BAC Information

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BAC

Clone NameB6Ng01-040P17
Chromosome6 (Build37)
Map Location 49,035,608 - 49,171,821
singlet/doubletdoublet
Overlap geneIgf2bp3, LOC100040626
Upstream geneZfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
Downstream geneTra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040P17.bB6Ng01-040P17.g
ACCDH867781DH867782
length1,0951,127
definitionDH867781|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P17, 5' end.DH867782|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,170,714 - 49,171,821)(49,035,608 - 49,036,748)
sequence
gaattcttaatattttgtttttttgtttgttttttagtttattttctgtt
tggctttttaaatacatggccatgtatttcagtaaaaaaacaaagatgtg
atttgaattgtggcagtgtagaagtataagagcaaagaaactgctctaag
gaattctaagtatctttcaataaagaccaaagctgtgacatctctctgga
tttaaatccccaagacaaaacgtgacagtatggcaggaatccttccttgt
tctggcaggttttgattgactctgatgctgttattttgttcccgtcctct
ctatgaattaggttttagtggctgaactaggacgaaactgtctatggcaa
gagcatagagttagtctagctatggggaatttcaaatagtaatatgtttt
attcttgtttatatcaaatacctatctttagaagtcctcatgtattcaaa
atttatggaaaaaaatatcccccaagtctttgaaaaaggacaaaaaggat
aggaacaacttactttactgtgaaaaaatattaaaaagaaagaaaataag
aaacattaccttaatgaataatactagacctccaaaaatcaaaatactaa
atacaacttgtataaaacagttctggtattgatattaaattaaacctcta
tccaaacaaaatgttctctttaggaaggcaatagtacactttaactgttc
atcgggatatgcctgtaaacttagcactcaggaggctgaggcaggagaat
caccctttcaaagtcagcctgggctacaaaacaaaacaaaaacaaagatc
acactatcttagctggtaaaaacaaaacaaacactgctactaacatttat
attaactataacaatatatacttgctaatttaattaataatatagtcatt
ttaatgtaaacaatactagtaagggaagcattatgttttagaagcatgct
aggttaatttgataaagatctcagataggttttttcccccaactatatct
aatggtacatactctttatcactcagctaaatattttaaaataaatcaat
cctcgaacttgcacctacattggttggtctcccctaagctgggac
gaattcagttgtaaaaagggggcactttttggctaaaactacaaaattaa
ccggttttatgaaaatgtttaggaattcattttcacaatgtctaaatgat
atgctgatactcagaaaaacttaaaggcatgtagaagttaatcctgaaac
acaatgaggcaaagtggttttctgaagggttacataataccctcagggtc
agtgtaatatgactgtaaccacattatgaacaaagcaacaagaacaactc
agaaagcagcatggccttgaggatcacccgcacctacaagtatccataca
gggctttgccactaagttgaggaagggcaaagggaagtccgatgtttcca
cagtctgaattcccaaaaccgtttgctggatcccctaccttgactcgctg
gcaggtaatgcagggcagacagaaactctgctacatttcatggaagactt
ttggtggacttaattcttccactgtttaaaacatctttaaaatagcttag
gctcgagacagtgccaggcacaaggaaatggagattttgttgcccttcgg
ccctgtcataccacctgactccccctggtcttcacaaagcaatcctttcc
atgtctgctcagagtatggtctgatctcaagtgtgttagcaagctgagca
tctggtaaaacaaactcaagctgattttgtttaaattctgcatttcttca
ctgacatgaatttcttccttttcgtggtgacagtcaaagcacaaagcatt
ttgcaaattcccacacatagctaaacacaaatcccccaagtctcctggag
ccctgtacactagctgtcctttaccctagctgtcctgtacactgggccgt
cccagcccctgcctgcttggtcagtaccgtcacaaccttcccagatagga
acaaaggagtacatggcatggctgctcttgagaataggcactgctcctta
tcttgaacagttagtggactttcaactttcaaggctcaaaatgcaaaatt
atttccacctttactcttcaccagccagacgtaaaatactttttcatgac
ttgcctattcagctgataactgtaatttatttttttaaaaacggttggag
ttttttaagatataaaattttcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49170714_49171821
seq2: B6Ng01-040P17.b_44_1138 (reverse)

seq1  GTCCCAGCTTTAAGGGGGAGCCCAACCCACTGTAGGTGCAAAGTTTGAGG  50
      ||||||||||    |||||| |||| ||| ||||||||| ||||| ||||
seq2  GTCCCAGCTT---AGGGGAGACCAA-CCAATGTAGGTGC-AAGTTCGAGG  45

seq1  ATTTGATTTTATTTTAAAATATTTTAGCTGAAGTTGATAAAGAGTATGGT  100
      | |||| |||||||||||||| |||||||||   ||||||||||||| ||
seq2  A-TTGA-TTTATTTTAAAATA-TTTAGCTGA--GTGATAAAGAGTAT-GT  89

seq1  ACCATTAGATATAGTTGGGGGGAAAAAACCTAATCTGAGATCTTTATCAA  150
      |||||||||||||||| |||||||||||||| |||||||||||||||| |
seq2  ACCATTAGATATAGTT-GGGGGAAAAAACCT-ATCTGAGATCTTTATC-A  136

seq1  AATTAACCTAGCATGCTTCTAAAACAT-ATGCTTCCCTTACTAGTATTGT  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTAACCTAGCATGCTTCTAAAACATAATGCTTCCCTTACTAGTATTGT  186

seq1  TTACATTAAAATGACTATATTATTAATTAAATTAGCAAGTATATATTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAAAATGACTATATTATTAATTAAATTAGCAAGTATATATTGTT  236

seq1  ATAGTTAATATAAATGTTAGTAGCAGTGTTTGTTTTGTTTTTACCAGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATATAAATGTTAGTAGCAGTGTTTGTTTTGTTTTTACCAGCTA  286

seq1  AGATAGTGTGATCTTTGTTTTTGTTTTGTTTTGTAGCCCAGGCTGACTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGTGATCTTTGTTTTTGTTTTGTTTTGTAGCCCAGGCTGACTTT  336

seq1  GAAAGGGTGATTCTCCTGCCTCAGCCTCCTGAGTGCTAAGTTTACAGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTGATTCTCCTGCCTCAGCCTCCTGAGTGCTAAGTTTACAGGCA  386

seq1  TATCCCGATGAACAGTTAAAGTGTACTATTGCCTTCCTAAAGAGAACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCGATGAACAGTTAAAGTGTACTATTGCCTTCCTAAAGAGAACATT  436

seq1  TTGTTTGGATAGAGGTTTAATTTAATATCAATACCAGAACTGTTTTATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGATAGAGGTTTAATTTAATATCAATACCAGAACTGTTTTATAC  486

seq1  AAGTTGTATTTAGTATTTTGATTTTTGGAGGTCTAGTATTATTCATTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTATTTAGTATTTTGATTTTTGGAGGTCTAGTATTATTCATTAAG  536

seq1  GTAATGTTTCTTATTTTCTTTCTTTTTAATATTTTTTCACAGTAAAGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTTCTTATTTTCTTTCTTTTTAATATTTTTTCACAGTAAAGTAA  586

seq1  GTTGTTCCTATCCTTTTTGTCCTTTTTCAAAGACTTGGGGGATATTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCTATCCTTTTTGTCCTTTTTCAAAGACTTGGGGGATATTTTTT  636

seq1  TCCATAAATTTTGAATACATGAGGACTTCTAAAGATAGGTATTTGATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAATTTTGAATACATGAGGACTTCTAAAGATAGGTATTTGATATA  686

seq1  AACAAGAATAAAACATATTACTATTTGAAATTCCCCATAGCTAGACTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAATAAAACATATTACTATTTGAAATTCCCCATAGCTAGACTAAC  736

seq1  TCTATGCTCTTGCCATAGACAGTTTCGTCCTAGTTCAGCCACTAAAACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTCTTGCCATAGACAGTTTCGTCCTAGTTCAGCCACTAAAACCT  786

seq1  AATTCATAGAGAGGACGGGAACAAAATAACAGCATCAGAGTCAATCAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAGAGAGGACGGGAACAAAATAACAGCATCAGAGTCAATCAAAA  836

seq1  CCTGCCAGAACAAGGAAGGATTCCTGCCATACTGTCACGTTTTGTCTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGAACAAGGAAGGATTCCTGCCATACTGTCACGTTTTGTCTTGG  886

seq1  GGATTTAAATCCAGAGAGATGTCACAGCTTTGGTCTTTATTGAAAGATAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAATCCAGAGAGATGTCACAGCTTTGGTCTTTATTGAAAGATAC  936

seq1  TTAGAATTCCTTAGAGCAGTTTCTTTGCTCTTATACTTCTACACTGCCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTCCTTAGAGCAGTTTCTTTGCTCTTATACTTCTACACTGCCAC  986

seq1  AATTCAAATCACATCTTTGTTTTTTTACTGAAATACATGGCCATGTATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATCACATCTTTGTTTTTTTACTGAAATACATGGCCATGTATTT  1036

seq1  AAAAAGCCAAACAGAAAATAAACTAAAAAACAAACAAAAAAACAAAATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCAAACAGAAAATAAACTAAAAAACAAACAAAAAAACAAAATAT  1086

seq1  TAAGAATTC  1108
      |||||||||
seq2  TAAGAATTC  1095

seq1: chr6_49035608_49036748
seq2: B6Ng01-040P17.g_71_1197

seq1  GAATTCAGTTGTAAAAAGGGGGCACTTTTTGGCTAAAACTACAAAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTAAAAAGGGGGCACTTTTTGGCTAAAACTACAAAATTAA  50

seq1  CCGGTTTTATGAAAATGTTTAGGAATTCATTTTCACAATGTCTAAATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTTTATGAAAATGTTTAGGAATTCATTTTCACAATGTCTAAATGAT  100

seq1  ATGCTGATACTCAGAAAAACTTAAAGGCATGTAGAAGTTAATCCTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATACTCAGAAAAACTTAAAGGCATGTAGAAGTTAATCCTGAAAC  150

seq1  ACAATGAGGCAAAGTGGTTTTCTGAAGGGTTACATAATACCCTCAGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGGCAAAGTGGTTTTCTGAAGGGTTACATAATACCCTCAGGGTC  200

seq1  AGTGTAATATGACTGTAACCACATTATGAACAAAGCAACAAGAACAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATATGACTGTAACCACATTATGAACAAAGCAACAAGAACAACTC  250

seq1  AGAAAGCAGCATGGCCTTGAGGATCACCCGCACCTACAAGTATCCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGCATGGCCTTGAGGATCACCCGCACCTACAAGTATCCATACA  300

seq1  GGGCTTTGCCACTAAGTTGAGGAAGGGCAAAGGGAAGTCCGATGTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGCCACTAAGTTGAGGAAGGGCAAAGGGAAGTCCGATGTTTCCA  350

seq1  CAGTCTGAATTCCCAAAACCGTTTGCTGGATCCCCTACCTTGACTCGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGAATTCCCAAAACCGTTTGCTGGATCCCCTACCTTGACTCGCTG  400

seq1  GCAGGTAATGCAGGGCAGACAGAAACTCTGCTACATTTCATGGAAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAATGCAGGGCAGACAGAAACTCTGCTACATTTCATGGAAGACTT  450

seq1  TTGGTGGACTTAATTCTTCCACTGTTTAAAACATCTTTAAAATAGCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGACTTAATTCTTCCACTGTTTAAAACATCTTTAAAATAGCTTAG  500

seq1  GCTCGAGACAGTGCCAGGCACAAGGAAATGGAGATTTTGTTGCCCTTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGACAGTGCCAGGCACAAGGAAATGGAGATTTTGTTGCCCTTCGG  550

seq1  CCCTGTCATACCACCTGACTCCCCCTGGTCTTCACAAAGCAATCCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCATACCACCTGACTCCCCCTGGTCTTCACAAAGCAATCCTTTCC  600

seq1  ATGTCTGCTCAGAGTATGGTCTGATCTCAAGTGTGTTAGCAAGCTGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTCAGAGTATGGTCTGATCTCAAGTGTGTTAGCAAGCTGAGCA  650

seq1  TCTGGTAAAACAAACTCAAGCTGATTTTGTTTAAATTCTGCATTTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAAACAAACTCAAGCTGATTTTGTTTAAATTCTGCATTTCTTCA  700

seq1  CTGACATGAATTTCTTCCTTTTCGTGGTGACAGTCAAAGCACAAAGCA-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGACATGAATTTCTTCCTTTTCGTGGTGACAGTCAAAGCACAAAGCATT  750

seq1  TTGCAAATTCCCACACATAGCTAAACACAAAT-CCCCAAGTCTCCTGGAG  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGCAAATTCCCACACATAGCTAAACACAAATCCCCCAAGTCTCCTGGAG  800

seq1  CCCTGTACACTAGCTGTCCTTTACCCTAGCTGTCCTGTACACT-GGCCGT  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGTACACTAGCTGTCCTTTACCCTAGCTGTCCTGTACACTGGGCCGT  850

seq1  CCCAGCCCCTGCCTGCTTGGTCAGTACCGTCAACAACCTTCCCAGATAGG  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCAGCCCCTGCCTGCTTGGTCAGTACCGTC-ACAACCTTCCCAGATAGG  899

seq1  AACAAAGGAGTACATGGCATGGCTGCTCTTGAGAATAGGCACTGCTCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGAGTACATGGCATGGCTGCTCTTGAGAATAGGCACTGCTCCTT  949

seq1  ATCTTTGAACAGTTAGTGGACTTTCCAACTTTCAAAGGCTCAAAAAATGC  997
      ||| |||||||||||||||||||| |||||||| |||||||  |||||||
seq2  ATC-TTGAACAGTTAGTGGACTTT-CAACTTTC-AAGGCTC--AAAATGC  994

seq1  AAAATTATTTTTCCAACTTTACTC-TCACCAGCCAGACGTAAAATTACTT  1046
      |||||||  |||||| |||||||| ||||||||||||||||||| |||||
seq2  AAAATTA--TTTCCACCTTTACTCTTCACCAGCCAGACGTAAAA-TACTT  1041

seq1  TTTCAATGACTTGCCTA-TCAGCTGATAACTGTTAAATTTTATTTTTTTT  1095
      |||| |||||||||||| |||||||||||||||   | ||||||||||| 
seq2  TTTC-ATGACTTGCCTATTCAGCTGATAACTGT---AATTTATTTTTTT-  1086

seq1  AAAAAAACGGTTGGAGTTTTTATAAAGTATATAAAATTTTCAAAAA  1141
        ||||||||||||||||||| |||   ||||||||||||||||||
seq2  --AAAAACGGTTGGAGTTTTT-TAA--GATATAAAATTTTCAAAAA  1127