BAC Information

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BAC

Clone NameB6Ng01-040P16
Chromosome6 (Build37)
Map Location 59,386,535 - 59,387,748
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040P16.bB6Ng01-040P16.g
ACCDH867779DH867780
length9331,195
definitionDH867779|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P16, 5' end.DH867780|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacaatttagtg
catttgttgttctgattattatgtgtcgagaggaatttcttttctggtcc
agtctatttagagttctgtaggcttcttgtatgttcatgggcatctcttt
ctttatcttagtgaagtattcttctataattttgttgaggatatttgctg
gccctttaagttgaaaatcttcattcttatctactcctattatccttagg
ttgggtcttctcatggtgtcctggatttcctggatgttttgaattattat
atttttgcgttttgtattttctttgattgttgtgccgatgttctctatgg
aatcttctgaacctgagaatccctttccatctcttttattctgttgctga
tgctcacatctatggttccagatttctttcctaggttttctatctccagc
gttgcctcacttttggttttctttattgtgtttacttccctttttaggtc
ttgtatggttttgttcaattccatcacctgtttggttgtgttttcctgtt
ttttctttaaggatttgtaactctttagcagtgtttctcctgtatttctt
ttatttttattttctttttttaatattttatacatattttcctcaattac
atttccaatgctatcccaagagtcccccatacactcccccccacttccct
acccacccatttccatttttttggccctgcattccccggtactggggcat
attaagttgtgtgtccaatgggcctctctttca

gaattctagagtgtcaaggataaggttctttatatcctgttctttaaatt
gctgactacacagaacatatgcattcatacagggaactgtaatgtctaaa
taaacaatagcattttgttttatagattgaatttatccctgataaaatta
aatttgtcaaaaatatgaccagattttatgaaaattctacatatatgaaa
agtaagtaaaaaaaagtatgtccttgggttggaaggcttcgcagttaaga
atacttgctactcttttagagggcttgagtttggctcccattgctcacac
cacatgactcacacttatttgtaactcctcatttagagaaccccaaatct
atctgtagcctttgtgtatacacatagcacacacatggcatatatgtgca
cctgcaaacacatatacacacacagacatacatgggacaaacaaacattc
atacacacatcacatacacacacacacacacacacacacacacacacaca
cagacactaaaaataaatataaaaaaatcttgtccatttaacaaaaacat
ttttctaatcacttcttagatgatcatttcaaattgttatttacaggagt
aacttgtctaatcattcatttatcatggagagtcaatatggccttttgta
aaaaaaacatattatttttccctgtacaaataacgttataattatactcg
tatattatgaactgaaaaccaaaaatgcttcaatttaaacattaataaca
tatcatagaaaaaatgccaaactatctatagtcacttaaaatagaattat
gtttaaaattctataaaatgatgtaaataagatctatacataattattta
gggattccccatgtactatgtaacatcaaaggaatttgaactgtaccgat
ttatgtaactttattttaatgggaagcctatggttaatagccattggatt
taatatacatgacaatatgataactttgttggctttcttagggttgaaag
gatttagagaatttttgtcttaccaaatttttacaagaactgcctaggaa
gtttactggaaagatattacttacattgtgtggacaaatcacaatggcct
gggcatagctgaatgctttgatactagtcctgtctgcttgtaaaggatca
tgtgatagtgcaggtaactgtgactgcacatgctggaatgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59386535_59387748
seq2: B6Ng01-040P16.g_69_1263

seq1  GAATTCTAGAGTGTCAAGGATAAGGTTCTTTATATCCTGTTCTTTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGTGTCAAGGATAAGGTTCTTTATATCCTGTTCTTTAAATT  50

seq1  GCTGACTACACAGAACATATGCATTCATACAGGGAACTGTAATGTCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTACACAGAACATATGCATTCATACAGGGAACTGTAATGTCTAAA  100

seq1  TAAACAATAGCATTTTGTTTTATAGATTGAATTTATCCCTGATAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATAGCATTTTGTTTTATAGATTGAATTTATCCCTGATAAAATTA  150

seq1  AATTTGTCAAAAATATGACCAGATTTTATGAAAATTCTACATATATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCAAAAATATGACCAGATTTTATGAAAATTCTACATATATGAAA  200

seq1  AGTAAGTAAAAAAAAGTATGTCCTTGGGTTGGAAGGCTTCGCAGTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTAAAAAAAAGTATGTCCTTGGGTTGGAAGGCTTCGCAGTTAAGA  250

seq1  ATACTTGCTACTCTTTTAGAGGGCTTGAGTTTGGCTCCCATTGCTCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCTACTCTTTTAGAGGGCTTGAGTTTGGCTCCCATTGCTCACAC  300

seq1  CACATGACTCACACTTATTTGTAACTCCTCATTTAGAGAACCCCAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTCACACTTATTTGTAACTCCTCATTTAGAGAACCCCAAATCT  350

seq1  ATCTGTAGCCTTTGTGTATACACATAGCACACACATGGCATATATGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGCCTTTGTGTATACACATAGCACACACATGGCATATATGTGCA  400

seq1  CCTGCAAACACATATACACACACAGACATACATGGGACAAACAAACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAACACATATACACACACAGACATACATGGGACAAACAAACATTC  450

seq1  ATACACACATCACATACACACACACACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATCACATACACACACACACACACACACACACACACACACACA  500

seq1  CAGACACTAAAAATAAATATAAAAAAATCTTGTCCATTTAACAAAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTAAAAATAAATATAAAAAAATCTTGTCCATTTAACAAAAACAT  550

seq1  TTTTCTAATCACTTCTTAGATGATCATTTCAAATTGTTATTTACAGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCACTTCTTAGATGATCATTTCAAATTGTTATTTACAGGAGT  600

seq1  AACTTGTCTAATCATTCATTTATCATGGAGAGTCAATATGGCCTTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTAATCATTCATTTATCATGGAGAGTCAATATGGCCTTTTGTA  650

seq1  AAAAAAACATATTATTTTTCCCTGTACAAATAACGTTATAATTATACTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATATTATTTTTCCCTGTACAAATAACGTTATAATTATACTCG  700

seq1  TATATTATGAACTGAAAACCAAAAATGCTTCAATTTAAACATTAATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATGAACTGAAAACCAAAAATGCTTCAATTTAAACATTAATAACA  750

seq1  TATCATAGAAAAAATGCCAAACTATCTATAGTCACTTAAAATAGAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGAAAAAATGCCAAACTATCTATAGTCACTTAAAATAGAATTAT  800

seq1  GTTTAAAATTCTATAAAATGATGTAAATAAGATCTATACATAATTATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATTCTATAAAATGATGTAAATAAGATCTATACATAATTATTTA  850

seq1  GGGATTCCCCATGTACTATGTAACA-CTAAGGAATTTGAACTGTACCGAA  899
      ||||||||||||||||||||||||| | ||||||||||||||||||||| 
seq2  GGGATTCCCCATGTACTATGTAACATCAAAGGAATTTGAACTGTACCGAT  900

seq1  TTATGTAAC-TTATTTAAAT-GGAAGCCTATAGTTTAATAGCCATTGAAT  947
      ||||||||| |||||| ||| |||||||||| | ||||||||||||| ||
seq2  TTATGTAACTTTATTTTAATGGGAAGCCTAT-GGTTAATAGCCATTGGAT  949

seq1  TAATTATACATGACAATATGAATAACTTTGTTTGCCTTCTTATGGTTGTA  997
      | | |||||||||||||||| ||||||||||| || |||||| ||||| |
seq2  TTAATATACATGACAATATG-ATAACTTTGTTGGCTTTCTTAGGGTTG-A  997

seq1  AAGAATTTAAGAGAAATTGTGTCTTACCAAATTTTTACAAGAACTGCCTA  1047
      ||| |||| |||||| || |||||||||||||||||||||||||||||||
seq2  AAGGATTT-AGAGAATTTTTGTCTTACCAAATTTTTACAAGAACTGCCTA  1046

seq1  GGAAAGTTTAACTGGATAAGATATTACTTACAATTGTGT-GACAAAACAC  1096
      || |||||| |||||| |||||||||||||| ||||||| |||||| |||
seq2  GG-AAGTTT-ACTGGA-AAGATATTACTTAC-ATTGTGTGGACAAATCAC  1092

seq1  AAATGCACTGGGCATTAAGCTGAATGCTTTGATACCTAGTCCTGTCCTGC  1146
       ||||  ||||||||  ||||||||||||||||| |||||||||| ||||
seq2  -AATGGCCTGGGCAT--AGCTGAATGCTTTGATA-CTAGTCCTGT-CTGC  1137

seq1  TATGAAAAGGTACCTAGTTGTAAGGGCCAAAGTTAACCTGTAAGCTGCAC  1196
      | || |||||  |  |  ||  || ||   || ||| |||| | ||||||
seq2  T-TGTAAAGGATC--ATGTGATAGTGC---AGGTAA-CTGTGA-CTGCAC  1179

seq1  TTGCCCTGGAATGCTGGG  1214
       ||  |||||||||||||
seq2  ATG--CTGGAATGCTGGG  1195


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