCTCAAACAGGACA  1068

seq1  CCTAAATACAAAATAGAAAACTTTTGCCTGCTGGTCCTGACTATATGTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATACAAAATAGAAAACTTTTGCCTGCTGGTCCTGACTATATGTGT  1118

seq1  CCTTGGTTCATCTTCTACTCCCTGCTGACGTTTGTGTATTTCCATGGTCC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTCATCTTCTACTCCCTGCTGACGTTTGTGTATTTCCATGGTCC  1168

seq1  TGGTCATGTTGTCTTTCTTAAGAATTC  1225
      |||||||||||||||||||||||||||
seq2  TGGTCATGTTGTCTTTCTTAAGAATTC  1195


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