BAC Information

Click to search

BAC

Clone NameB6Ng01-042C10
Chromosome6 (Build37)14 (Build37)
Map Location 18,836,147 - 18,836,69143,305,041 - 43,306,236
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C10.bB6Ng01-042C10.g
ACCDH868608DH868609
length1,0881,179
definitionDH868608|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C10, 5' end.DH868609|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,836,147 - 18,836,691)(43,305,041 - 43,306,236)
sequence
gaattctttttttttcccattttttattaggtatttagctcatttacatt
tccaatgctataccaaaagtcccccatacccacccacccccactccccta
cacacccactccccctttttggccctggcgttcccctgtactggggcata
taaagtttaagtgtccaaatggcctctctttccagtgatggccgattagg
ccatcttttgatacatatgcagctagagtcaagagctccggggtactggt
tagttcataatgttgttccacctatagggttgcagatccctttagctcct
tcggttctttctctagctcctccattgggagccctgttatccatccatta
gctgactgtgagcatccacttctgtgtttgctaggcccccggcatagtct
cagaagagatagctacatctgggtcctttcaataaaatcttgctagggta
tgcaatggtgtcagcgtttggatgctgattatggggtggatccctggata
tggcaatctctacatggtccatcctttcatctcagctccaaaccttgtct
ctgtaactccttccatgggagttttgttcccaattctaaggaggggcata
gtgtccacacttcagtcttcattcttcttgagtttcatgtgtttagcaaa
ttgtaccttatatcttgggaatcctaggtttggggctaatatccacttat
cagtgagtacatattgtgtgagttcctttgtgaatgtgttacctcactca
ggatgatgccctccaggtccatccatttggctaggatttcataaattcat
tctttttaatagctgagtagtactccattgtgtagatgtaccacattttc
tgtatccattcctctgttgaggggcatctgggtcctttccagcttctggc
tattataaataaggctgctatgaacatagtggagcatgtgttcttcttac
cagttggggcatcttctggataaatgccgaggagaggtatgctggatcct
cgggtagtactatgtcaattttctgaggaaccgccagactgatttccaga
gtggttgtacagccctgcatcccaccaaccatggagga
gaattctttcaaaccttcaaagaagacctaatacctattcccttcaaacc
attccacagaatagaaacaaaaagaataatacccaatgtgctctatggag
ccacagttacactgataccaaagccacacaaagacccaacgaggaaagaa
cttctgaatttcacttatggataccagtgcaaaattatacaattcacttc
tcatgatgagtttgttacatgagaccatacaaggtaactaatgtctctgt
gactgttttccttctttgaaagtgagtaatgagatcgatcatctgaggag
taaccactcctgactaacatgaatgataggactgtacagagcatgggctt
aacgttctaggtacagtgcaaataactggggcagttaacaacaaaaacca
aaggaaataatagaaatactaacaacatttttaaaaataccttctgagtg
ctgggattaaaggcatgcctctggctagttttatatgtatttataataaa
aaacaacaaaataccctattacaggtctagcagttgcagtagagggaggt
gtgtgattctgtgtgctgcttcctttccccaggtacctcaagttatcagt
cctgtaccaggtgagctggacctaagagcagcctagttgaccttcctgct
gcctggaatgattctgcaacaatccttttcttgataaaaaagagcatgta
tggagtaggccccttcttggtggttcgaaaatcctttaggccaggaaaca
accaagccactgtttatgaaaaatcaaaggaaaaatcacattggcacaat
ataggcctcattttggaagaaaacaccctcaaattctaaggcttcaataa
tccccccccccaattttgagctctgcatattggtattgtgtggctccaga
tggtagtcaaaggcagatgtcttccaataaaagacatatatgaattttca
tcttgcatctctgagggcagttgcattatagcacacattcagcacaccca
gcataagaaacagaagcctcagatgacaaagccaagggactcatcctgaa
ctatggaccataaaattgaggttacctgaactccagccatcattccttgc
cctacttctctgattagggggtactcgtgttgcttgagataagattatgg
tcaccccagactctctatgcctgaacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18836147_18836691
seq2: B6Ng01-042C10.b_593_1133 (reverse)

seq1  TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC  50
      |||||||| |||||||||| ||||||  ||||||||||||||||||||| 
seq2  TCCTCCATGGTTGGTGGGA-TGCAGGGCTGTACAACCACTCTGGAAATCA  49

seq1  GTCTGGCGGTTGCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGC  100
      ||||||||||| ||||||||||| |||||||||||||  |||||||||||
seq2  GTCTGGCGGTTCCTCAGAAAATT-GACATAGTACTACCCGAGGATCCAGC  98

seq1  ATTACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG  150
      | |||||||||| ||||| |||||||||||||||||||||||||||||| 
seq2  A-TACCTCTCCTCGGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGA  147

seq1  ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC  197

seq1  TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG  247

seq1  GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA  297

seq1  TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAA-TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG  346

seq1  GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGCTAATTGG  400
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG  396

seq1  ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAA  450
      |||||||||||||||||||||| ||||||||||||| || ||||||||||
seq2  ATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATTTGCTAA  446

seq1  ACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCC  496

seq1  TCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGA  545
      |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTTAGAATTGGGAACAAAACTCCCATGGAAGGAGTTACAGAGA  541

seq1: chr14_43305041_43306236
seq2: B6Ng01-042C10.g_68_1246

seq1  GAATTCTTTCAAACCTTCAAAGAAGACCTAATACCTATTCCCTTCAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAACCTTCAAAGAAGACCTAATACCTATTCCCTTCAAACC  50

seq1  ATTCCACAGAATAGAAACAAAAAGAATAATACCCAATGTGCTCTATGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAGAATAGAAACAAAAAGAATAATACCCAATGTGCTCTATGGAG  100

seq1  CCACAGTTACACTGATACCAAAGCCACACAAAGACCCAACGAGGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTACACTGATACCAAAGCCACACAAAGACCCAACGAGGAAAGAA  150

seq1  CTTCTGAATTTCACTTATGGATACCAGTGCAAAATTATACAATTCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAATTTCACTTATGGATACCAGTGCAAAATTATACAATTCACTTC  200

seq1  TCATGATGAGTTTGTTACATGAGACCATACAAGGTAACTAATGTCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGAGTTTGTTACATGAGACCATACAAGGTAACTAATGTCTCTGT  250

seq1  GACTGTTTTCCTTCTTTGAAAGTGAGTAATGAGATCGATCATCTGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTCCTTCTTTGAAAGTGAGTAATGAGATCGATCATCTGAGGAG  300

seq1  TAACCACTCCTGACTAACATGAATGATAGGACTGTACAGAGCATGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCCTGACTAACATGAATGATAGGACTGTACAGAGCATGGGCTT  350

seq1  AACGTTCTAGGTACAGTGCAAATAACTGGGGCAGTTAACAACAAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCTAGGTACAGTGCAAATAACTGGGGCAGTTAACAACAAAAACCA  400

seq1  AAGGAAATAATAGAAATACTAACAACATTTTTAAAAATACCTTCTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAATAGAAATACTAACAACATTTTTAAAAATACCTTCTGAGTG  450

seq1  CTGGGATTAAAGGCATGCCTCTGGCTAGTTTTATATGTATTTATAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCATGCCTCTGGCTAGTTTTATATGTATTTATAATAAA  500

seq1  AAACAACAAAATACCCTATTACAGGTCTAGCAGTTGCAGTAGAGGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAAAATACCCTATTACAGGTCTAGCAGTTGCAGTAGAGGGAGGT  550

seq1  GTGTGATTCTGTGTGCTGCTTCCTTTCCCCAGGTACCTCAAGTTATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTCTGTGTGCTGCTTCCTTTCCCCAGGTACCTCAAGTTATCAGT  600

seq1  CCTGTACCAGGTGAGCTGGACCTAAGAGCAGCCTAGTTGACCTTCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCAGGTGAGCTGGACCTAAGAGCAGCCTAGTTGACCTTCCTGCT  650

seq1  GCCTGGAATGATTCTGCAACAATCCTTTTCTTGATAAAAAAGAGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATGATTCTGCAACAATCCTTTTCTTGATAAAAAAGAGCATGTA  700

seq1  TGGAGTAGGCCCCTTCTTGGTGGTTCGAAAATCCTTTAGGCCAGGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGGCCCCTTCTTGGTGGTTCGAAAATCCTTTAGGCCAGGAAACA  750

seq1  ACCAAGCCACTGTTTATGAAAAATCAAAGGAAAAATCACATTGGCACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCACTGTTTATGAAAAATCAAAGGAAAAATCACATTGGCACAAT  800

seq1  ATAGGCCTCATTTTGGAAGAAAACACCCTCAAATTCTAAGGCTTCAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCTCATTTTGGAAGAAAACACCCTCAAATTCTAAGGCTTCAATAA  850

seq1  TCCCCCCCCCCAATTTTGAGCTCTGCATATTGGTATTGTGTGGCTCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCAATTTTGAGCTCTGCATATTGGTATTGTGTGGCTCCAGA  900

seq1  TGGTAGTCAAAGGCAGATGTCTTCCAATAAAAGACATATATGAATTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTCAAAGGCAGATGTCTTCCAATAAAAGACATATATGAATTTTCA  950

seq1  TCTTGCATCTCTGAGGGCAGGTTGCATTATAGCACACATTCAGCACACCC  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTTGCATCTCTGAGGGCA-GTTGCATTATAGCACACATTCAGCACACCC  999

seq1  AGCATAAGAACACAGAAGCCTCAGATGACAAAGCCAAAGGGACTCCATCC  1050
      |||||||||| |||||||||||||||||||||||| |||||||| |||||
seq2  AGCATAAGAA-ACAGAAGCCTCAGATGACAAAGCC-AAGGGACT-CATCC  1046

seq1  TGAACTTATGGACCCATTAAAATTGAGGTTTAACCTGAACTCAGGCCATT  1100
      ||||| ||||||||   |||||||||||||  ||||||||||  ||||| 
seq2  TGAAC-TATGGACC--ATAAAATTGAGGTT--ACCTGAACTCCAGCCAT-  1090

seq1  CCATTCCCTGCCCTACCTC-CTGAGTAGGGAGTAACTCGTGTTTGCTATG  1149
       |||||| |||||||| || |||| ||||| || ||||||| ||||| ||
seq2  -CATTCCTTGCCCTACTTCTCTGATTAGGGGGT-ACTCGTG-TTGCT-TG  1136

seq1  AGTAAAGTATTATGGTACAACCCCCAGCATCCTCATGCCTGAACTTG  1196
      ||  ||| |||||||| ||  ||||||  ||   |||||||||||||
seq2  AGATAAG-ATTATGGT-CA--CCCCAGACTCTCTATGCCTGAACTTG  1179