BAC Information

Click to search

BAC

Clone NameB6Ng01-040L02
Chromosome6 (Build37)
Map Location 77,388,128 - 77,519,944
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L02.bB6Ng01-040L02.g
ACCDH867577DH867578
length1,055655
definitionDH867577|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L02, 5' end.DH867578|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,518,875 - 77,519,944)(77,388,128 - 77,388,782)
sequence
gaattctcttgcagacacaggctttgccagtcttagaagggcaaagacca
attggagtcactttatatttctaactttcctcaaaaagaagtttattggt
ttgtttaattatttgtatctttaaaataatagtactccacataagaacac
attaaaattaactgcatattttctcatcttccaaacacagctgttttttt
aacatttcctggaaatgtttctattatttttctatataaacgttttattt
tattattcatttttgtctagaagtagataacttagctatccatttgaaag
cagtaaagcactagattgtttttggattgcttattaaattacattcattt
acttctttgagtaacaattttatactgcatagggtactgaatcttgcagg
tgtattgccaagtcatacatcagcttatcttctttggtctgagagaaatt
agtatatgtagccaacatatatttgagtactcactatttccctataatgg
agcaatgggtactaatgatcatgacaatttgcccaaggagactcactagg
gatacatagaggttactaggctatagttactttattgctacagagattca
cacagaatgttataggagtaactaaattgtatctagggagctaggagtga
agccatgatgagaatacttaacagaaacaacacaaggaagggaagaaggg
tggaagggtctattttgactcatagtttcagagggtgtgtttccatagtg
gctggaaaggcagagaggaatggttcagtcttggtggtgagatcagacag
agggcttcttcatgtatggcacccagtaaacagaagagagctggcttttt
accagagctaagtaaaaccttcaaaggcctgcccctagttagaaacctcc
ctcaaccacctcctctaactcctgtggttctacaccttcaaatgagtggc
agttcctagtgaggagagaacaaatcagagaggctatttgtccttccttt
ggctcaggtactaaacattgagtgacaattcatatttcccagcattcaga
tgaag
gaattccctatttagataaaagtattgagtgattcctgagctgaggtcag
tgtccacaggagatacatcaatcagagaaatcaaagaactctttccagta
ctgcgtgtagttctaccaatgactgactgccttagaacctatgttctagc
tctgtggtttttacttcccttatgcctctatgcctatattctcatactta
acattcttgcctactctcttcttaatcccattgaaaactagagaacaaaa
caaaacaaaacaaaacaaaacaaaacaaaacaaagcaggcatttaatttg
gccttggtgcttcaggcctacttgagcaaggattatggaatgtgggttgg
gcagaatctaggagatgaggttgttgaagagaatggaagccagtggagac
ctgaaaataagcttttctttagaaatgttctctagtctcaccaagacaca
ttacctctctctgggaaagccactgagctagcatttactattttgagatc
atgatccactttccaacctacctctaacctccatacccacctcccaaagt
aatttcttcttgtaagatcttgacaggagtattaaaaattcataaatgta
ttgccttttgcttgcaatgaaaactacagtgaagatttttttgctaaaaa
ttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77518875_77519944
seq2: B6Ng01-040L02.b_48_1102 (reverse)

seq1  CTTCATCCTGGAATGCTTGGGAAAATATTGAATTTGTCACTCCAATGTTT  50
      |||||||   |||||||  || ||||| |||| |||||||| ||||| ||
seq2  CTTCATC--TGAATGCT--GGGAAATA-TGAA-TTGTCACT-CAATG-TT  42

seq1  TAGTAACCTGAGCCAAAGGGAAGGACAGAATAGCCTCTTCTGAATTTGTT  100
      |||| |||||||||||| ||||||||| ||||||||| |||| |||||||
seq2  TAGT-ACCTGAGCCAAA-GGAAGGACA-AATAGCCTC-TCTG-ATTTGTT  87

seq1  CTCTCCTCACTAGGAACTTGCCACTCATTTGAAGGTTGTAGAACCACAGG  150
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CTCTCCTCACTAGGAAC-TGCCACTCATTTGAAGG-TGTAGAACCACAGG  135

seq1  AGTTAGAGGAGGTGGTTGAGGGAGGTTTCTAACTAGGGGCAGGCCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGGAGGTGGTTGAGGGAGGTTTCTAACTAGGGGCAGGCCTTTGA  185

seq1  AGGTTTTACTTAGCTCTGGTAAAAAGCCAGCTCTCTTCTGTTTACTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTACTTAGCTCTGGTAAAAAGCCAGCTCTCTTCTGTTTACTGGGT  235

seq1  GCCATACATGAAGAAGCCCTCTGTCTGATCTCACCACCAAGACTGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACATGAAGAAGCCCTCTGTCTGATCTCACCACCAAGACTGAACCA  285

seq1  TTCCTCTCTGCCTTTCCAGCCACTATGGAAACACACCCTCTGAAACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTGCCTTTCCAGCCACTATGGAAACACACCCTCTGAAACTATG  335

seq1  AGTCAAAATAGACCCTTCCACCCTTCTTCCCTTCCTTGTGTTGTTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAATAGACCCTTCCACCCTTCTTCCCTTCCTTGTGTTGTTTCTGT  385

seq1  TAAGTATTCTCATCATGGCTTCACTCCTAGCTCCCTAGATACAATTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTCTCATCATGGCTTCACTCCTAGCTCCCTAGATACAATTTAGT  435

seq1  TACTCCTATAACATTCTGTGTGAATCTCTGTAGCAATAAAGTAACTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTATAACATTCTGTGTGAATCTCTGTAGCAATAAAGTAACTATAG  485

seq1  CCTAGTAACCTCTATGTATCCCTAGTGAGTCTCCTTGGGCAAATTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAACCTCTATGTATCCCTAGTGAGTCTCCTTGGGCAAATTGTCAT  535

seq1  GATCATTAGTACCCATTGCTCCATTATAGGGAAATAGTGAGTACTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTAGTACCCATTGCTCCATTATAGGGAAATAGTGAGTACTCAAAT  585

seq1  ATATGTTGGCTACATATACTAATTTCTCTCAGACCAAAGAAGATAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGGCTACATATACTAATTTCTCTCAGACCAAAGAAGATAAGCTG  635

seq1  ATGTATGACTTGGCAATACACCTGCAAGATTCAGTACCCTATGCAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGACTTGGCAATACACCTGCAAGATTCAGTACCCTATGCAGTATA  685

seq1  AAATTGTTACTCAAAGAAGTAAATGAATGTAATTTAATAAGCAATCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTACTCAAAGAAGTAAATGAATGTAATTTAATAAGCAATCCAAA  735

seq1  AACAATCTAGTGCTTTACTGCTTTCAAATGGATAGCTAAGTTATCTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTAGTGCTTTACTGCTTTCAAATGGATAGCTAAGTTATCTACTT  785

seq1  CTAGACAAAAATGAATAATAAAATAAAACGTTTATATAGAAAAATAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAAAAATGAATAATAAAATAAAACGTTTATATAGAAAAATAATAG  835

seq1  AAACATTTCCAGGAAATGTTAAAAAAACAGCTGTGTTTGGAAGATGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCCAGGAAATGTTAAAAAAACAGCTGTGTTTGGAAGATGAGAA  885

seq1  AATATGCAGTTAATTTTAATGTGTTCTTATGTGGAGTACTATTATTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGTTAATTTTAATGTGTTCTTATGTGGAGTACTATTATTTTAA  935

seq1  AGATACAAATAATTAAACAAACCAATAAACTTCTTTTTGAGGAAAGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAAATAATTAAACAAACCAATAAACTTCTTTTTGAGGAAAGTTAG  985

seq1  AAATATAAAGTGACTCCAATTGGTCTTTGCCCTTCTAAGACTGGCAAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGTGACTCCAATTGGTCTTTGCCCTTCTAAGACTGGCAAAGC  1035

seq1  CTGTGTCTGCAAGAGAATTC  1070
      ||||||||||||||||||||
seq2  CTGTGTCTGCAAGAGAATTC  1055

seq1: chr6_77388128_77388782
seq2: B6Ng01-040L02.g_68_722

seq1  GAATTCCCTAGTCAGATAAAAGTATTGAGTGATTCCTGAGCTGAGGTCAG  50
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATTTAGATAAAAGTATTGAGTGATTCCTGAGCTGAGGTCAG  50

seq1  TGTCCACAGGAGATACATCAATCAGAGAAATCAAAGAACTCTTTCCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAGGAGATACATCAATCAGAGAAATCAAAGAACTCTTTCCAGTA  100

seq1  CTGCGTGTAGTTCTACCAATGACTGACTGCCTTAGAACCTATGTTCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGTAGTTCTACCAATGACTGACTGCCTTAGAACCTATGTTCTAGC  150

seq1  TCTGTGGTTTTTACTTCCCTTATGCCTCTATGCCTATATTCTCATACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTTTTTACTTCCCTTATGCCTCTATGCCTATATTCTCATACTTA  200

seq1  ACATTCTTGCCTACTCTCTTCTTAATCCCATTGAAAACTAGAGAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGCCTACTCTCTTCTTAATCCCATTGAAAACTAGAGAACAAAA  250

seq1  CAAAACAAAACAAAACAAAACAAAACAAAACAAAGCAGGCATTTAATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACAAAACAAAACAAAGCAGGCATTTAATTTG  300

seq1  GCCTTGGTGCTTCAGGCCTACTTGAGCAAGGATTATGGAATGTGGGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTGCTTCAGGCCTACTTGAGCAAGGATTATGGAATGTGGGTTGG  350

seq1  GCAGAATCTAGGAGATGAGGTTGTTGAAGAGAATGGAAGCCAGTGGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTAGGAGATGAGGTTGTTGAAGAGAATGGAAGCCAGTGGAGAC  400

seq1  CTGAAAATAAGCTTTTCTTTAGAAATGTTCTCTAGTCTCACCAAGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATAAGCTTTTCTTTAGAAATGTTCTCTAGTCTCACCAAGACACA  450

seq1  TTACCTCTCTCTGGGAAAGCCACTGAGCTAGCATTTACTATTTTGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTCTCTGGGAAAGCCACTGAGCTAGCATTTACTATTTTGAGATC  500

seq1  ATGATCCACTTTCCAACCTACCTCTAACCTCCATACCCACCTCCCAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCACTTTCCAACCTACCTCTAACCTCCATACCCACCTCCCAAAGT  550

seq1  AATTTCTTCTTGTAAGATCTTGACAGGAGTATTAAAAATTCATAAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTCTTGTAAGATCTTGACAGGAGTATTAAAAATTCATAAATGTA  600

seq1  TTGCCTTTTGCTTGCAATGAAAACTACAGTGAAGATTTTTTTGCTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTGCTTGCAATGAAAACTACAGTGAAGATTTTTTTGCTAAAAA  650

seq1  TTCTT  655
      |||||
seq2  TTCTT  655