BAC Information

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BAC

Clone NameB6Ng01-041F13
Chromosome6 (Build37)
Map Location 87,873,163 - 88,025,721
singlet/doubletdoublet
Overlap gene8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7
Upstream geneAak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg
Downstream geneRpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F13.bB6Ng01-041F13.g
ACCDH868035DH868036
length945775
definitionDH868035|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F13, 5' end.DH868036|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,024,772 - 88,025,721)(87,873,163 - 87,873,935)
sequence
gaattccatagtccataagcaatctgtagagattctatttcaaaaacaaa
aaccaataacaaacacttctgacctttgcgggcccctaaacacactgcat
ggtgcacacatatacatggagataaaacagtcctaaacataaaataaata
cgttttatttttttaaaaaaatctggcactgtaactaaaagatcattaac
tctcacaatgatgaatgcaaaggcctccaattctgtctcgaccaggagtt
agctaagcccgtgaggaggaagtgattcggtttcttccccggaaaacttt
agcatgttctcagctcctggcctccatctctaactcgtctggcctcgccc
ctccaggctccgcccctccaggctgtgcgctgagtaaactcagcctggtt
agaactccaggctctctcctgcttgttgatgtcaatggtcctggccgacc
cggaagcagaattcccaagtcaaagacctcgcatcggataaagcagcgct
gccgctagggggtgtggaagccgcggtgacgtcctgcgacttctcttaag
ctagcctgcgcctccggaaatgaaggcttgtagcactcgctctcgccgct
tccttcctgttgttcgtgtgtggacaggcatccttgcttagaagcaatcg
ctgagatttcacctacaggatcaccactgcggagttcctgtagttgcggg
aggcaacccagaggagaagccggcgaagcagcgggtgcccatggctaaag
gaatgaagcctggtctcctagccattgtggttgggtgccaggagcacgaa
ggcgaaggtgccactccatatggtgtaatgacagtgtttccttgccagtg
ttcttgagggttttccagacacaaaacttgactgcagacaggctcccttt
ccagttttcagcacaactctttttggttttcaagacaggtttctc
tatgtagaccaggctggctgtgagctcacagagatcgaactgtctctgcc
tctggcctcctcttcctcagcctgggtgttgggattaaaggtgtgtgcca
gcgtgccctgcaagattagcaagtcaaaattgaaggctggttctttggag
aggagtaggtagacaagaaaaacagattagggtgctcagtccctgattga
cttggctttgtttgtttgatataaataaagatttaactgtttactcccta
gatgtttagtcagctatttcaaaactaaattgaactgagtgctttccttt
tctttcctccgttttctctctaccaccagccttactattttttttttcta
tgtttgggtttttgaattaagcctcttcatttatctagtagtcactcttg
ataagcctgggtttttctttgtgatatataattctgcattcttcaacctg
tttacatttgcttggggtccttcagtggtagcagactctcaagctttaaa
aggtagagccattttcagttcttctgacatccattctgttcattagccac
atgttattcctcttccaaggaaaaaaacaaaacaaaacaataagctcttc
tatatcaaataagcctctatggctggagatcttctgagttaccattcgac
tacttcccctttttacacataagtcaggtcctccaaaagctacttcctgc
tctcttcctttttcttttttgagtcagggttttctctgtgtagccctggc
tatcctgaaatttgtgcttagacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88024772_88025721
seq2: B6Ng01-041F13.b_34_978 (reverse)

seq1  GAGAAACCCTGTCTTGAAAAACCAAAAAGAATTGTTGCTGAAAACTGGAA  50
      |||||| ||||||||| ||||||||||||| ||| ||||||||||||| |
seq2  GAGAAA-CCTGTCTTG-AAAACCAAAAAGAGTTG-TGCTGAAAACTGG-A  46

seq1  AAGGGAGACTGTCTGCAGTCAAGTTTTGTGTCTTGGAAAACCCTCAAGAA  100
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGGAGCCTGTCTGCAGTCAAGTTTTGTGTC-TGGAAAACCCTCAAGAA  95

seq1  CACTGGCAAGGAAACACTGTCATTACACCATATGGAGTGGCACCTTCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAAGGAAACACTGTCATTACACCATATGGAGTGGCACCTTCGCC  145

seq1  TTCGTGCTCCTGGCACCCAACCACAATGGCTAGGAGACCAGGCTTCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGCTCCTGGCACCCAACCACAATGGCTAGGAGACCAGGCTTCATTC  195

seq1  CTTTAGCCATGGGCACCCGCTGCTTCGCCGGCTTCTCCTCTGGGTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCATGGGCACCCGCTGCTTCGCCGGCTTCTCCTCTGGGTTGCCT  245

seq1  CCCGCAACTACAGGAACTCCGCAGTGGTGATCCTGTAGGTGAAATCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAACTACAGGAACTCCGCAGTGGTGATCCTGTAGGTGAAATCTCAG  295

seq1  CGATTGCTTCTAAGCAAGGATGCCTGTCCACACACGAACAACAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGCTTCTAAGCAAGGATGCCTGTCCACACACGAACAACAGGAAGGA  345

seq1  AGCGGCGAGAGCGAGTGCTACAAGCCTTCATTTCCGGAGGCGCAGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCGAGAGCGAGTGCTACAAGCCTTCATTTCCGGAGGCGCAGGCTAG  395

seq1  CTTAAGAGAAGTCGCAGGACGTCACCGCGGCTTCCACACCCCCTAGCGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGAAGTCGCAGGACGTCACCGCGGCTTCCACACCCCCTAGCGGC  445

seq1  AGCGCTGCTTTATCCGATGCGAGGTCTTTGACTTGGGAATTCTGCTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGCTTTATCCGATGCGAGGTCTTTGACTTGGGAATTCTGCTTCCG  495

seq1  GGTCGGCCAGGACCATTGACATCAACAAGCAGGAGAGAGCCTGGAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGCCAGGACCATTGACATCAACAAGCAGGAGAGAGCCTGGAGTTCT  545

seq1  AACCAGGCTGAGTTTACTCAGCGCACAGCCTGGAGGGGCGGAGCCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCTGAGTTTACTCAGCGCACAGCCTGGAGGGGCGGAGCCTGGAG  595

seq1  GGGCGAGGCCAGACGAGTTAGAGATGGAGGCCAGGAGCTGAGAACATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGGCCAGACGAGTTAGAGATGGAGGCCAGGAGCTGAGAACATGCT  645

seq1  AAAGTTTTCCGGGGAAGAAACCGAATCACTTCCTCCTCACGGGCTTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCCGGGGAAGAAACCGAATCACTTCCTCCTCACGGGCTTAGCT  695

seq1  AACTCCTGGTCGAGACAGAATTGGAGGCCTTTGCATTCATCATTGTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGGTCGAGACAGAATTGGAGGCCTTTGCATTCATCATTGTGAGA  745

seq1  GTTAATGATCTTTTAGTTACAGTGCCAGATTTTTTTAAAAAAATAAAACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGATCTTTTAGTTACAGTGCCAGATTTTTTTAAAAAAATAAAACG  795

seq1  TATTTATTTTATGTTTAGGACTGTTTTATCTCCATGTATATGTGTGCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTATGTTTAGGACTGTTTTATCTCCATGTATATGTGTGCACC  845

seq1  ATGCAGTGTGTTTAGGGGCCCGCAAAGGTCAGAAGTGTTTGTTATTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGTGTTTAGGGGCCCGCAAAGGTCAGAAGTGTTTGTTATTGGTT  895

seq1  TTTGTTTTTGAAATAGAATCTCTACAGATTGCTTATGGACTATGGAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGAAATAGAATCTCTACAGATTGCTTATGGACTATGGAATTC  945

seq1: chr6_87873163_87873935
seq2: B6Ng01-041F13.g_79_853

seq1  TATGTAGACCAGGCTGGCTGTGAGCTCACAGAGATCGAACTGTCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGACCAGGCTGGCTGTGAGCTCACAGAGATCGAACTGTCTCTGCC  50

seq1  TCTGGCCTCCTCTTCCTCAGCCTGGGTGTTGGGATTAAAGGTGTGTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTCCTCTTCCTCAGCCTGGGTGTTGGGATTAAAGGTGTGTGCCA  100

seq1  GCGTGCCCTGCAAGATTAGCAAGTCAAAATTGAAGGCTGGTTCTTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCCCTGCAAGATTAGCAAGTCAAAATTGAAGGCTGGTTCTTTGGAG  150

seq1  AGGAGTAGGTAGACAAGAAAAACAGATTAGGGTGCTCAGTCCCTGATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGTAGACAAGAAAAACAGATTAGGGTGCTCAGTCCCTGATTGA  200

seq1  CTTGGCTTTGTTTGTTTGATATAAATAAAGATTTAACTGTTTACTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTTGTTTGTTTGATATAAATAAAGATTTAACTGTTTACTCCCTA  250

seq1  GATGTTTAGTCAGCTATTTCAAAACTAAATTGAACTGAGTGCTTTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAGTCAGCTATTTCAAAACTAAATTGAACTGAGTGCTTTCCTTT  300

seq1  TCTTTCCTCCGTTTTCTCTCTACCACCAGCCTTACTATTTTTTTTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCCGTTTTCTCTCTACCACCAGCCTTACTATTTTTTTTTTCTA  350

seq1  TGTTTGGGTTTTTGAATTAAGCCTCTTCATTTATCTAGTAGTCACTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGTTTTTGAATTAAGCCTCTTCATTTATCTAGTAGTCACTCTTG  400

seq1  ATAAGCCTGGGTTTTTCTTTGTGATATATAATTCTGCATTCTTCAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTGGGTTTTTCTTTGTGATATATAATTCTGCATTCTTCAACCTG  450

seq1  TTTACATTTGCTTGGGGTCCTTCAGTGGTAGCAGACTCTCAAGCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTGCTTGGGGTCCTTCAGTGGTAGCAGACTCTCAAGCTTTAAA  500

seq1  AGGTAGAGCCATTTTCAGTTCTTCTGACATCCATTCTGTTCATTAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGCCATTTTCAGTTCTTCTGACATCCATTCTGTTCATTAGCCAC  550

seq1  ATGTTATTCCTCTTCCAAGGAAAAAAACAAAACAAAACAATAAGCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTCCTCTTCCAAGGAAAAAAACAAAACAAAACAATAAGCTCTTC  600

seq1  TATATCAAATAAGCCTCTATGGCTGGAGATCTTCTGAGTTACCATTCGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAATAAGCCTCTATGGCTGGAGATCTTCTGAGTTACCATTCGAC  650

seq1  TACTTCCCC-TTTTACACATAAGTCAGGTCCTCCAAAAGCTACTTCCTGC  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCCTTTTTACACATAAGTCAGGTCCTCCAAAAGCTACTTCCTGC  700

seq1  TCTCTTCCTTTTTC-TTTTTGAGTCAGGG-TTTCTCTGTGTAGCCCTGGC  747
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TCTCTTCCTTTTTCTTTTTTGAGTCAGGGTTTTCTCTGTGTAGCCCTGGC  750

seq1  TATCCTGGAATTTGTGCTATAGACCA  773
      ||||||| |||||||||| |||||||
seq2  TATCCTGAAATTTGTGCT-TAGACCA  775