BAC Information

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BAC

Clone NameB6Ng01-042L14
Chromosome6 (Build37)17 (Build37)
Map Location 18,835,453 - 18,835,96855,834,426 - 55,835,613
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L14.bB6Ng01-042L14.g
ACCDH869008DH869009
length9861,165
definitionDH869008|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L14, 5' end.DH869009|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,453 - 18,835,968)(55,834,426 - 55,835,613)
sequence
gaattctttgttcagttctgaagccccattttttaatggggttgtttgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttc
attaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttctttg
atccatttagatttgaccttagtacaaggagataagtatggatcgattcg
cattcttctacatgataacaaccagttgtgccagcaccaattgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtctctataccagtaccatgcagtttttaccacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatttgcaaattgctccttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatattgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagacttgaagtttttatcat
acagatctttcacttccttagttagagtcacgccgagatattttatatat
ttgtgactattgagaaggtgttgttccctaattctt
gaattccaaaggaggaaaaaacaaaggggaaataggaggcagttgttgaa
aagcacagagtcaaggaaagaagggaactcgctccgtgcagagctcctgc
accaatggtgtttttatagtgaatgtgttctgcttgccagaaaagcataa
aaataaaaagcaagaattatgtgctgcctacaaagagtactttgaatatg
aagatacaaattagagctaaaactataggaaatgaattagcaagcaataa
gacaatgaaataatgatattatcagacataaagtactaccagagatttgc
aagaaaaagggagcattttatttgtactagagctagttcattaaaaaaaa
tactagcaccacatatttgatagttgttcatttcataaaggagccttcgg
actcaatgcagcaaaagttgtttggacgtggtccagtatgctcggtccta
aggatgagttagcctctgctacatctgcttgctttccacgttcatgaatt
ctagatgtaactataccacataagtaactgtcataacatactttatttaa
aatcatactttaataaattaaacatataagtgtaagaatgcaagtttggt
agaatcagggtaactattaaaaagtaaattttagttttttagaatttgca
gccttatgtaacctgatccagtatcagttggttgtattgtttcatgagtt
aattcaataaggaataataaacaaactcttttttttttttttaaagattt
atttattataagtacactgtagctgtcttcaaacacaccagaagagggcg
tcagatctcattacgggtggttgtgagccaccatgtggttgctgggaatt
gaactcaggaccttcgggaaagcagtcagttctcttacccactgagccat
ctcaccagctcataaacaaactctttacatctgaagtttttggtttctaa
agttatatcagctgatatgatttccattttgtctcacattctagatccag
catataaaatgagcttcaggcatcagcagtttgtttgcatctttgacatt
tgatgcaccttaagggcctctatcaactgcgtacttagcagagaatttac
ctcactgcctcagaactcacgatatgtgaagctggcactggctccacaca
catcagactcttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835453_18835968
seq2: B6Ng01-042L14.b_40_557 (reverse)

seq1  CCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  50

seq1  AGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTG  100

seq1  TTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTAA  150
      ||||| |||||||||||| |||||||||||||||||||||| ||||||||
seq2  TTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAA  150

seq1  GGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  200
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACCAGAGACACTGA  200

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGG  250

seq1  GAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAAT  299
      ||||| ||||||||||||||||||||||| |||||||| || | ||||||
seq2  GAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAAT  300

seq1  CGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACA  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACA  350

seq1  CCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACC  399
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAAGGATCTTTACC  400

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAA  450

seq1  GAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGC-TCA  498
      |||||||||||||||||||||||| ||||||||||| ||||||||| |||
seq2  GAAGGTGGACTTCAGAAAATCAAACAACCCCATTAAAAAATGGGGCTTCA  500

seq1  GAACTGAACAAAGAATTC  516
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr17_55834426_55835613
seq2: B6Ng01-042L14.g_67_1231 (reverse)

seq1  TGGAAGAAGCTGAAATGTGTGTGGATGCCCACGTTCGCAAGGCTTCTACC  50
      |||||||  |||  ||||||||||| |||   ||  || | |||||   |
seq2  TGGAAGAGTCTG--ATGTGTGTGGA-GCC--AGT--GCCA-GCTTC--AC  40

seq1  ATACTGT-AGTCCTGA-GCAGTGAAGTTAAATCTCTTGCTTAAAGTACGC  98
      |||  || ||| |||| ||||||| || || |||| ||||  ||||||||
seq2  ATATCGTGAGTTCTGAGGCAGTGAGGTAAATTCTC-TGCT--AAGTACGC  87

seq1  AGTATGATAGGAGCCCCTAAGGTGCCATCAAATGTCAAAGATGCAAAACC  148
      ||| ||||||  |||| ||||||| ||||||||||||||||||||||  |
seq2  AGT-TGATAGAGGCCCTTAAGGTG-CATCAAATGTCAAAGATGCAAA--C  133

seq1  AAACTTGCTGATTGCCTGAAGCTCATTTTTATATGCTTGGATCTAAGAAT  198
      |||| |||||| ||||||||||||| |||||||||| ||||||| |||||
seq2  AAAC-TGCTGA-TGCCTGAAGCTCA-TTTTATATGC-TGGATCT-AGAAT  178

seq1  GTGAGACAAAATGGAAATCAATATCAGCTGATATAAACTTTAGAAACCAA  248
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  GTGAGACAAAATGGAAATC-ATATCAGCTGATAT-AACTTTAGAAACCAA  226

seq1  AAACTTCAGATGTTAAAGAGTTTGTTTATGGGCTGGTGAGATGGCTCAGT  298
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  AAACTTCAGATG-TAAAGAGTTTGTTTATGAGCTGGTGAGATGGCTCAGT  275

seq1  GGGTAAGAGAACTGACTGCTTTCCCGAAGGTCCTGAGTTCAATTCCCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGAGAACTGACTGCTTTCCCGAAGGTCCTGAGTTCAATTCCCAGC  325

seq1  AACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTC  375

seq1  TGGTGTGTTTGAAGACAGCTACAGTGTACTTATAATAAATAAATCTTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTTTGAAGACAGCTACAGTGTACTTATAATAAATAAATCTTTAA  425

seq1  AAAAAAAAAAAAGAGTTTGTTTATTATTCCTTATTGAATTAACTCATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAGTTTGTTTATTATTCCTTATTGAATTAACTCATGAA  475

seq1  ACAATACAACCAACTGATACTGGATCAGGTTACATAAGGCTGCAAATTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAACCAACTGATACTGGATCAGGTTACATAAGGCTGCAAATTCT  525

seq1  AAAAAACTAAAATTTACTTTTTAATAGTTACCCTGATTCTACCAAACTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTAAAATTTACTTTTTAATAGTTACCCTGATTCTACCAAACTTG  575

seq1  CATTCTTACACTTATATGTTTAATTTATTAAAGTATGATTTTAAATAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACACTTATATGTTTAATTTATTAAAGTATGATTTTAAATAAAG  625

seq1  TATGTTATGACAGTTACTTATGTGGTATAGTTACATCTAGAATTCATGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATGACAGTTACTTATGTGGTATAGTTACATCTAGAATTCATGAA  675

seq1  CGTGGAAAGCAAGCAGATGTAGCAGAGGCTAACTCATCCTTAGGACCGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAAGCAAGCAGATGTAGCAGAGGCTAACTCATCCTTAGGACCGAG  725

seq1  CATACTGGACCACGTCCAAACAACTTTTGCTGCATTGAGTCCGAAGGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGACCACGTCCAAACAACTTTTGCTGCATTGAGTCCGAAGGCTC  775

seq1  CTTTATGAAATGAACAACTATCAAATATGTGGTGCTAGTATTTTTTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAAATGAACAACTATCAAATATGTGGTGCTAGTATTTTTTTTAA  825

seq1  TGAACTAGCTCTAGTACAAATAAAATGCTCCCTTTTTCTTGCAAATCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGCTCTAGTACAAATAAAATGCTCCCTTTTTCTTGCAAATCTCT  875

seq1  GGTAGTACTTTATGTCTGATAATATCATTATTTCATTGTCTTATTGCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTACTTTATGTCTGATAATATCATTATTTCATTGTCTTATTGCTTG  925

seq1  CTAATTCATTTCCTATAGTTTTAGCTCTAATTTGTATCTTCATATTCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCATTTCCTATAGTTTTAGCTCTAATTTGTATCTTCATATTCAAA  975

seq1  GTACTCTTTGTAGGCAGCACATAATTCTTGCTTTTTATTTTTATGCTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTTGTAGGCAGCACATAATTCTTGCTTTTTATTTTTATGCTTTT  1025

seq1  CTGGCAAGCAGAACACATTCACTATAAAAACACCATTGGTGCAGGAGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGCAGAACACATTCACTATAAAAACACCATTGGTGCAGGAGCTC  1075

seq1  TGCACGGAGCGAGTTCCCTTCTTTCCTTGACTCTGTGCTTTTCAACAACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGAGCGAGTTCCCTTCTTTCCTTGACTCTGTGCTTTTCAACAACT  1125

seq1  GCCTCCTATTTCCCCTTTGTTTTTTCCTCCTTTGGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTATTTCCCCTTTGTTTTTTCCTCCTTTGGAATTC  1165