BAC Information

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BAC

Clone NameB6Ng01-041N22
Chromosome6 (Build37)
Map Location 9,371,277 - 9,372,308
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100036521, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041N22.bB6Ng01-041N22.g
ACCDH868403DH868404
length7161,033
definitionDH868403|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N22, 5' end.DH868404|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtctccaaaaagagcaacgtgcctgcttaactgctgagctatc
tctctccagaatcttcatgttttgacttttgggtatcactaatctaacca
aaaattttaaatggataaatgtaaataaagaaaatatccaccttccctaa
ttcaacaacagggccagatgcttctatatattggttaggtgcaagtatct
gcatctgactctttcagctgcttgttgggtagctcctcttttggagggct
gtcatggtaggtccctttttgtgagcactccataacttcagtaatagtgt
caggctttgggacctccccttgagctggatgccactctgggtctgttgct
ggaccttcttttcctcaggctcctctccattgccatccctctaatttttt
cagataggaattatgggtcagcgatttgactgtaggatggcaaccccatc
ccttacttaattagggaagataaaaagaagctgaggagaaaggtgatctt
gtaggaggaccagaagtctcaattaatctggaccccgagatcggccaaac
actggaccaccaaacagacagtgtacaccagctgattgaggcctccaaca
cacatacagtagaggacttctgggtctgtgttcattcagagatgatgtac
ctaaccctcaagagactggaggccccagggagtttagaggtcaggtgggg
tggtggatagggacat

gaattcaacgtctttggtttcccatggacttgcttgagctagaacatctg
tattctcagcttagactgaagctctaggctctcctgttctcatgacttct
gaaagggcctggaataaccagctgcttaatctctccagtctgtagatagc
cttatttcttattgtctatgatcatgtgagccctcttgtattatttctgt
agagagcctaaatgtgtcatcaatattatctgtcaggtaatgaaatcatt
atcttttattaaaatattgacatattattagaagtatttcagggatcaga
gagatggactaaaaggtaaaaggcacttgccagcaaacctgaaaacctgg
gttaaattgccagaatccaaatgggaagataggaagtacaggaaaggggg
ggttattttcctgttccctgagggccagctatgtgctatgacttatacgt
gtgtgtctttccctcaatacagcaaacagggggaagatctttaggaagat
aaaacagagaaattcttataacataaacataagtctacctcataaacatt
cccccaaacgtctttacagctcacagtagagagcgcaccatactgccctt
gtcttagggtagcctaggccagtgtctctttggagtcctttctttactaa
gccttgcacctgtaactttgataaataaacacatgcctgaactgtgccca
ttgactgtattccttcctcctggagaacagaaaaaagaggagctcccaca
gttctgtcgatctctctgcccttttaatgccactactaaattgtaatgcc
taaaatcccatgactaactttacttcagagtgttgcctgcacctttcttc
agaatcgtgggcagtcctatgttattttcccactggtaacaggtgcataa
gtgtagccgggactctagggattatgctccctgcaggaagtaccatacct
actgtgagtaaaactggcacaccccaagtagcctaatctctactcttgga
atagacttggaatcctgttcaggtaatctaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9371277_9372308
seq2: B6Ng01-041N22.g_66_1098

seq1  GAATTCAACGTCTTTGGTTTCCCATGGACTTGCTTGAGCTAGAACATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTCTTTGGTTTCCCATGGACTTGCTTGAGCTAGAACATCTG  50

seq1  TATTCTCAGCTTAGACTGAAGCTCTAGGCTCTCCTGTTCTCATGACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAGCTTAGACTGAAGCTCTAGGCTCTCCTGTTCTCATGACTTCT  100

seq1  GAAAGGGCCTGGAATAACCAGCTGCTTAATCTCTCCAGTCTGTAGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCCTGGAATAACCAGCTGCTTAATCTCTCCAGTCTGTAGATAGC  150

seq1  CTTATTTCTTATTGTCTATGATCATGTGAGCCCTCTTGTATTATTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTTATTGTCTATGATCATGTGAGCCCTCTTGTATTATTTCTGT  200

seq1  AGAGAGCCTAAATGTGTCATCAATATTATCTGTCAGGTAATGAAATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCTAAATGTGTCATCAATATTATCTGTCAGGTAATGAAATCATT  250

seq1  ATCTTTTATTAAAATATTGACATATTATTAGAAGTATTTCAGGGATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTAAAATATTGACATATTATTAGAAGTATTTCAGGGATCAGA  300

seq1  GAGATGGACTAAAAGGTAAAAGGCACTTGCCAGCAAACCTGAAAACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGACTAAAAGGTAAAAGGCACTTGCCAGCAAACCTGAAAACCTGG  350

seq1  GTTAAATTGCCAGAATCCAAATGGGAAGATAGGAAGTACAGGAAAGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTGCCAGAATCCAAATGGGAAGATAGGAAGTACAGGAAAGGGGG  400

seq1  GGTTATTTTCCTGTTCCCTGAGGGCCAGCTATGTGCTATGACTTATACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTCCTGTTCCCTGAGGGCCAGCTATGTGCTATGACTTATACGT  450

seq1  GTGTGTCTTTCCCTCAATACAGCAAACAGGGGGAAGATCTTTAGGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTTTCCCTCAATACAGCAAACAGGGGGAAGATCTTTAGGAAGAT  500

seq1  AAAACAGAGAAATTCTTATAACATAAACATAAGTCTACCTCATAAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGAAATTCTTATAACATAAACATAAGTCTACCTCATAAACATT  550

seq1  CCCCCAAACGTCTTTACAGCTCACAGTAGAGAGCGCACCATACTGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACGTCTTTACAGCTCACAGTAGAGAGCGCACCATACTGCCCTT  600

seq1  GTCTTAGGGTAGCCTAGGCCAGTGTCTCTTTGGAGTCCTTTCTTTACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGGTAGCCTAGGCCAGTGTCTCTTTGGAGTCCTTTCTTTACTAA  650

seq1  GCCTTGCACCTGTAACTTTGATAAATAAACACATGCCTGAACTGTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCACCTGTAACTTTGATAAATAAACACATGCCTGAACTGTGCCCA  700

seq1  TTGACTGTATTCCTTCCTCCTGGAGAACAGAAAAAAGAGGAGCTCCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGTATTCCTTCCTCCTGGAGAACAGAAAAAAGAGGAGCTCCCACA  750

seq1  GTTCTGTCGATCTCTCTGCCCTTTTAATGCCACTACTAAATTGTAATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCGATCTCTCTGCCCTTTTAATGCCACTACTAAATTGTAATGCC  800

seq1  TAAAATCCCATGACTAAC-TTACTTCAGAGTGTTGCCTGCACCTTTCTTC  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAAATCCCATGACTAACTTTACTTCAGAGTGTTGCCTGCACCTTTCTTC  850

seq1  AGAATCGTGGGCAGTCCTATGTTATTTTCCCACTGGTAACAGGTGCATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGTGGGCAGTCCTATGTTATTTTCCCACTGGTAACAGGTGCATAA  900

seq1  GTGTAGCCGGGACTCTAGGGATTATGCTCCCTGCAGGAAGTACCATACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCGGGACTCTAGGGATTATGCTCCCTGCAGGAAGTACCATACCT  950

seq1  ACTGTGAGTAAAACTGGCACACCCCAAGTAGCCTAATCTCTACTCTTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGTAAAACTGGCACACCCCAAGTAGCCTAATCTCTACTCTTGGA  1000

seq1  ATAGACTTGGATTCCTGTTCCAGTAATCTAGGC  1032
      ||||||||||| ||||||||  |||||||||||
seq2  ATAGACTTGGAATCCTGTTCAGGTAATCTAGGC  1033


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