BAC Information

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BAC

Clone NameB6Ng01-042J22
Chromosome6 (Build37)
Map Location 80,660,851 - 80,724,991
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043392, Lrrtm4, LOC100043390
Downstream geneLOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J22.bB6Ng01-042J22.g
ACCDH868936DH868937
length1,1841,105
definitionDH868936|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J22, 5' end.DH868937|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,723,801 - 80,724,991)(80,660,851 - 80,661,966)
sequence
gaattccacctccatattttgtaccaacctcctgctgactacccatctcc
tctctagaataattatcttcctctctcaggcaaagtattcggcaaagtgc
agctcaaacagcatgactgatgtcagtctccctaggaggcctcagcctta
ctggagaaaggcattcagttgaatattgagatgatttctcaggtccaatg
gcatactattttataaaaggatttcaattatttagttcagtaagaacatg
aagtattagtttataatacccttgcttgttcatgctgctccttattcatc
tttgaatatcagtcacaatcatggcaaaactctctgatttgtgggaaaaa
ctgctgacttgggagaaccatattctactatattctaggtcttttggttt
atgggtaacggttctgaaggggtgaaagtcacaaggaacaaatatgtgat
cttctacaccttcttctttctcgtttttcagtaggcagataatggagata
ctttcactttggggtgatcctaattttcacctcttcattgttagtttcta
tctgtctcacttagagacagaatatatgaccaggaagttcaagggttctt
ctgcctggatgaacagttagagacatgtgtcctgggctagctctgatgga
caaagtctttcttgcttattctttctccttgatgcattgttttatctcat
ttgaagttcttttttcttccctatgatactttggcttcctcttataagct
taaaagtttaaaaaacaaaacaaacaaacaaacaaaaaaaaaaaaccaaa
cactccccaatcagccaaccaaccaaaaaacagttttctagtgttagtga
agagtataccttagggctggatttcttcaacttctgttctagggttagac
cttgaaggcgagttatcataaagtcatcatgattttttttctttcattca
atataaaaccatcatgtctactctgcagtatcatcctggtttgttctatt
atgggcatgctttgctgactctgacaaaaactattaggagcttctcatcc
cttcagtggtgcagaaacacctccctactgtctactgcattttctcagca
gcgctggagaggcatcattctatttagagaaatgagttcttagattcatc
taattcattaagatgaatttgaaacattgaagtg
gaattcagcagacctgagaacacagtgccatacaaattaaagctgaaagt
aaccaaaccaacacgttcaggaagaagtggagacttccatgtctctcaga
attaagtggcatcctatcagagagaggttaaaaaaatcagttgctaaagt
gcagaaagaccttggatgattgtaactgtaaaccacctgtggcttacatg
aacctggtactcctgaaaggcaggctggggctgaaagagactagacagct
agaaaagaatgaggccaagacaaatttttctctgatcaaggccgcaaagt
ttactaagagtctgtgcttataaagggggaaggcccatctcctttccccc
catccccccacccccacctccccaccaatctattcttggtgcctggagcc
agcctgtaggctacttgcaggataggatgtgtctccagaatgtctcaagg
gtctctcaacaggtagcagagtctcagtagtgcagcagtagttgacataa
caatatagccatctaagtcagaaggctacaccccaggtgatctcatattc
agtggtagcaaagtctgaatcatcctgcttcaaggctgggggaggctaca
actgaagttaaaaaagaaaaccagagacactaaaacttatagaggagaaa
gtggggaaacgcctcaaagatatgggcacaggggaaaaattcctaaacag
aatagcaatggcttgtgctgtaagatcgagaatcaacaaacgggacctca
taaaattgcaaagtttctgtaaggcaaaagacactgtcaataagacaaaa
agaccatcaacagattgggaaaggaactttacctatattaaatcagataa
gggactaatatccaatatatacaaagaactcaagaagatgggctccagaa
aatcaaataaccccattaaaatggggtacagagctaaacaaagaattctc
aactaatgaatatcgaatgctgagaagcacctgaaaaaaatgttccatat
cttaatcagaaatgcaaatcaaaacaccctgagattctacttcacaccat
tcagaatggctaagaatcaaaaatcgaatgacgcagatgctagcagatgt
gtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80723801_80724991
seq2: B6Ng01-042J22.b_42_1225 (reverse)

seq1  CACTTCCATTGTTTCAAAT--CTACTAATGAATGTAGATTTGATCTAAGA  48
      ||||| || ||||||||||   |  |||||||| |||| |  ||||||||
seq2  CACTT-CAATGTTTCAAATTCATCTTAATGAAT-TAGA-TGAATCTAAGA  47

seq1  ACTTCATTTCTCTAAATAG-ATGATGCCTCT-CAGCGCTGCTGAGATAAT  96
      || |||||||||||||||| ||||||||||| |||||||||||||| |||
seq2  AC-TCATTTCTCTAAATAGAATGATGCCTCTCCAGCGCTGCTGAGAAAAT  96

seq1  GGCAGTAGACAGTGGGGAGGTG-TTCTGCACCACTGAAGGGATGAG-AGC  144
       |||||||||||| |||||||| ||||||||||||||||||||||| |||
seq2  -GCAGTAGACAGTAGGGAGGTGTTTCTGCACCACTGAAGGGATGAGAAGC  145

seq1  TCCTAATAAGTCTTTGTTCAGAGTCAGCAAAGCAATGCCCATTAATAGAA  194
      ||||||| ||| |||| |||||||||||||||| ||||||| |||||| |
seq2  TCCTAAT-AGTTTTTG-TCAGAGTCAGCAAAGC-ATGCCCA-TAATAG-A  190

seq1  ACAAACCAGGATGATACTGCAGAGTAGACATGATGGTTTTATATTTTGAA  244
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  ACAAACCAGGATGATACTGCAGAGTAGACATGATGGTTTTATA--TTGAA  238

seq1  TGAAAGAAAAAAAATCATGATGACCTTTATGATAACTCGCCTTCAAGGTC  294
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAAAGAAAAAAAATCATGATGA-CTTTATGATAACTCGCCTTCAAGGTC  287

seq1  TAACCCTAGAACAGAAGTTGAAGAAATCCAGCCCTAAGGTATACTCTTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTAGAACAGAAGTTGAAGAAATCCAGCCCTAAGGTATACTCTTCA  337

seq1  CTAACACTAGAAAACTGTTTTTTGGTTGGTTGGCTGATTGGGGAGTGTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTAGAAAACTGTTTTTTGGTTGGTTGGCTGATTGGGGAGTGTTT  387

seq1  GGTTTTTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTTTAAACTTTTAAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTTTAAACTTTTAAGC  437

seq1  TTATAAGAGGAAGCCAAAGTATCATAGGGAAGAAAAAAGAACTTCAAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAGGAAGCCAAAGTATCATAGGGAAGAAAAAAGAACTTCAAATG  487

seq1  AGATAAAACAATGCATCAAGGAGAAAGAATAAGCAAGAAAGACTTTGTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACAATGCATCAAGGAGAAAGAATAAGCAAGAAAGACTTTGTCC  537

seq1  ATCAGAGCTAGCCCAGGACACATGTCTCTAACTGTTCATCCAGGCAGAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCTAGCCCAGGACACATGTCTCTAACTGTTCATCCAGGCAGAAG  587

seq1  AACCCTTGAACTTCCTGGTCATATATTCTGTCTCTAAGTGAGACAGATAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGAACTTCCTGGTCATATATTCTGTCTCTAAGTGAGACAGATAG  637

seq1  AAACTAACAATGAAGAGGTGAAAATTAGGATCACCCCAAAGTGAAAGTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACAATGAAGAGGTGAAAATTAGGATCACCCCAAAGTGAAAGTAT  687

seq1  CTCCATTATCTGCCTACTGAAAAACGAGAAAGAAGAAGGTGTAGAAGATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTATCTGCCTACTGAAAAACGAGAAAGAAGAAGGTGTAGAAGATC  737

seq1  ACATATTTGTTCCTTGTGACTTTCACCCCTTCAGAACCGTTACCCATAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGTTCCTTGTGACTTTCACCCCTTCAGAACCGTTACCCATAAA  787

seq1  CCAAAAGACCTAGAATATAGTAGAATATGGTTCTCCCAAGTCAGCAGTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGACCTAGAATATAGTAGAATATGGTTCTCCCAAGTCAGCAGTTT  837

seq1  TTCCCACAAATCAGAGAGTTTTGCCATGATTGTGACTGATATTCAAAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAAATCAGAGAGTTTTGCCATGATTGTGACTGATATTCAAAGAT  887

seq1  GAATAAGGAGCAGCATGAACAAGCAAGGGTATTATAAACTAATACTTCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGAGCAGCATGAACAAGCAAGGGTATTATAAACTAATACTTCAT  937

seq1  GTTCTTACTGAACTAAATAATTGAAATCCTTTTATAAAATAGTATGCCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACTGAACTAAATAATTGAAATCCTTTTATAAAATAGTATGCCAT  987

seq1  TGGACCTGAGAAATCATCTCAATATTCAACTGAATGCCTTTCTCCAGTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGAGAAATCATCTCAATATTCAACTGAATGCCTTTCTCCAGTAA  1037

seq1  GGCTGAGGCCTCCTAGGGAGACTGACATCAGTCATGCTGTTTGAGCTGCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGCCTCCTAGGGAGACTGACATCAGTCATGCTGTTTGAGCTGCA  1087

seq1  CTTTGCCGAATACTTTGCCTGAGAGAGGAAGATAATTATTCTAGAGAGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCGAATACTTTGCCTGAGAGAGGAAGATAATTATTCTAGAGAGGA  1137

seq1  GATGGGTAGTCAGCAGGAGGTTGGTACAAAATATGGAGGTGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTAGTCAGCAGGAGGTTGGTACAAAATATGGAGGTGGAATTC  1184

seq1: chr6_80660851_80661966
seq2: B6Ng01-042J22.g_65_1169

seq1  GAATTCAGCAGACCTGAGAACACAGTGCCATACAAATTAAAGCTGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGACCTGAGAACACAGTGCCATACAAATTAAAGCTGAAAGT  50

seq1  AACCAAACCAACACGTTCAGGAAGAAGTGGAGACTTCCATGTCTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAACACGTTCAGGAAGAAGTGGAGACTTCCATGTCTCTCAGA  100

seq1  ATTAAGTGGCATCCTATCAGAGAGAGGTTAAAAAAATCAGTTGCTAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGGCATCCTATCAGAGAGAGGTTAAAAAAATCAGTTGCTAAAGT  150

seq1  GCAGAAAGACCTTGGATGATTGTAACTGTAAACCACCTGTGGCTTACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGACCTTGGATGATTGTAACTGTAAACCACCTGTGGCTTACATG  200

seq1  AACCTGGTACTCCTGAAAGGCAGGCTGGGGCTGAAAGAGACTAGACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTACTCCTGAAAGGCAGGCTGGGGCTGAAAGAGACTAGACAGCT  250

seq1  AGAAAAGAATGAGGCCAAGACAAATTTTTCTCTGATCAAGGCCGCAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATGAGGCCAAGACAAATTTTTCTCTGATCAAGGCCGCAAAGT  300

seq1  TTACTAAGAGTCTGTGCTTATAAAGGGGGAAGGCCCATCTCCTTTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGAGTCTGTGCTTATAAAGGGGGAAGGCCCATCTCCTTTCCCCC  350

seq1  CATCCCCCCACCCCCACCTCCCCACCAATCTATTCTTGGTGCCTGGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCCACCCCCACCTCCCCACCAATCTATTCTTGGTGCCTGGAGCC  400

seq1  AGCCTGTAGGCTACTTGCAGGATAGGATGTGTCTCCAGAATGTCTCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAGGCTACTTGCAGGATAGGATGTGTCTCCAGAATGTCTCAAGG  450

seq1  GTCTCTCAACAGGTAGCAGAGTCTCAGTAGTGCAGCAGTAGTTGACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCAACAGGTAGCAGAGTCTCAGTAGTGCAGCAGTAGTTGACATAA  500

seq1  CAATATAGCCATCTAAGTCAGAAGGCTACACCCCAGGTGATCTCATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAGCCATCTAAGTCAGAAGGCTACACCCCAGGTGATCTCATATTC  550

seq1  AGTGGTAGCAAAGTCTGAATCATCCTGCTTCAAGGCTGGGGGAGGCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGCAAAGTCTGAATCATCCTGCTTCAAGGCTGGGGGAGGCTACA  600

seq1  ACTGAAGTTAAAAAAGAAAACCAGAGACACTAAAACTTATAGAGGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTTAAAAAAGAAAACCAGAGACACTAAAACTTATAGAGGAGAAA  650

seq1  GTGGGGAAACGCCTCAAAGATATGGGCACAGGGGAAAAATTCCTAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAACGCCTCAAAGATATGGGCACAGGGGAAAAATTCCTAAACAG  700

seq1  AATAGCAATGGCTTGTGCTGTAAGATCGAGAATCAACAAACGGGACCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATGGCTTGTGCTGTAAGATCGAGAATCAACAAACGGGACCTCA  750

seq1  TAAAATTGCAAAGTTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCAAAGTTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAA  800

seq1  AGACCATCAACAGATTGGGAAAGGAACTTTACCTATATTAAATCAGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATCAACAGATTGGGAAAGGAACTTTACCTATATTAAATCAGATAA  850

seq1  GGGACTAATATCCAATATATACAAAGAACTCAAGAAGATGGGCTCCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAATATCCAATATATACAAAGAACTCAAGAAGATGGGCTCCAGAA  900

seq1  AATCAAATAACCCCATTAAAAATGGGGTACAGAGCTAAACAAAGAATTCT  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCAAATAACCCCATT-AAAATGGGGTACAGAGCTAAACAAAGAATTCT  949

seq1  CAACTAATGAATATCGAATGGCTGAGAAGCACCTGAAAAAAAATGTTCAA  1000
      ||||||||||||||||||| ||||||||||||||| |||||||||||| |
seq2  CAACTAATGAATATCGAAT-GCTGAGAAGCACCTG-AAAAAAATGTTCCA  997

seq1  TATCCTTAATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTC  1050
      ||| ||||||||  ||||||||||||||||| ||||||||||||||| ||
seq2  TAT-CTTAATCA--GAAATGCAAATCAAAAC-ACCCTGAGATTCTACTTC  1043

seq1  ACACCATTCAGAATGGCTAAG-ATCAAAAATTCAGATGACAGCAGATGCT  1099
      ||||||||||||||||||||| |||||||| ||  ||||| |||||||||
seq2  ACACCATTCAGAATGGCTAAGAATCAAAAA-TCGAATGAC-GCAGATGCT  1091

seq1  AGCAAGGATGTGGTGAA  1116
      ||||  ||||| |||||
seq2  AGCA--GATGT-GTGAA  1105