BAC Information

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BAC

Clone NameB6Ng01-043I17
Chromosome6 (Build37)
Map Location 124,383,707 - 124,384,806
singlet/doubletsinglet
Overlap geneClstn3
Upstream geneLOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5
Downstream geneC1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043I17.bB6Ng01-043I17.g
ACCDH869573DH869574
length1,1691,095
definitionDH869573|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I17, 5' end.DH869574|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaaacacctaaaaaaatg
ttcagcatccttaatcatcagggaaatacaaatcaaaacaaccctgagat
tccatctcacaccagccagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccactgttggtg
gaattgcaagcttgtacatactctggaaatcagtctggcggttcctcaga
aaattggacatagtaataccagaggatcccccaatacctctcctgggcat
atatccagaagatgttccaaccggtaagaaggacacatgctcaactatgt
tcatagaagccttatttgtaatagccagaagctggaaagaacccagatgc
ccctcaacagaggaagggatacaggaaatgtggtacatttacacaatgga
gtactactcagctatttaaaagaatgaatttataaaattcctgggcaaat
ggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaag
aactcacatgatatgtactcactgataagtggatattagcccagaaactt
agaatacccaagatacaagatacaatttgcaaaacacttgaaactcaaga
agaacaaagaccaaaagtgtggacaccttgctccttcttagaattgggaa
caaaacatccatggaaggagttacagaaacaaagtttggagctgagagga
aaggatggaccatctagagactgccatacctggagatccatcccataatc
agcctccaaacactgacaccactgcacacactagcaagattttgctgaaa
ggactctgatatagctgtctcttgtgaggctatgccggggcctagcaaac
acataagtggatgctcacagtcagctattggatggatcacagggccccaa
tggaggagctagagaaagtacccaaggagctaaaggggtctgccacccta
taggtggaacacaatacaaactacagtacccccggatctcttgtctctag
ctgcatattgtattagagaggcctagtcagcgtcatggaaaggaatgccc
tgctttgcaactttaatgctctcagtccaggacaccagtccagaatggga
atcgggggttggggatcgg
gaattcagtgtggcgtcttaagcaccaggcaaaggagagcctgatgaata
gaatggccaaggaagggtctgtgacatctgtggagtttgcactgcgtcct
ggagaacatgagggtctgagagggtagttaaggagagagacaagtgatga
ggacattatgacgttgttaccccaaactttgattcacatctgtcacatgg
ggaactttaaactctcttggtggttggcaccccaacgtgatgagagacag
ggatcaatgcttttttactttaatataaagtatatactgtgagttgctgt
gctgctgcaaagccttgctagctggtagctgaacaaagagaatccctaac
aactgtggaatcacagggtaggaagtgggcgcccatgaaagtctcagacc
ctttcttcatcagggaagagttatgctgagctgtggacagtgctttcaac
agtgtccctatgatcacatgaaccatttgctaaatcatcccttaatgttg
gctgcagtggtcacccaaggtcagagtttgctgtgtttagcaagatctaa
tgggctttcaaggtcttgatttttgtctgtagctaatttaaaaattctcc
caaccttctggtttatgctaatgaatcagagttgttggcctacagctgga
gtatttgcattttgtccttttttgaagtcacatctgctgtggcttgcact
cagaaggtgggattgcctgggcttagccacggggccatcttctggcaggg
tcgtgactccttggacttgtccattgacttggggacctgagaggggctgt
tttggaccgttgcatagaaagagaagctctgcccccactccccttcctcc
cccatacccaggcagttgagaaatgctgatccaaccaggccgatctttgc
cttggagccagagcctagtgagtgagcctgccggccccacccctacggag
taggtttgtttggcaagtagtacaaaatgggccatcgtcatgtgggatgt
gaactagcttgacagaaaaccatcatggtggctttggggtgctggtgtgc
tgctgggaccagcccgggcagcatctcattaccctgcttgtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124383707_124384806
seq2: B6Ng01-043I17.g_66_1160 (reverse)

seq1  CAGGACCAAGCAGGTAAATGAGAATGCCTGCCGGGGCT-GTCCCAGCAGC  49
      ||||| ||||||||  |||||| ||| ||||| ||||| |||||||||| 
seq2  CAGGA-CAAGCAGGGTAATGAG-ATG-CTGCCCGGGCTGGTCCCAGCAG-  46

seq1  CACA-CAGCACCCCAAAGCCACCCTGATGGTTCTCTGTCAAGCTAGTTCA  98
      |||| |||||||||||||||||| |||||||| |||||||||||||||||
seq2  CACACCAGCACCCCAAAGCCACCATGATGGTTTTCTGTCAAGCTAGTTCA  96

seq1  CATCCCAACATGACCGATGGCCCATTTTGTACTACTTGCCAAACAGATCT  148
      |||||| |||||| ||||||||||||||||||||||||||||||| | ||
seq2  CATCCC-ACATGA-CGATGGCCCATTTTGTACTACTTGCCAAACAAACCT  144

seq1  AACTCCGTAGGGGTGGGGCCGGCAGGCTCACTCACTAGGCTCTGGCTCCA  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTCCGTAGGGGTGGGGCCGGCAGGCTCACTCACTAGGCTCTGGCTCCA  193

seq1  AGGCAAAGATCGGCCTGGTTGGATCAGCATTTCTCAACTGCCTGGGTATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGATCGGCCTGGTTGGATCAGCATTTCTCAACTGCCTGGGTATG  243

seq1  GGGGAGGAAGGGGAGTGGGGGCAGAGCTTCTCTTTCTATGCAACGGTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAGGGGAGTGGGGGCAGAGCTTCTCTTTCTATGCAACGGTCCA  293

seq1  AAACAGCCCCTCTCAGGTCCCCAAGTCAATGGACAAGTCCAAGGAGTCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCCCTCTCAGGTCCCCAAGTCAATGGACAAGTCCAAGGAGTCAC  343

seq1  GACCCTGCCAGAAGATGGCCCCGTGGCTAAGCCCAGGCAATCCCACCTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGCCAGAAGATGGCCCCGTGGCTAAGCCCAGGCAATCCCACCTTC  393

seq1  TGAGTGCAAGCCACAGCAGATGTGACTTCAAAAAAGGACAAAATGCAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCAAGCCACAGCAGATGTGACTTCAAAAAAGGACAAAATGCAAAT  443

seq1  ACTCCAGCTGTAGGCCAACAACTCTGATTCATTAGCATAAACCAGAAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCTGTAGGCCAACAACTCTGATTCATTAGCATAAACCAGAAGGT  493

seq1  TGGGAGAATTTTTAAATTAGCTACAGACAAAAATCAAGACCTTGAAAGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAATTTTTAAATTAGCTACAGACAAAAATCAAGACCTTGAAAGCC  543

seq1  CATTAGATCTTGCTAAACACAGCAAACTCTGACCTTGGGTGACCACTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATCTTGCTAAACACAGCAAACTCTGACCTTGGGTGACCACTGCA  593

seq1  GCCAACATTAAGGGATGATTTAGCAAATGGTTCATGTGATCATAGGGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTAAGGGATGATTTAGCAAATGGTTCATGTGATCATAGGGACA  643

seq1  CTGTTGAAAGCACTGTCCACAGCTCAGCATAACTCTTCCCTGATGAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAAGCACTGTCCACAGCTCAGCATAACTCTTCCCTGATGAAGAA  693

seq1  AGGGTCTGAGACTTTCATGGGCGCCCACTTCCTACCCTGTGATTCCACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGAGACTTTCATGGGCGCCCACTTCCTACCCTGTGATTCCACAG  743

seq1  TTGTTAGGGATTCTCTTTGTTCAGCTACCAGCTAGCAAGGCTTTGCAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGGATTCTCTTTGTTCAGCTACCAGCTAGCAAGGCTTTGCAGCA  793

seq1  GCACAGCAACTCACAGTATATACTTTATATTAAAGTAAAAAAGCATTGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAACTCACAGTATATACTTTATATTAAAGTAAAAAAGCATTGAT  843

seq1  CCCTGTCTCTCATCACGTTGGGGTGCCAACCACCAAGAGAGTTTAAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCTCATCACGTTGGGGTGCCAACCACCAAGAGAGTTTAAAGTT  893

seq1  CCCCATGTGACAGATGTGAATCAAAGTTTGGGGTAACAACGTCATAATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTGACAGATGTGAATCAAAGTTTGGGGTAACAACGTCATAATGT  943

seq1  CCTCATCACTTGTCTCTCTCCTTAACTACCCTCTCAGACCCTCATGTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCACTTGTCTCTCTCCTTAACTACCCTCTCAGACCCTCATGTTCT  993

seq1  CCAGGACGCAGTGCAAACTCCACAGATGTCACAGACCCTTCCTTGGCCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACGCAGTGCAAACTCCACAGATGTCACAGACCCTTCCTTGGCCAT  1043

seq1  TCTATTCATCAGGCTCTCCTTTGCCTGGTGCTTAAGACGCCACACTGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATCAGGCTCTCCTTTGCCTGGTGCTTAAGACGCCACACTGAAT  1093

seq1  TC  1100
      ||
seq2  TC  1095