BAC Information

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BAC

Clone NameB6Ng01-043I01
Chromosome6 (Build37)
Map Location 144,151,771 - 144,188,788
singlet/doubletdoublet
Overlap geneSox5
Upstream geneEtnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043I01.bB6Ng01-043I01.g
ACCDH869545DH869546
length1,1241,108
definitionDH869545|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I01, 5' end.DH869546|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,187,661 - 144,188,788)(144,151,771 - 144,152,898)
sequence
gaattctctcaggacagaacgctggggacagagctgaggttaccaagaat
taagtcacgattgaaccaatggatcaaagaaagcctcttgatagaacatt
tgagattaaatctggaggataacttggtgttaactaagcaggaagaattt
gactcaaagtgaaatttgccttgtctgtgtcaggggaaagaaagccacac
cagcagcaggggtgccatttcatgggactgcgaagagggtgagggctaac
ttgaaactgaacctgttgaagagatagagaaaggagacttggtgcttatc
ctttctggatgtcacagctggatgtagctctttttaagaggccattctgg
ttgtagatggagcctagaggcagggcataagtggctgagaatagctcaaa
gaacagtgttactgagcaagacaccctgggacctggaacaatatggagat
gatggctaaagatgcttagagtagaatttgggagaaggtgagttttccag
cttaagtgtgaatgacagtggatagggagggaacagatcctgtgtgagat
gtgccctttgagcaagtgctgagttgggaagatgtcatctctatcttccc
tgacatttcccctattctcttgctcttctgtgtggctactttccatcgga
aatttacattcataatgtcccctgataagtatcaaatgtatacatttaaa
tgtcccatcctgtttcatctaccatgtgactaataaaaaagttaatagac
actaattgttgtcaactttgccaaaagactctcacaaatcttgttagttt
ctaacattctgttcatcttggagcctttaatgtatctcagcagggactgc
ttggaagcaccagggactgcttggaaggaaatatttttggcagctctcag
tcaaaccataaccactttcctcaaagactgactctggatgttctgtaggg
aatagctatatttttgcactgttgggttttttttttaaactttgtgatcc
aattttctagatatttctccatcaattatgcccatttgcagagtacgaca
cagctttcttcaactttagaacaacagtcatgcctatggcacattggata
catccatggtagccctcccccggc
gaattcatagtgacagcatagtagggttagacaatgaggctcgcgctgac
gagcagtcccacagtactcgatccctggagtccctgccatgccccttccc
caagttacagaggaaagcagcgaggaaagcagcctggagaaacacatgca
tgcaccattgacgagccagagccagagaagagtagcaacaactcagaata
acgagacaatgacaaatgtaccaatatcacagcagagctgaattctccaa
atgatacttagatcaaagagagaaagagacaggtttggagattcaggacg
cacgagtcaagccccagccggaactcactgcaggctccacgactgacctg
aactgtctataaacacccagaagcttttggttttccttttccttctgtca
tgttttatgaatataaaggtccttaaactaccttgtaatagattaattac
tttcaagctggttgacaaaagggcacaatgaccggaaaaaaatgatacaa
aaggaaacagagaagatgcatcttaacaagtttatcaacaaacctgggtt
gtactcctgaggtgcagagtgaggttcaatggttccaaattggcagaatt
caaattgggttcatatttgggtttttttgttttgtttgtttttttaaacc
acctgtcctaaaacgacattgtttatgctaattatctttgttgactctgc
aattctgtttgtttactacaattcttttaaaatgccatatccctctgaaa
cagttctcaccagaatccttctaaatcttgcctcggtctggtccttcccg
gcagcccagtgtgcagaatacaatgccacaaagcacgcgcaagagctggg
agcaagttggaggctgcgactcctcacgctggcaaaggctggcagtgttg
ctgaggtttccccgtcagcctccagagaaaaggacactgatgtggagaaa
cgcacacccccctattggacagcagcacatacgcagcacaggatcttcag
aggagatgggactctcagctagcagtcagagacggagacgtcactaggaa
ggcaagcagctttcagactgcaggcaagacccgagtcagaacagggaaaa
ggcctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144187661_144188788
seq2: B6Ng01-043I01.b_42_1165 (reverse)

seq1  GCCGGGGGA-GGCTA-CATGGATGTATCC-ATGTG-CATACGCATGACTG  46
      ||||||||| ||||| ||||||||||||| ||||| |||| |||||||||
seq2  GCCGGGGGAGGGCTACCATGGATGTATCCAATGTGCCATAGGCATGACTG  50

seq1  TTGTTCTAAAGTTTGAAGAAAGCTGTTGTCGTACTCTGCAAATGGGCATA  96
      ||||||||||| ||||||||||||| ||||||||||||||||||||||| 
seq2  TTGTTCTAAAG-TTGAAGAAAGCTG-TGTCGTACTCTGCAAATGGGCAT-  97

seq1  AATGGATGGAGAAAATATCTAGAAAAATTGGATCACAAAGTTTAAAAAAA  146
      ||| ||||||| |||||||||| ||||||||||||||||||||  |||||
seq2  AATTGATGGAG-AAATATCTAG-AAAATTGGATCACAAAGTTT--AAAAA  143

seq1  AAAAACCCAACAGTGCAAAAATATAGCTATTCCCTACAGAACATCCAGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAACAGTGCAAAAATATAGCTATTCCCTACAGAACATCCAGAG  193

seq1  TCAGTCTTTGAGGAAAGTGGTTATGGTTTGACCTGAGAGCTGCCAAAAAT  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGTCTTTGAGGAAAGTGGTTATGGTTTGA-CTGAGAGCTGCCAAAAAT  242

seq1  ATTTCCTTCCAAGCAGTCCCTGGTGCTTCCAAGCAGTCCCTGCTGAGATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTCCAAGCAGTCCCTGGTGCTTCCAAGCAGTCCCTGCTGAGATA  292

seq1  CATTAAAGGCTCCAAGATGAACAGAATGTTAGAAACTAACAAGATTTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGGCTCCAAGATGAACAGAATGTTAGAAACTAACAAGATTTGTG  342

seq1  AGAGTCTTTTGGCAAAGTTGACAACAATTAGTGTCTATTAACTTTTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTTTGGCAAAGTTGACAACAATTAGTGTCTATTAACTTTTTTAT  392

seq1  TAGTCACATGGTAGATGAAACAGGATGGGACATTTAAATGTATACATTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACATGGTAGATGAAACAGGATGGGACATTTAAATGTATACATTTG  442

seq1  ATACTTATCAGGGGACATTATGAATGTAAATTTCCGATGGAAAGTAGCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCAGGGGACATTATGAATGTAAATTTCCGATGGAAAGTAGCCA  492

seq1  CACAGAAGAGCAAGAGAATAGGGGAAATGTCAGGGAAGATAGAGATGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGAGCAAGAGAATAGGGGAAATGTCAGGGAAGATAGAGATGACA  542

seq1  TCTTCCCAACTCAGCACTTGCTCAAAGGGCACATCTCACACAGGATCTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAACTCAGCACTTGCTCAAAGGGCACATCTCACACAGGATCTGT  592

seq1  TCCCTCCCTATCCACTGTCATTCACACTTAAGCTGGAAAACTCACCTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTATCCACTGTCATTCACACTTAAGCTGGAAAACTCACCTTCT  642

seq1  CCCAAATTCTACTCTAAGCATCTTTAGCCATCATCTCCATATTGTTCCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTCTACTCTAAGCATCTTTAGCCATCATCTCCATATTGTTCCAG  692

seq1  GTCCCAGGGTGTCTTGCTCAGTAACACTGTTCTTTGAGCTATTCTCAGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGGTGTCTTGCTCAGTAACACTGTTCTTTGAGCTATTCTCAGCC  742

seq1  ACTTATGCCCTGCCTCTAGGCTCCATCTACAACCAGAATGGCCTCTTAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCCCTGCCTCTAGGCTCCATCTACAACCAGAATGGCCTCTTAAA  792

seq1  AAGAGCTACATCCAGCTGTGACATCCAGAAAGGATAAGCACCAAGTCTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTACATCCAGCTGTGACATCCAGAAAGGATAAGCACCAAGTCTCC  842

seq1  TTTCTCTATCTCTTCAACAGGTTCAGTTTCAAGTTAGCCCTCACCCTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATCTCTTCAACAGGTTCAGTTTCAAGTTAGCCCTCACCCTCTT  892

seq1  CGCAGTCCCATGAAATGGCACCCCTGCTGCTGGTGTGGCTTTCTTTCCCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCCCATGAAATGGCACCCCTGCTGCTGGTGTGGCTTTCTTTCCCC  942

seq1  TGACACAGACAAGGCAAATTTCACTTTGAGTCAAATTCTTCCTGCTTAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGACAAGGCAAATTTCACTTTGAGTCAAATTCTTCCTGCTTAGT  992

seq1  TAACACCAAGTTATCCTCCAGATTTAATCTCAAATGTTCTATCAAGAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCAAGTTATCCTCCAGATTTAATCTCAAATGTTCTATCAAGAGGC  1042

seq1  TTTCTTTGATCCATTGGTTCAATCGTGACTTAATTCTTGGTAACCTCAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATCCATTGGTTCAATCGTGACTTAATTCTTGGTAACCTCAGC  1092

seq1  TCTGTCCCCAGCGTTCTGTCCTGAGAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  TCTGTCCCCAGCGTTCTGTCCTGAGAGAATTC  1124

seq1: chr6_144151771_144152898
seq2: B6Ng01-043I01.g_63_1170

seq1  GAATTCATAGTGACAGCATAGTAGGGTTAGACAATGAGGCTCGCGCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGACAGCATAGTAGGGTTAGACAATGAGGCTCGCGCTGAC  50

seq1  GAGCAGTCCCACAGTACTCGATCCCTGGAGTCCCTGCCATGCCCCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCCCACAGTACTCGATCCCTGGAGTCCCTGCCATGCCCCTTCCC  100

seq1  CAAGTTACAGAGGAAAGCAGCGAGGAAAGCAGCCTGGAGAAACACATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACAGAGGAAAGCAGCGAGGAAAGCAGCCTGGAGAAACACATGCA  150

seq1  TGCACCATTGACGAGCCAGAGCCAGAGAAGAGTAGCAACAACTCAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCATTGACGAGCCAGAGCCAGAGAAGAGTAGCAACAACTCAGAATA  200

seq1  ACGAGACAATGACAAATGTACCAATATCACAGCAGAGCTGAATTCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACAATGACAAATGTACCAATATCACAGCAGAGCTGAATTCTCCAA  250

seq1  ATGATACTTAGATCAAAGAGAGAAAGAGACAGGTTTGGAGATTCAGGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTTAGATCAAAGAGAGAAAGAGACAGGTTTGGAGATTCAGGACG  300

seq1  CACGAGTCAAGCCCCAGCCGGAACTCACTGCAGGCTCCACGACTGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTCAAGCCCCAGCCGGAACTCACTGCAGGCTCCACGACTGACCTG  350

seq1  AACTGTCTATAAACACCCAGAAGCTTTTGGTTTTCCTTTTCCTTCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTATAAACACCCAGAAGCTTTTGGTTTTCCTTTTCCTTCTGTCA  400

seq1  TGTTTTATGAATATAAAGGTCCTTAAACTACCTTGTAATAGATTAATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGAATATAAAGGTCCTTAAACTACCTTGTAATAGATTAATTAC  450

seq1  TTTCAAGCTGGTTGACAAAAGGGCACAATGACCGGAAAAAAATGATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCTGGTTGACAAAAGGGCACAATGACCGGAAAAAAATGATACAA  500

seq1  AAGGAAACAGAGAAGATGCATCTTAACAAGTTTATCAACAAACCTGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGAGAAGATGCATCTTAACAAGTTTATCAACAAACCTGGGTT  550

seq1  GTACTCCTGAGGTGCAGAGTGAGGTTCAATGGTTCCAAATTGGCAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTGAGGTGCAGAGTGAGGTTCAATGGTTCCAAATTGGCAGAATT  600

seq1  CAAATTGGGTTCATATTTGGGTTTTTTTGTTTTGTTTGTTTTTTTAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGGGTTCATATTTGGGTTTTTTTGTTTTGTTTGTTTTTTTAAACC  650

seq1  ACCTGTCCTAAAACGACATTGTTTATGCTAATTATCTTTGTTGACTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCTAAAACGACATTGTTTATGCTAATTATCTTTGTTGACTCTGC  700

seq1  AATTCTGTTTGTTTACTACAATTCTTTTAAAATGCCATATCCCTCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTTGTTTACTACAATTCTTTTAAAATGCCATATCCCTCTGAAA  750

seq1  CAGTTCTCACCAGAATCCTTCTAAATCTTGCCTCGGTCTGGTCCTTCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCACCAGAATCCTTCTAAATCTTGCCTCGGTCTGGTCCTTCCCG  800

seq1  GCAGCCCAGTGTGCAGAATACAATGCCACAAAGCAGGCGCAAGAGCTGGG  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGCCCAGTGTGCAGAATACAATGCCACAAAGCACGCGCAAGAGCTGGG  850

seq1  AGCAAGTTGGAGGCTGCGACTCCTCAGGCTGGCAAAGGCTGGCAGTGTTG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCAAGTTGGAGGCTGCGACTCCTCACGCTGGCAAAGGCTGGCAGTGTTG  900

seq1  CTGAGGTTTCCCCGTCAGCCTCCAAGAGAAAAGGACACTGATGTGGAGAA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAGGTTTCCCCGTCAGCCTCC-AGAGAAAAGGACACTGATGTGGAGAA  949

seq1  ACGCACACCCCCCTATTGGACAAGCAGCACCATACGCCAGCCACAGGATC  1000
      ||||||||||||||||||||| ||||||| |||||| ||| |||||||||
seq2  ACGCACACCCCCCTATTGGAC-AGCAGCA-CATACG-CAG-CACAGGATC  995

seq1  TCCAGAGGAGATGGGGAACTCTCAGCTAGCAAGTCAGGAGAAAGGGAGAC  1050
      | |||||||||||||  ||||||||||||| ||||   ||| | ||||||
seq2  TTCAGAGGAGATGGG--ACTCTCAGCTAGC-AGTC---AGAGACGGAGAC  1039

seq1  GGCACTAGGGAAAGGGCAAAGCAGCTTCCAGACTGCAGGGCAGAACCCAG  1100
      | |||||||  ||||   ||||||||| |||||||||||  |||  || |
seq2  GTCACTAGG--AAGG--CAAGCAGCTTTCAGACTGCAGGCAAGA--CCCG  1083

seq1  AGTCAG-ACAGGGGAAAAAGGGCCCTGAT  1128
      |||||| ||||||  ||||||  ||||||
seq2  AGTCAGAACAGGG--AAAAGG--CCTGAT  1108