BAC Information

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BAC

Clone NameB6Ng01-043E11
Chromosome6 (Build37)2 (Build37)
Map Location 24,003,927 - 24,004,088162,789,117 - 162,790,176
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118
Downstream geneLOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043E11.bB6Ng01-043E11.g
ACCDH869390DH869391
length3681,047
definitionDH869390|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E11, 5' end.DH869391|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,003,927 - 24,004,088)(162,789,117 - 162,790,176)
sequence
ttggtggttaagggcactggctgctcttcccaggacgctaggtcagttcc
caaccacctgtgactgcagttcaagagtacccaatgtctctcttctagcc
tctgtgggcactgctccatgcacaccatgtagtacagacatacatgcagc
cagtatacccatcaatgtaaaaaaaaaaaatttaaagaataagaattttg
ccgggcatggtggtgcatgcctttaatcccagcactcgggaggcagaggc
aggtggatttctgagttcaaggccagcctggtctacagagtgagttccag
gacacccagggctacacagataaaccttgtctcggaaaaaaaaaaaaaaa
aacccaaacaaaaacaaa
gaattccccgctgtacatcataggcccttgctggctccacagcctggaca
ctgactggtctctgctcagatagccttcctttggtttgctctgcagctta
ttgcctatagtcaaagtctaaactggcagcctgttcctcttatctctgac
attcccattagctcacctcctgcttttaatctgtccggaggcaggtggca
ggtagcttgttagtagttacgtatcacatgatcccaagcaaagggtctga
gagaggttggggagagagaaagagagagagagagagccccccactgaaga
taattccatcctgggggctggatgtggagcttaggagtagagtgcccctc
ccagctgaccatatcgaaggccagtgactccactatgctgttcaccggga
cagttgatcttccattccagtctggccccaaagactacagttgggggtaa
caggtgattaatagggtcctgcctcctatagtgacaggaagtgcagattt
tttttttaaagtcactggccctaacattaactgacattgtgtcctggacc
acagatgtcatttggagaagatgttcgtgttggacatcttggaagacgag
gaggtgctgtttcttaaagcttttgtctggttgtggtaactccccagcca
gtacctttcccattccctgtacccttcagggatggaacatatcagtccct
ccttcccaaccatcccactactgccccagctgcctcaggcaagcatggca
aggcttgtttaggtaggggagacttgtcctcagcctgcctgaacttttgg
gtaaatacatcctgacagtcgcttaccttctcccacaagtcaacataagg
agatcattgccttggaaagacaggaagtccctgagcagcccagagcaccc
tcattcccgacctatttctcctgtgtctatttcccactttcaggcatcct
tgtagggacccactcctgtgtttaccggtgctctggctagctccagccac
tgaccctggctgtgcaaccctcttctgctcctagaggactcacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_24003927_24004088
seq2: B6Ng01-043E11.b_256_418

seq1  CATGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGTAGAGGCAGGTG  50
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CATGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTG  50

seq1  GATTTCTGAGTTCGAGGCCATCCTGGTCTACAGAGTGAGTTCCAGGACAG  100
      ||||||||||||| |||||| |||||||||||||||||||||||||||| 
seq2  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAC  100

seq1  CCAGGGCTACACAGAGAAACCCTGTCTCGGAAAACCAAAAAAACAAAACA  150
      ||||||||||||||| ||||| ||||||||||||  ||||||| ||| | 
seq2  CCAGGGCTACACAGATAAACCTTGTCTCGGAAAAAAAAAAAAAAAAACCC  150

seq1  AAAC-AAAACAAA  162
      |||| ||||||||
seq2  AAACAAAAACAAA  163

seq1: chr2_162789117_162790176
seq2: B6Ng01-043E11.g_68_1114

seq1  GAATTCCCCGCTGTACATCATAGGCCCTTGCTGGCTCCACAGCCTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGCTGTACATCATAGGCCCTTGCTGGCTCCACAGCCTGGACA  50

seq1  CTGACTGGTCTCTGCTCAGATAGCCTTCCTTTGGTTTGCTCTGCAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGTCTCTGCTCAGATAGCCTTCCTTTGGTTTGCTCTGCAGCTTA  100

seq1  TTGCCTATAGTCAAAGTCTAAACTGGCAGCCTGTTCCTCTTATCTCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATAGTCAAAGTCTAAACTGGCAGCCTGTTCCTCTTATCTCTGAC  150

seq1  ATTCCCATTAGCTCACCTCCTGCTTTTAATCTGTCCGGAGGCAGGTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATTAGCTCACCTCCTGCTTTTAATCTGTCCGGAGGCAGGTGGCA  200

seq1  GGTAGCTTGTTAGTAGTTACGTATCACATGATCCCAAGCAAAGGGTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTGTTAGTAGTTACGTATCACATGATCCCAAGCAAAGGGTCTGA  250

seq1  GAGAGGTTGGGGAGAGAGAAAGAGAGAGAGAGAGAGCCCCCCACTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTGGGGAGAGAGAAAGAGAGAGAGAGAGAGCCCCCCACTGAAGA  300

seq1  TAATTCCATCCTGGGGGCTGGATGTGGAGCTTAGGAGTAGAGTGCCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATCCTGGGGGCTGGATGTGGAGCTTAGGAGTAGAGTGCCCCTC  350

seq1  CCAGCTGACCATATCGAAGGCCAGTGACTCCACTATGCTGTTCACCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGACCATATCGAAGGCCAGTGACTCCACTATGCTGTTCACCGGGA  400

seq1  CAGTTGATCTTCCATTCCAGTCTGGCCCCAAAGACTACAGTTGGGGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATCTTCCATTCCAGTCTGGCCCCAAAGACTACAGTTGGGGGTAA  450

seq1  CAGGTGATTAATAGGGTCCTGCCTCCTATAGTGACAGGAAGTGCAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATTAATAGGGTCCTGCCTCCTATAGTGACAGGAAGTGCAGATTT  500

seq1  TTTTTTTAAAGTCACTGGCCCTAACATTAACTGACATTGTGTCCTGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAGTCACTGGCCCTAACATTAACTGACATTGTGTCCTGGACC  550

seq1  ACAGATGTCATTTGGAGAAGATGTTCGTGTTGGACATCTTGGAAGACGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTCATTTGGAGAAGATGTTCGTGTTGGACATCTTGGAAGACGAG  600

seq1  GAGGTGCTGTTTCTTAAAGCTTTTGTCTGGTTGTGGTAACTCCCCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGTTTCTTAAAGCTTTTGTCTGGTTGTGGTAACTCCCCAGCCA  650

seq1  GTACCTTTCCCATTCCCTGTACCCTTCAGGGATGGAACATATCAGTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTTCCCATTCCCTGTACCCTTCAGGGATGGAACATATCAGTCCCT  700

seq1  CCTTCCCAACCATCCCACTACTGCCCCAGCTGCCTCAGGCAAGCATGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAACCATCCCACTACTGCCCCAGCTGCCTCAGGCAAGCATGGCA  750

seq1  AGGCTTGTTTAGGTAGGGGAGACTTGTCCTCAGCCTGCCTGAACTTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTTTAGGTAGGGGAGACTTGTCCTCAGCCTGCCTGAACTTTTGG  800

seq1  GTAAATACATCCTGACAGTCGCTTACCTTCTCCCACAAGTCAACATAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACATCCTGACAGTCGCTTACCTTCTCCCACAAGTCAACATAAGG  850

seq1  AGATCATTGCCTTGGAAGGACAGGAAGTCCCTGAGCAGGCCCAGAGCAAC  900
      ||||||||||||||||| ||||||||||||||||||| ||||||||| ||
seq2  AGATCATTGCCTTGGAAAGACAGGAAGTCCCTGAGCA-GCCCAGAGC-AC  898

seq1  CCTCATTCCCGACCTATTTCTCCCTGTGTCTATTTCCCACTTCCAGGCAA  950
      ||||||||||||||||||||| |||||||||||||||||||| ||||| |
seq2  CCTCATTCCCGACCTATTTCT-CCTGTGTCTATTTCCCACTTTCAGGC-A  946

seq1  TCCTTGTAGGGAACCCACTCCTGTGTTTACCGGGTGCTCTGGGCTAGCTC  1000
      ||||||||||| ||||||||||||||||||| |||||||| |||||||||
seq2  TCCTTGTAGGG-ACCCACTCCTGTGTTTACC-GGTGCTCT-GGCTAGCTC  993

seq1  CAGCCAACCTGACCCTGGCTGGTGGCAACCCTCTTCTTGCTCCTAGAGTA  1050
      ||||||  |||||||||||||   |||||||||||| ||||||||||| |
seq2  CAGCCA--CTGACCCTGGCTG--TGCAACCCTCTTC-TGCTCCTAGAGGA  1038

seq1  CTCCACCTGT  1060
      || |||||||
seq2  CT-CACCTGT  1047