BAC Information

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BAC

Clone NameB6Ng01-041L09
Chromosome6 (Build37)
Map Location 87,499,186 - 87,631,146
singlet/doubletdoublet
Overlap geneProkr1, 2010301N04Rik, 1810020O05Rik
Upstream geneAsprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Downstream geneAB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041L09.bB6Ng01-041L09.g
ACCDH868292DH868293
length9581,022
definitionDH868292|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L09, 5' end.DH868293|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,499,186 - 87,499,919)(87,630,132 - 87,631,146)
sequence
gaattctcacctgaggaataccgaatggcagttgaagcacctgaaaaaat
gctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctc
agaaaactggatatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaggaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctaagatacccaagatataagatacaatttcctaaacacagggacactgt
ttaaccaacaaagcagctgaatgctgaagtattcgaaaaagaccctcagt
gggaaaggaaggaaagcagaaagacactctgccaccattttatgtctgat
gagatttttcttttaatctgtttagttagaaatgcttttgtagccagaca
tagtgttgcgcgtctttaatccgaacacttggaggcagaggcaggggcat
ctcttgagtttgaggccaggctgttctacaaagcaagttccgggacagac
aggggatacacagagaaacactgcctacctgcctaggaaggggggttggg
gggaggga
gaattccacagagcttgctaagaagcagatgcttaaagagatggccaagg
tgagcgacccggcagctggctaacacactgacttactcttctgttgctgt
gaagagacaccatgaccaaggcaactctgataagaaagcatttaattggg
ggctgagggttagtcgataaccatcctggtgagaagcagacaggcatggt
gctggagcagaagctgagagcttcacctcctgatccccagggctgagcaa
atgagcaactggaagagagaaagagacacgggctggcgcgtgcttttgaa
atctccaagtccacctcccattgggacacctcctccaacaaggccacatc
tcctaattcttcccaaacagttccactccctgatgactgagcattcaaat
atatgagcctgggggaggggcattttcattcaaaccatcatacataaagc
ttttctttctctgaccaagggtgggtgaagtcaaccacttagggacagtg
gacaaaggatcgggtgagaggagaagagtgtgcctctccatgctctagag
agaaccagaggtgcccagcacattctcagacacacatggttgagaacagt
atagaagccgttcttctggggaaacactgtgttgctatggagacatctgt
cagccataagaaaaaccatttagggtttttagcacccaatacacgtagaa
aaacagatttctctgtcaaaggagacaatgatgtgaccctcacaggtctg
cctgattgagtacagagtgtcaggactttgtgtctgtatgtctctagatg
tttctgatacctgcttggtagctttggttgttactaagccctattttaat
actgtttctcacagaagtttgtcttcctcaccttctaggagccaagaaag
agattcacgtattcacagaattacctctcagctttggtgggatttcagga
cccaaaggaaaaggagaaaaaagcccagaaaaattcccgccagggctggc
tcacatccggtggtttccaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87499186_87499919
seq2: B6Ng01-041L09.b_256_991

seq1  ACTATGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTAC  50

seq1  CGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCA  100

seq1  ACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT  150

seq1  AATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGA  200

seq1  TACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAA  250

seq1  AAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAT  300

seq1  CATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACT  350

seq1  CACTGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGA  400

seq1  TACAATTTCCTAAACACAGGGACACTGTTTAACCAACAAAGCAGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTCCTAAACACAGGGACACTGTTTAACCAACAAAGCAGCTGAAT  450

seq1  GCTGAAGTATTCGAAAAAGACCCTCAGTGGGAAAGGAAGGAAAGCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTATTCGAAAAAGACCCTCAGTGGGAAAGGAAGGAAAGCAGAAA  500

seq1  GACACTCTGCCACCATTTTATGTCTGATGAGATTTTTCTTTTAATCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTGCCACCATTTTATGTCTGATGAGATTTTTCTTTTAATCTGTT  550

seq1  TAGTTAGAAATGCTTTTGTAGCCAGACATAGTGTTGCGCGTCTTTAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGAAATGCTTTTGTAGCCAGACATAGTGTTGCGCGTCTTTAATCC  600

seq1  GAACACTTGGAGGCAGAGGCAGGGGCATCTCTTGAGTTTGAGGCCAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGGAGGCAGAGGCAGGGGCATCTCTTGAGTTTGAGGCCAGGCT  650

seq1  GTTCTACAAAGCAAGTTCCGGGACAGACA-GGGATACACAGAGAAACACT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTCTACAAAGCAAGTTCCGGGACAGACAGGGGATACACAGAGAAACACT  700

seq1  GCCTACCTGCCTAGGAAGGGGGGTT-GGGGGAGGGA  734
      ||||||||||||||||||||||||| ||||||||||
seq2  GCCTACCTGCCTAGGAAGGGGGGTTGGGGGGAGGGA  736

seq1: chr6_87630132_87631146
seq2: B6Ng01-041L09.g_70_1091 (reverse)

seq1  ACTTGGAACCCACCGGCTGTGAGCCAGGCCTGGCGGGACTTCTTCTGGGC  50
      |||||||| ||||||| |||||||||| |||||||||| || ||||||||
seq2  ACTTGGAAACCACCGGATGTGAGCCAGCCCTGGCGGGAATTTTTCTGGGC  50

seq1  TTTCTTCTCCTCTTCCTTTGGGTCCTGAAAATCCACCATAGCTGAGAGGT  100
      ||| ||||||| ||||||||||||||||||  |||||| |||||||||||
seq2  TTTTTTCTCCTTTTCCTTTGGGTCCTGAAATCCCACCAAAGCTGAGAGGT  100

seq1  AATTCTGTGAATACGTGAATCTCTTTCTTGGCTCCTAGAA-GTGAGG-AG  148
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AATTCTGTGAATACGTGAATCTCTTTCTTGGCTCCTAGAAGGTGAGGAAG  150

seq1  AC-AACTTCTTGTGAG-AACAGTATT-AAATAGGGCTTAGTAACAACC-A  194
      || |||||| |||||| ||||||||| ||||||||||||||||||||| |
seq2  ACAAACTTC-TGTGAGAAACAGTATTAAAATAGGGCTTAGTAACAACCAA  199

seq1  AGCTACCAAGCAGGTATCAGAAACATCTAGAGACATACAGACACAAAGTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAAGCAGGTATCAGAAACATCTAGAGACATACAGACACAAAGTC  249

seq1  CTGACACTCTGTACTCAATCAGGCAGACCTGTGAGGGTCACATCATTGTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTCTGTACTCAATCAGGCAGACCTGTGAGGGTCACATCATTGTC  299

seq1  TCCTTTGACAGAGAAATCTG-TTTTCTACGTGTATTGGGTGCT-AAAACC  342
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TCCTTTGACAGAGAAATCTGTTTTTCTACGTGTATTGGGTGCTAAAAACC  349

seq1  CTAAATGGTTTTTCTTATGGCTGACAGATGTCTCCATAGCAACACAGTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGTTTTTCTTATGGCTGACAGATGTCTCCATAGCAACACAGTGT  399

seq1  TTCCCCAGAAGAACGGCTTCTATACTGTTCTCAACCATGTGTGTCTGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGAAGAACGGCTTCTATACTGTTCTCAACCATGTGTGTCTGAGA  449

seq1  ATGTGCTGGGCACCTCTGGTTCTCTCTAGAGCATGGAGAGGCACACTCTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGGCACCTCTGGTTCTCTCTAGAGCATGGAGAGGCACACTCTT  499

seq1  CTCCTCTCACCCGATCCTTTGTCCACTGTCCCTAAGTGGTTGACTTCACC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCACCCGATCCTTTGTCCACTGTCCCTAAGTGGTTGACTTCACC  549

seq1  CACCCTTGGTCAGAGAAAGAAAAGCTTTATGTATGATGGTTTGAATGAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGGTCAGAGAAAGAAAAGCTTTATGTATGATGGTTTGAATGAAA  599

seq1  ATGCCCCTCCCCCAGGCTCATATATTTGAATGCTCAGTCATCAGGGAGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCTCCCCCAGGCTCATATATTTGAATGCTCAGTCATCAGGGAGTG  649

seq1  GAACTGTTTGGGAAGAATTAGGAGATGTGGCCTTGTTGGAGGAGGTGTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTTGGGAAGAATTAGGAGATGTGGCCTTGTTGGAGGAGGTGTCC  699

seq1  CAATGGGAGGTGGACTTGGAGATTTCAAAAGCACGCGCCAGCCCGTGTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAGGTGGACTTGGAGATTTCAAAAGCACGCGCCAGCCCGTGTCT  749

seq1  CTTTCTCTCTTCCAGTTGCTCATTTGCTCAGCCCTGGGGATCAGGAGGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTTCCAGTTGCTCATTTGCTCAGCCCTGGGGATCAGGAGGTG  799

seq1  AAGCTCTCAGCTTCTGCTCCAGCACCATGCCTGTCTGCTTCTCACCAGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCAGCTTCTGCTCCAGCACCATGCCTGTCTGCTTCTCACCAGGA  849

seq1  TGGTTATCGACTAACCCTCAGCCCCCAATTAAATGCTTTCTTATCAGAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCGACTAACCCTCAGCCCCCAATTAAATGCTTTCTTATCAGAGT  899

seq1  TGCCTTGGTCATGGTGTCTCTTCACAGCAACAGAAGAGTAAGTCAGTGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGTCATGGTGTCTCTTCACAGCAACAGAAGAGTAAGTCAGTGTG  949

seq1  TTAGCCAGCTGCCGGGTCGCTCACCTTGGCCATCTCTTTAAGCATCTGCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGCTGCCGGGTCGCTCACCTTGGCCATCTCTTTAAGCATCTGCT  999

seq1  TCTTAGCAAGCTCTGTGGAATTC  1015
      |||||||||||||||||||||||
seq2  TCTTAGCAAGCTCTGTGGAATTC  1022