BAC Information

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BAC

Clone NameB6Ng01-043C02
Chromosome6 (Build37)
Map Location 149,091,621 - 149,210,718
singlet/doubletdoublet
Overlap gene4833442J19Rik, C730024G19Rik
Upstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik
Downstream gene2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043C02.bB6Ng01-043C02.g
ACCDH869288DH869289
length9241,102
definitionDH869288|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C02, 5' end.DH869289|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,091,621 - 149,092,535)(149,209,608 - 149,210,718)
sequence
gaattccattgcagcctgggctatggtataagtctatattttatttgatg
gatatgctttgcctgcatgtgtataaacacactgtgtgtggtgtgtgtgt
gtgtctgctgcctgaaaaaagccagaggagggcaccagatcccctggaac
tgaagttatgattgtgagctgcgtgtggatgctaggaaccgaacctgggt
ccactgcaagagcatcaggtgctctttaactgctgagccatttctttaca
tgcaaggctatcctaagaccaaaacaaacaaaaagatataccttatttca
tttcatgaacattgttataaaaatagtatgcctgtatatttgtgattatg
aattactgaaaggatttcacaggaaaaaaaaaagtgggcctggagagatg
gctcagcggttaggagcactcactgctcttccagaggtcctgagttcaat
tcccagcaaccacatggtgactcacaaccatctgtaataggatctgatac
cctctaatggtatatctgaagacagtaacagtactcacatacataaaata
aatacatcttaaaaaaaaaaaaaagccaggcagtggtggtgcctgccttt
aatcccagcacttgggaggcagaggcaggtggatttctgagtttgaggcc
agcctggtctccagagtgagttccaggacagccaggggctatacagagaa
accctgtctctaaaaaaaaaaaaaaaaaagaaaaagaaaaaaaaaaaaaa
aaaaaaggagtattttgattttttttgcccaaactggaaagccaaagctg
ccccctgacatgaatttgccccttacttcctgagttgttaagggcaatta
ttatgggggctagctaatttttcttggtatggggaaggatatgggacttg
ttgggctagacttagaaaatttca
gaattcctgactgcctcagttgcttgatgtgtttgttaattcctggccca
tggggcattgtttaacccacactggtattgcagaacttaataactgaact
acaatgggcgccagtgtgctatcaagcctagtggatttccttctgctcaa
atatcaggtaccttgagttatgtagatagcgcttccttcctagtggcaga
gttctcatataagagagactcctggaatagagaataggtgatcagaatgc
tcacaggggtttggcctgagtctagagttagataagccaagttttcctca
aaagagatgatggctctgagtttttgtaacaagtccctctcagtcagtgg
gtatagaaaataatctggcataatcagaagagagtgagttatagtctcct
acaggctcagagatatccatgggaaatagagtgtttggcctatagctctt
tggatcactattttcttggaggtgaggagtctaagtagttctttcaagac
agagtgagctgacccagtgtctatcaggaagttgacaggttccccccatc
cttatggtcatcctggattcccagggactaagtcatattgctaagttata
tatagttactaaatatatatatatatataactcccctgtccccttcaatt
tagttggagaatgggacagcttcccttttttttttttttttttttctttc
agctagtgctttccttcttcctgtggcccttctgcttaaaataggcacat
tttccaaacattttctttccctttcttctagcccattttccctattttct
ctcttaacttttttttggttttctttccctgtctgttttcagctgattct
tggttgtcataaactttctgagcaatttccaaaagctgaaatctatccat
accctcaatccttctaattttggagcttttctttttatgtctggggctga
gtgcatgacaagccatggaaaaccacaacttgttccagagccaagccacc
cctagcaacagctatacttttgtacatagtcactccaccctgaataacag
ccatccgctccttagaggaaagtacctaatgtttcagattttttggaata
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_149091621_149092535
seq2: B6Ng01-043C02.b_44_967

seq1  GAATTCCATTGCAGCCTGGGCTATGGTATAAGTCTATATTTTATTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCAGCCTGGGCTATGGTATAAGTCTATATTTTATTTGATG  50

seq1  GATATGCTTTGCCTGCATGTGTATAAACACACTGTGTGTGGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTTTGCCTGCATGTGTATAAACACACTGTGTGTGGTGTGTGTGT  100

seq1  GTGTCTGCTGCCTGAAAAAAGCCAGAGGAGGGCACCAGATCCCCTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCTGCCTGAAAAAAGCCAGAGGAGGGCACCAGATCCCCTGGAAC  150

seq1  TGAAGTTATGATTGTGAGCTGCGTGTGGATGCTAGGAACCGAACCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTATGATTGTGAGCTGCGTGTGGATGCTAGGAACCGAACCTGGGT  200

seq1  CCACTGCAAGAGCATCAGGTGCTCTTTAACTGCTGAGCCATTTCTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAAGAGCATCAGGTGCTCTTTAACTGCTGAGCCATTTCTTTACA  250

seq1  TGCAAGGCTATCCTAAGACCAAAACAAACAAAAAGATATACCTTATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCTATCCTAAGACCAAAACAAACAAAAAGATATACCTTATTTCA  300

seq1  TTTCATGAACATTGTTATAAAAATAGTATGCCTGTATATTTGTGATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAACATTGTTATAAAAATAGTATGCCTGTATATTTGTGATTATG  350

seq1  AATTACTGAAAGGATTTCACAGGAAAAAAAAAAGTGGGCCTGGAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGAAAGGATTTCACAGGAAAAAAAAAAGTGGGCCTGGAGAGATG  400

seq1  GCTCAGCGGTTAGGAGCACTCACTGCTCTTCCAGAGGTCCTGAGTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCGGTTAGGAGCACTCACTGCTCTTCCAGAGGTCCTGAGTTCAAT  450

seq1  TCCCAGCAACCACATGGTGACTCACAACCATCTGTAATAGGATCTGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAACCACATGGTGACTCACAACCATCTGTAATAGGATCTGATAC  500

seq1  CCTCTAATGGTATATCTGAAGACAGTAACAGTACTCACATACATAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATGGTATATCTGAAGACAGTAACAGTACTCACATACATAAAATA  550

seq1  AATACATCTTAAAAAAAAAAAAAAGCCAGGCAGTGGTGGTGCCTGCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCTTAAAAAAAAAAAAAAGCCAGGCAGTGGTGGTGCCTGCCTTT  600

seq1  AATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCC  650

seq1  AGCCTGGTCTCCAGAGTGAGTTCCAGGACAGCCA-GGGCTATACAGAGAA  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCCTGGTCTCCAGAGTGAGTTCCAGGACAGCCAGGGGCTATACAGAGAA  700

seq1  ACCCTGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAA  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAA  750

seq1  AAAAAA-GAGCAATTAGA-TTTCTTTGCCCAAACTGGAAAGCCAAAGCTG  797
      |||||| ||| | || || ||| |||||||||||||||||||||||||||
seq2  AAAAAAGGAGTATTTTGATTTTTTTTGCCCAAACTGGAAAGCCAAAGCTG  800

seq1  TCCTCTGACATGAATTTG-CACTTACTT-CTGAGTTGTT-AGTGCATATT  844
       || |||||||||||||| | ||||||| |||||||||| || ||| |||
seq2  CCCCCTGACATGAATTTGCCCCTTACTTCCTGAGTTGTTAAGGGCA-ATT  849

seq1  ATTAT-GTGGCTAGCTTATTTTTCTTGTTATGTGGAAGGATAT-GGACAT  892
      ||||| | |||||||| |||||||||| |||| |||||||||| |||| |
seq2  ATTATGGGGGCTAGCTAATTTTTCTTGGTATGGGGAAGGATATGGGACTT  899

seq1  GTT-GGCTAGACTAAG-AAATTTCA  915
      ||| ||||||||| || ||||||||
seq2  GTTGGGCTAGACTTAGAAAATTTCA  924

seq1: chr6_149209608_149210718
seq2: B6Ng01-043C02.g_67_1168 (reverse)

seq1  TCTATTTCAAAACATCTGAAACATTAGGTACTTTCCTCTTAGGAGCTGAT  50
      |||||| ||||| |||||||||||||||||||||||||| |||||| || 
seq2  TCTATTCCAAAAAATCTGAAACATTAGGTACTTTCCTCTAAGGAGCGGA-  49

seq1  TGGCTGTTATTCAGGGTGGAGTGACTATTGTTACAAAAGTTATAGCTGTT  100
      ||||||||||||||||||||||||||||   |||||||| ||||||||||
seq2  TGGCTGTTATTCAGGGTGGAGTGACTAT--GTACAAAAG-TATAGCTGTT  96

seq1  GCTAGGGGTGGCTTGGCTCCTGGAACAAGTTGTGGTTTTTCCATGGCTTT  150
      |||||||||||||||||| |||||||||||||||| ||||||||||| ||
seq2  GCTAGGGGTGGCTTGGCT-CTGGAACAAGTTGTGG-TTTTCCATGGC-TT  143

seq1  GTCATGCACTCAGCCCCAGACATAAAAAG-AAAGCTCCAAAAATTAAGAG  199
      ||||||||||||||||||||||||||||| ||||||||||||  | ||| 
seq2  GTCATGCACTCAGCCCCAGACATAAAAAGAAAAGCTCCAAAA--TTAGAA  191

seq1  GGATTTGAGGGTATGGATAGATTTCAGCTTTTGGAAATTGCTCAGAAAGT  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGA-TTGAGGGTATGGATAGATTTCAGCTTTTGGAAATTGCTCAGAAAGT  240

seq1  TTATGACAACCAAGAATCAGCTGAAAACAGACAGGGAAAGAAAACCAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACAACCAAGAATCAGCTGAAAACAGACAGGGAAAGAAAACCAAAA  290

seq1  AAAAGTTAAGAGAGAAAATAGGGAAAATGGGCTAGAAGAAAGGGAAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAGAGAGAAAATAGGGAAAATGGGCTAGAAGAAAGGGAAAGAA  340

seq1  AATGTTTGGAAAATGTGCCTATTTTAAGCAGAAGGGCCACAGGAAGAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGGAAAATGTGCCTATTTTAAGCAGAAGGGCCACAGGAAGAAGG  390

seq1  AAAGCACTAGCTGAAAGAAAAAAAAAAAAAAAAAAAAGGGAAGCTGTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTAGCTGAAAGAAAAAAAAAAAAAAAAAAAAGGGAAGCTGTCCC  440

seq1  ATTCTCCAACTAAATTGAAGGGGACAGGGGAGTTATATATATATATATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAACTAAATTGAAGGGGACAGGGGAGTTATATATATATATATAT  490

seq1  TTAGTAACTATATATAACTTAGCAATATGACTTAGTCCCTGGGAATCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACTATATATAACTTAGCAATATGACTTAGTCCCTGGGAATCCAG  540

seq1  GATGACCATAAGGATGGGGGGAACCTGTCAACTTCCTGATAGACACTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCATAAGGATGGGGGGAACCTGTCAACTTCCTGATAGACACTGGG  590

seq1  TCAGCTCACTCTGTCTTGAAAGAACTACTTAGACTCCTCACCTCCAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCACTCTGTCTTGAAAGAACTACTTAGACTCCTCACCTCCAAGAA  640

seq1  AATAGTGATCCAAAGAGCTATAGGCCAAACACTCTATTTCCCATGGATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGATCCAAAGAGCTATAGGCCAAACACTCTATTTCCCATGGATAT  690

seq1  CTCTGAGCCTGTAGGAGACTATAACTCACTCTCTTCTGATTATGCCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCCTGTAGGAGACTATAACTCACTCTCTTCTGATTATGCCAGAT  740

seq1  TATTTTCTATACCCACTGACTGAGAGGGACTTGTTACAAAAACTCAGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATACCCACTGACTGAGAGGGACTTGTTACAAAAACTCAGAGC  790

seq1  CATCATCTCTTTTGAGGAAAACTTGGCTTATCTAACTCTAGACTCAGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTCTTTTGAGGAAAACTTGGCTTATCTAACTCTAGACTCAGGCC  840

seq1  AAACCCCTGTGAGCATTCTGATCACCTATTCTCTATTCCAGGAGTCTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTGTGAGCATTCTGATCACCTATTCTCTATTCCAGGAGTCTCTC  890

seq1  TTATATGAGAACTCTGCCACTAGGAAGGAAGCGCTATCTACATAACTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGAGAACTCTGCCACTAGGAAGGAAGCGCTATCTACATAACTCAA  940

seq1  GGTACCTGATATTTGAGCAGAAGGAAATCCACTAGGCTTGATAGCACACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGATATTTGAGCAGAAGGAAATCCACTAGGCTTGATAGCACACT  990

seq1  GGCGCCCATTGTAGTTCAGTTATTAAGTTCTGCAATACCAGTGTGGGTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCATTGTAGTTCAGTTATTAAGTTCTGCAATACCAGTGTGGGTTA  1040

seq1  AACAATGCCCCATGGGCCAGGAATTAACAAACACATCAAGCAACTGAGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCCCCATGGGCCAGGAATTAACAAACACATCAAGCAACTGAGGC  1090

seq1  AGTCAGGAATTC  1111
      ||||||||||||
seq2  AGTCAGGAATTC  1102