BAC Information

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BAC

Clone NameB6Ng01-040P03
Chromosome6 (Build37)
Map Location 141,596,945 - 141,723,011
singlet/doubletdoublet
Overlap geneSlco1b2, EG435927
Upstream geneAebp2, EG664868, LOC664875, Pde3a, Slco1c1
Downstream geneSlco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040P03.bB6Ng01-040P03.g
ACCDH867757DH867758
length1,017986
definitionDH867757|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P03, 5' end.DH867758|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,596,945 - 141,597,982)(141,722,431 - 141,723,011)
sequence
gaattctataaatagtatatacttcattggttaacattcccccccccctt
tctgctttttcttagatatttttggcagccctctcattcagctacatatg
caaggcactaggtggagtcattatgaaaagttccatcactcaaatagaaa
gaagatttgacataccatcttccatttccggtttgattgatggaggcttt
gaaattggtaatgtttatttctattttaaccaccagacttacagagggaa
atagagtccagtcatacaatgtaaccatgtctttcaacatgcaatatcat
ttttattgtcatgtcttgtgaagcagtgctgctgatgcctaggagttaga
gtcagtgatactactaaatatgctacaaagtgaactccaactactctgaa
aagagggttttaaaagattgattttgtatctacctgttgctttcaaacta
actcttgggagtctcatcctactctctctcaagaccagaggtgaagaagt
tgaggagctatggtgcctctaatgtaaggagtaacgaagagctttgggat
gacctgtgttggatcactgctctttaactccctggggattgctctagaac
actgcagatgttactcagttgccatcactttgactttcatatcttcttcc
atgatacccgagctccatgcaattacacaaagggattctcctctaacctc
atgaagcaggaggttgttgtatttgctccttcttcttcttcatttttttt
tctctttaattatttggagaccctttcgcctatatttatcatatggattt
ccaacagttcctagaaatttgaggatcattttccttaaaacttgacttag
ggtatatttaagccagtagttttataaataattacataaaggactaccca
tctgtctttcctcatgaatcctaaaacttttttgatgcaaaggaaatttt
acatcaaatatatatatatatatatatatatatatatatatatattgcag
gattcacctttccctgt
gaattccaggttttatttggttgcttagaattgaaaggaaggttctcaat
gtttggaataaaattttatatccatggaaccacctgtgcttgacagttct
ataccaacaccacacaggctagagtcatttgagaagaagaatcctcaact
gagaaagtatcccaatgagagataaccaatggcctagtcagcagagcatt
ttcttgattgatgattgattttagaggatccatgtaactgtgggtggggt
aatccctgggcaggaaattttcagttgtgagagaaagcaaactgagcatg
tcatgacaatcaaagaaggaggcagggttcctccatggcttctgcgttgg
ttcttgcatccaggttgctgccttgaggtcctgccctggttgtctcggtg
ataaactgagatttggaacaattaaataaataaataaataaataaataaa
taaataaataaaaactgactttttttcaatttgctattgatcatgttatt
tcatcagaagattcgaaactgaataaagcatccttgccctaagagagttt
ttgttattttgccttgtagtttttttctttctggttttgttttgttttgt
ttgtttttaagaatgacttatttcaataaaaaattaataactgtctgttt
tcttgtaaagagaatagtaagacacttaaagagttgaatctggacacaat
caaaagaataacatggaagaaactgagacaaggattctaacccgtggggt
cagatgtttttccaaggtcaaggtatggattatttctatgtatatatttc
tggaagtcttcttcaacaaacattgaaagtgctcatagtattactcagtt
ttcatgaaatctacaataggaaagacacttttacccaatatgttgttaat
ttcttgccttagagatttggttttaataattacatatgtttatccctgat
tattcatccagaaaatatataaaaatgattagagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141596945_141597982
seq2: B6Ng01-040P03.b_47_1063

seq1  GAATTCTATAAATAGTATATACTTCATTGGTTAACATTCCCCCCCCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAATAGTATATACTTCATTGGTTAACATTCCCCCCCCCCTT  50

seq1  TCTGCTTTTTCTTAGATATTTTTGGCAGCCCTCTCATTCAGCTACATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTCTTAGATATTTTTGGCAGCCCTCTCATTCAGCTACATATG  100

seq1  CAAGGCACTAGGTGGAGTCATTATGAAAAGTTCCATCACTCAAATAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACTAGGTGGAGTCATTATGAAAAGTTCCATCACTCAAATAGAAA  150

seq1  GAAGATTTGACATACCATCTTCCATTTCCGGTTTGATTGATGGAGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTGACATACCATCTTCCATTTCCGGTTTGATTGATGGAGGCTTT  200

seq1  GAAATTGGTAATGTTTATTTCTATTTTAACCACCAGACTTACAGAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTAATGTTTATTTCTATTTTAACCACCAGACTTACAGAGGGAA  250

seq1  ATAGAGTCCAGTCATACAATGTAACCATGTCTTTCAACATGCAATATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTCCAGTCATACAATGTAACCATGTCTTTCAACATGCAATATCAT  300

seq1  TTTTATTGTCATGTCTTGTGAAGCAGTGCTGCTGATGCCTAGGAGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGTCATGTCTTGTGAAGCAGTGCTGCTGATGCCTAGGAGTTAGA  350

seq1  GTCAGTGATACTACTAAATATGCTACAAAGTGAACTCCAACTACTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGATACTACTAAATATGCTACAAAGTGAACTCCAACTACTCTGAA  400

seq1  AAGAGGGTTTTAAAAGATTGATTTTGTATCTACCTGTTGCTTTCAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTTTTAAAAGATTGATTTTGTATCTACCTGTTGCTTTCAAACTA  450

seq1  ACTCTTGGGAGTCTCATCCTACTCTCTCTCAAGACCAGAGGTGAAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGGAGTCTCATCCTACTCTCTCTCAAGACCAGAGGTGAAGAAGT  500

seq1  TGAGGAGCTATGGTGCCTCTAATGTAAGGAGTAACGAAGAGCTTTGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCTATGGTGCCTCTAATGTAAGGAGTAACGAAGAGCTTTGGGAT  550

seq1  GACCTGTGTTGGATCACTGCTCTTTAACTCCCTGGGGATTGCTCTAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGTTGGATCACTGCTCTTTAACTCCCTGGGGATTGCTCTAGAAC  600

seq1  ACTGCAGATGTTACTCAGTTGCCATCACTTTGACTTTCATATCTTCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGATGTTACTCAGTTGCCATCACTTTGACTTTCATATCTTCTTCC  650

seq1  ATGATACCCGAGCTCCATGCAATTACACAAAGGGATTCTCCTCTAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCGAGCTCCATGCAATTACACAAAGGGATTCTCCTCTAACCTC  700

seq1  ATGAAGCAGGAGGTTGTTGTATTTGCTCCTTCTTCTTCTTCATTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAGGAGGTTGTTGTATTTGCTCCTTCTTCTTCTTCATTTTTTTT  750

seq1  TCTCTTTAATTATTTGGAGACCCTTTCGCCTATATTTATCATATGGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAATTATTTGGAGACCCTTTCGCCTATATTTATCATATGGATTT  800

seq1  CCAACAGTTCCTAGAAATTTGAGGATCATTTTCCTTAAAACTTGACTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTTCCTAGAAATTTGAGGATCATTTTCCTTAAAACTTGACTTAG  850

seq1  GGTATATTTAAGCCAGTAGTTTTATAAATAATTACATAAAGGACTACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTAAGCCAGTAGTTTTATAAATAATTACATAAAGGACTACCCA  900

seq1  TCTGTCTTTCCTCATGAATCCTAAAACTTTTTTGATGCAAAGGATATTTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGTCTTTCCTCATGAATCCTAAAACTTTTTTGATGCAAAGGAAATTTT  950

seq1  ACATCATATATATATATATATATATATATATATATATATATATATATATA  1000
      |||||                      | |||||||||||||||||||||
seq2  ACATC----------------------AAATATATATATATATATATATA  978

seq1  TATATATATATATATATTGCAGTATTC-CACTTCCCTGT  1038
      |||||||||||||||||||||| |||| |  ||||||||
seq2  TATATATATATATATATTGCAGGATTCACCTTTCCCTGT  1017

seq1: chr6_141722431_141723011
seq2: B6Ng01-040P03.g_70_650 (reverse)

seq1  GAAAGAAAAAAACTACAAGGCAAAATAACAAAAACTCTCTTAGGGCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAACTACAAGGCAAAATAACAAAAACTCTCTTAGGGCAAGG  50

seq1  ATGCTTTATTCAGTTTCGAATCTTCTGATGAAATAACATGATCAATAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTATTCAGTTTCGAATCTTCTGATGAAATAACATGATCAATAGCA  100

seq1  AATTGAAAAAAAGTCAGTTTTTATTTATTTATTTATTTATTTATTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAAAAGTCAGTTTTTATTTATTTATTTATTTATTTATTTATTT  150

seq1  ATTTATTTAATTGTTCCAAATCTCAGTTTATCACCGAGACAACCAGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTAATTGTTCCAAATCTCAGTTTATCACCGAGACAACCAGGGCA  200

seq1  GGACCTCAAGGCAGCAACCTGGATGCAAGAACCAACGCAGAAGCCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCAAGGCAGCAACCTGGATGCAAGAACCAACGCAGAAGCCATGGA  250

seq1  GGAACCCTGCCTCCTTCTTTGATTGTCATGACATGCTCAGTTTGCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTGCCTCCTTCTTTGATTGTCATGACATGCTCAGTTTGCTTTCT  300

seq1  CTCACAACTGAAAATTTCCTGCCCAGGGATTACCCCACCCACAGTTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTGAAAATTTCCTGCCCAGGGATTACCCCACCCACAGTTACAT  350

seq1  GGATCCTCTAAAATCAATCATCAATCAAGAAAATGCTCTGCTGACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCTAAAATCAATCATCAATCAAGAAAATGCTCTGCTGACTAGGC  400

seq1  CATTGGTTATCTCTCATTGGGATACTTTCTCAGTTGAGGATTCTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTATCTCTCATTGGGATACTTTCTCAGTTGAGGATTCTTCTTCT  450

seq1  CAAATGACTCTAGCCTGTGTGGTGTTGGTATAGAACTGTCAAGCACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACTCTAGCCTGTGTGGTGTTGGTATAGAACTGTCAAGCACAGGT  500

seq1  GGTTCCATGGATATAAAATTTTATTCCAAACATTGAGAACCTTCCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATGGATATAAAATTTTATTCCAAACATTGAGAACCTTCCTTTCA  550

seq1  ATTCTAAGCAACCAAATAAAACCTGGAATTC  581
      |||||||||||||||||||||||||||||||
seq2  ATTCTAAGCAACCAAATAAAACCTGGAATTC  581