BAC Information

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BAC

Clone NameB6Ng01-042N02
Chromosome6 (Build37)X (Build37)
Map Location 18,835,427 - 18,835,968152,853,326 - 152,854,485
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042N02.bB6Ng01-042N02.g
ACCDH869074DH869075
length9511,143
definitionDH869074|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N02, 5' end.DH869075|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(152,853,326 - 152,854,485)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcga
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagcgcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgt
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccatcagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagctctttcacttccttagttagagtcactccgagatatttcatattat
t
gaattccagagtggaattctaggcattctagaaccattactggggcatgg
gctggaaactgttgctggagaagtctggaaactgcttcttgcagttggcc
ttgcctcaggccaggtggtggggcagcttctgatggaaggtcagtttctg
actagttacctgaagcctgggtattttggttttctttttgtttcttttct
aataactgacttccctgggcttgcctggactttcccagttcttaggccta
gtcttataaatctgtcatggagtcaacctagccttctcaaaatgagaatg
aaaaatataacatacccaaatctacaattaagagcactctaaaaggcaag
ttcacagcactaaatgtttatattaaaaataaaataaaataaaggaagaa
agttcatatttgtaacttagcagcactcctaaaagctcttgaaaaaaaag
aagaaataacattcaaaaggagaaggtggcaaaaaaaattaaactcagac
acaaaatcaatgaaatagaaacatcaacatcagcaaaaacaatacaaata
atgaaacaaagaaataaagaaccgattgagaaaaatcagtaagattgata
aaccatgagcttttttaactaaatgacaaagtgaaaacttcaaattaata
aaattatggataaaaatggggtatcactaccaagaattagcctcagcttg
gagaggtggtcctaagaaggggtgtttgggataagtaaaagaaatgactc
gaggtcaattgtgggtcaatctgtagtctgagatggctcaagagagctct
ctgctagagacagctccctacttgagacaactttctgaccaaagttagaa
aagctgctagaaaaaattcttgggtttctgtccaaaaacttattaggaaa
aattctaaggttgctgacctaagtcagaaaagctgctagaaaaattctta
ggttttctgatgaaagtcaggaaaactgctagacaaaatcttgggtttga
ccaaagtcaaacagttcacttggagaaattctaaaaataactgcaatagt
ctctgctagcttatcttctgcaacaaagtcagtcttttatacaattcagt
catcattatctaaggttcccttggatatcatggaatcagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-042N02.b_40_582 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGCGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      |||| |||||||||||||||||||||||||| |||||||||||  |||||
seq2  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATTCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| |||||||||||||||||||| |||||||| ||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAATGGATCAAAGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| |||||||| || | |||||| |||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAGAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chrX_152853326_152854485
seq2: B6Ng01-042N02.g_66_1208

seq1  GAATTCCAGAGTGGAATTCTAGGCATTCTAGAACCATTACTGGGGCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTGGAATTCTAGGCATTCTAGAACCATTACTGGGGCATGG  50

seq1  GCTGGAAACTGTTGCTGGAGAAGTCTGGAAACTGCTTCTTGCAGTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACTGTTGCTGGAGAAGTCTGGAAACTGCTTCTTGCAGTTGGCC  100

seq1  TTGCCTCAGGCCAGGTGGTGGGGCAGCTTCTGATGGAAGGTCAGTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCAGGCCAGGTGGTGGGGCAGCTTCTGATGGAAGGTCAGTTTCTG  150

seq1  ACTAGTTACCTGAAGCCTGGGTATTTTGGTTTTCTTTTTGTTTCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTACCTGAAGCCTGGGTATTTTGGTTTTCTTTTTGTTTCTTTTCT  200

seq1  AATAACTGACTTCCCTGGGCTTGCCTGGACTTTCCCAGTTCTTAGGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGACTTCCCTGGGCTTGCCTGGACTTTCCCAGTTCTTAGGCCTA  250

seq1  GTCTTATAAATCTGTCATGGAGTCAACCTAGCCTTCTCAAAATGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAAATCTGTCATGGAGTCAACCTAGCCTTCTCAAAATGAGAATG  300

seq1  AAAAATATAACATACCCAAATCTACAATTAAGAGCACTCTAAAAGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAACATACCCAAATCTACAATTAAGAGCACTCTAAAAGGCAAG  350

seq1  TTCACAGCACTAAATGTTTATATTAAAAATAAAATAAAATAAAGGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCACTAAATGTTTATATTAAAAATAAAATAAAATAAAGGAAGAA  400

seq1  AGTTCATATTTGTAACTTAGCAGCACTCCTAAAAGCTCTTGAAAAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATATTTGTAACTTAGCAGCACTCCTAAAAGCTCTTGAAAAAAAAG  450

seq1  AAGAAATAACATTCAAAAGGAGAAGGTGGCAAAAAAAATTAAACTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAACATTCAAAAGGAGAAGGTGGCAAAAAAAATTAAACTCAGAC  500

seq1  ACAAAATCAATGAAATAGAAACATCAACATCAGCAAAAACAATACAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAATGAAATAGAAACATCAACATCAGCAAAAACAATACAAATA  550

seq1  ATGAAACAAAGAAATAAAGAACCGATTGAGAAAAATCAGTAAGATTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAAAGAAATAAAGAACCGATTGAGAAAAATCAGTAAGATTGATA  600

seq1  AACCATGAGCTTTTTTAACTAAATGACAAAGTGAAAACTTCAAATTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGCTTTTTTAACTAAATGACAAAGTGAAAACTTCAAATTAATA  650

seq1  AAATTATGGATAAAAATGGGGTATCACTACCAAGAATTAGCCTCAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGGATAAAAATGGGGTATCACTACCAAGAATTAGCCTCAGCTTG  700

seq1  GAGAGGTGGTCCTAAGAAAGGGGTGTTTGGGATAAGTAAAAGAAATGACT  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGTCCTAAG-AAGGGGTGTTTGGGATAAGTAAAAGAAATGACT  749

seq1  CGAGGTCAATTGTGGGTCAATCTGTAGTCTGAGATGGCTCAAGAGAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTCAATTGTGGGTCAATCTGTAGTCTGAGATGGCTCAAGAGAGCTC  799

seq1  TCTGCTAGAGACAGCTCCCTACTTGAGACAACTTTCTGACCAAAGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGAGACAGCTCCCTACTTGAGACAACTTTCTGACCAAAGTTAGA  849

seq1  AAAGCTGCTAGAAAAAAATTCTTGGGTTTTCTGTCCAAAAACTTATTAGG  900
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  AAAGCTGCTAG-AAAAAATTCTTGGG-TTTCTGTCCAAAAACTTATTAGG  897

seq1  AAAAAATTCTTAGGTTTGCTGACCTAAGTCAGAAAAGCTGCTAGAAAAAT  950
       ||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  -AAAAATTCTAAGG-TTGCTGACCTAAGTCAGAAAAGCTGCTAGAAAAAT  945

seq1  TCTTAGGTTTTCTGATGAAAGTCAGGAAAACTGCTAGACAAAATTCTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTAGGTTTTCTGATGAAAGTCAGGAAAACTGCTAGACAAAA-TCTTGG  994

seq1  GTTTTGACCAAAGTCAAACAGTTCAC-TGGAGAAATTCTTAAAAATAACT  1049
      | |||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  G-TTTGACCAAAGTCAAACAGTTCACTTGGAGAAATTC-TAAAAATAACT  1042

seq1  GCAATAGTTCTCTGCTAGCTTATCTTCTGCAACAAAAGTCCAGTCTTTTA  1099
      ||||||| ||||||||||||||||||||||||| ||||| ||||||||||
seq2  GCAATAG-TCTCTGCTAGCTTATCTTCTGCAAC-AAAGT-CAGTCTTTTA  1089

seq1  TTTACATATCAATTCAATCAT--TTATCT-AGGTTCCCTTTTGATTATTC  1146
      |        ||||||| ||||  |||||| ||||||||  |||  |||  
seq2  T-------ACAATTCAGTCATCATTATCTAAGGTTCCC--TTGGATAT--  1128

seq1  CAT-GAATCAGCACT  1160
      ||| |||||||||||
seq2  CATGGAATCAGCACT  1143