BAC Information

Click to search

BAC

Clone NameB6Ng01-043N12
Chromosome6 (Build37)
Map Location 50,921,201 - 51,016,337
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043N12.bB6Ng01-043N12.g
ACCDH869780DH869781
length1,1191,097
definitionDH869780|Mus musculus domesticus DNA, BAC clone: B6Ng01-043N12, 5' end.DH869781|Mus musculus domesticus DNA, BAC clone: B6Ng01-043N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,921,201 - 50,922,331)(51,015,225 - 51,016,337)
sequence
gaattcacctttgtcataaactccagggagtgatagaagcttgctcattt
tcacttcagaattgtacttatggaacacaagatttacaccaaagacaagg
aagtgctcttatgattgtctgcaccctccgagccaaggatagctggtgga
tttattagtgtcagttggctaacacatctggtcatacgatttgtttggaa
agggctttttaccaggaaaaggaatatacctgagcctgttaacaaaagct
gcttttaacgcctgcacttggtttgggagaacaggatcacggttgccatt
tgaccacggtgctgcctacccagcctgtaccaataagtatgcctaattac
caaactttccatggtaccaagagactttgttcatgctcaaatccttatat
gggttagcctagctcagcaagggactaaaccatccctgtttatagatgaa
cacattaaaacatggcggagatcatgtgacttccccacactcactctgtg
gcagcctcaagtccagacagtctgactccagggtgctcttcccaccgctc
ggtctgagctgagttccgtgagttagaggtgttgtctgcagtggattcct
acctactgagcaccaggcagatcaatagtcagataattgttagttgtaca
cttgtgcttcgtcttcatatttgtttattccttatttggtattttaatat
aattgaagtagaagacacatattataagagactcaaatattcagtcctgt
gtcttttccacagtgatacatgcatggccaaactaagaaatgtcaattct
aacgcagaagccccacttcatgctccccttaagtcatctcaacctccaaa
cacagaggggtaacatagggaacgtttgattataagcaactgctttgtaa
tcttgttactccttacatacattgtatttcctcggacaagtcaccttgct
tccttaagttcagtcccaccccacccctgaccctataaaacgggaacatt
aacagaatctgcatcgtgaggtacaagtgagttcaaatgaactggagtga
ggcgatagaaaagcccagctaaactacattcttctttctgcctcttgaga
ctgcagcaacaatcagaag
gaattcagagagctcctgctggacaaaaggatgggagaactcagagggaa
caaatgttcagggcccaagaaggtgaggaggaggagggagaagtcacagg
ccaaagggaagcaggggtgagaaagaagaggaggagggctggctcgaaga
gcctttcaaagcctgatttgatcagaaacaaagggcacttgacatgtttc
aaagagaaaagcaaaattagtcattatacctaccagcttgtttattgact
gtccagtaaatatcaatgcattctatccttggactttcaactaaagaagt
gtttgtcttgattaaaactatgaagtgagatgaaaagaacagggaaagca
tttggtcaggtttttgaaatactgtttgtagtgactgcctagctgcagaa
atgggaatttggaaggaccatctggaaaagatagaacaaaaattaaaaac
tgaatggggctggagagatggcttcacagttaagaacgcgtgctgctctt
ctgggggacccaacctcactccccagaacccacatttggtgactcacaac
tgcctgcaattccagctccagggtgtctaatgccttcttctggcctccag
aagctcatgaacatggaccccctttcttctatctcttaacaaagaaagta
tgctcagcagaccaaagggaggggaccatgtacaggtgtccgaacggttg
ttaatttgccaagttttgagctgtgagtttaccttgatgtggttttcagg
gaggattatagtttatcctttgtgagaagcaccatcttattataaaatgg
aaagaacagccttcacagaacccgagtcccgaattttgcttccggcatcc
atctcccatttacttaactagagaataaaattggagggaatttggcctca
ggttatagggctgggaaatgctttgagagacttcttgttggattacttct
aaacctccctgacagagaaaatttatcttattttagtgctccccagaggc
agagtgtcgcagactcctactaactcattgcagcgatacgatcttccaca
ttcaagaaatctctcctgtctttactaagctctctcttgtcagctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50921201_50922331
seq2: B6Ng01-043N12.b_47_1165

seq1  GAATTCACCTTTGTCATAAACTCCAGGGAGTGATAGAAGCTTGCTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTGTCATAAACTCCAGGGAGTGATAGAAGCTTGCTCATTT  50

seq1  TCACTTCAGAATTGTACTTATGGAACACAAGATTTACACCAAAGACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGAATTGTACTTATGGAACACAAGATTTACACCAAAGACAAGG  100

seq1  AAGTGCTCTTATGATTGTCTGCACCCTCCGAGCCAAGGATAGCTGGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCTTATGATTGTCTGCACCCTCCGAGCCAAGGATAGCTGGTGGA  150

seq1  TTTATTAGTGTCAGTTGGCTAACACATCTGGTCATACGATTTGTTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGTGTCAGTTGGCTAACACATCTGGTCATACGATTTGTTTGGAA  200

seq1  AGGGCTTTTTACCAGGAAAAGGAATATACCTGAGCCTGTTAACAAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTTTACCAGGAAAAGGAATATACCTGAGCCTGTTAACAAAAGCT  250

seq1  GCTTTTAACGCCTGCACTTGGTTTGGGAGAACAGGATCACGGTTGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAACGCCTGCACTTGGTTTGGGAGAACAGGATCACGGTTGCCATT  300

seq1  TGACCACGGTGCTGCCTACCCAGCCTGTACCAATAAGTATGCCTAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACGGTGCTGCCTACCCAGCCTGTACCAATAAGTATGCCTAATTAC  350

seq1  CAAACTTTCCATGGTACCAAGAGACTTTGTTCATGCTCAAATCCTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTCCATGGTACCAAGAGACTTTGTTCATGCTCAAATCCTTATAT  400

seq1  GGGTTAGCCTAGCTCAGCAAGGGACTAAACCATCCCTGTTTATAGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGCCTAGCTCAGCAAGGGACTAAACCATCCCTGTTTATAGATGAA  450

seq1  CACATTAAAACATGGCGGAGATCATGTGACTTCCCCACACTCACTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAACATGGCGGAGATCATGTGACTTCCCCACACTCACTCTGTG  500

seq1  GCAGCCTCAAGTCCAGACAGTCTGACTCCAGGGTGCTCTTCCCACCGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCAAGTCCAGACAGTCTGACTCCAGGGTGCTCTTCCCACCGCTC  550

seq1  GGTCTGAGCTGAGTTCCGTGAGTTAGAGGTGTTGTCTGCAGTGGATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGCTGAGTTCCGTGAGTTAGAGGTGTTGTCTGCAGTGGATTCCT  600

seq1  ACCTACTGAGCACCAGGCAGATCAATAGTCAGATAATTGTTAGTTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGAGCACCAGGCAGATCAATAGTCAGATAATTGTTAGTTGTACA  650

seq1  CTTGTGCTTCGTCTTCATATTTGTTTATTCCTTATTTGGTATTTTAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTTCGTCTTCATATTTGTTTATTCCTTATTTGGTATTTTAATAT  700

seq1  AATTGAAGTAGAAGACACATATTATAAGAGACTCAAATATTCAGTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTAGAAGACACATATTATAAGAGACTCAAATATTCAGTCCTGT  750

seq1  GTCTTTTCCACAGTGATACATGCATGGCCAAACTAAGAAATGTCAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCCACAGTGATACATGCATGGCCAAACTAAGAAATGTCAATTCT  800

seq1  AACGCAGAAGCCCCACTTCATGCTCCCCTTAAGTCATCTCAACCTCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGAAGCCCCACTTCATGCTCCCCTTAAGTCATCTCAACCTCCAAA  850

seq1  CACAGAGGGGTAACATAGGGAACGTTTGATTATAAGCAACTGCTTTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGGTAACATAGGGAACGTTTGATTATAAGCAACTGCTTTGTAA  900

seq1  TCTTGTTACTCCTTACATACATTGTATTTCCTCGGACAAGTCACCTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTACTCCTTACATACATTGTATTTCCTCGGACAAGTCACCTTGCT  950

seq1  TCCTTAAGGTTCAGTCCCCACCCCCACCCCCTGACCCCTATAAAACGGGA  1000
      ||||||| ||||||| ||||||||   ||||||| |||||||||||||||
seq2  TCCTTAA-GTTCAGT-CCCACCCC--ACCCCTGA-CCCTATAAAACGGGA  995

seq1  ACATTAACAGAATCTGCATCGTGAGGTTACAGTGAAGTTCAAATGAACTG  1050
      |||||||||||||||||||||||||||   |||| |||||||||||||||
seq2  ACATTAACAGAATCTGCATCGTGAGGTACAAGTG-AGTTCAAATGAACTG  1044

seq1  GAGTGAAGGCAGATAGAAAAGCCCAGGCTAAAACTACA-TCTTC-TTCTG  1098
      ||||| |||| |||||||||||||| ||| |||||||| ||||| |||||
seq2  GAGTG-AGGC-GATAGAAAAGCCCA-GCT-AAACTACATTCTTCTTTCTG  1090

seq1  CACTCTTGGAGACTGCCAGCAACAATCAAGAAG  1131
      | ||||| ||||||| ||||||||||| |||||
seq2  C-CTCTT-GAGACTG-CAGCAACAATC-AGAAG  1119

seq1: chr6_51015225_51016337
seq2: B6Ng01-043N12.g_67_1163 (reverse)

seq1  TAAGCTGGACAGAGAGGGGCTTAGGTAAGACAGGAGAAGGAATTTCCTGA  50
      |||||||   ||||| | ||||||  |||||||||||    ||||| |||
seq2  TAAGCTGACAAGAGA-GAGCTTAGTAAAGACAGGAGA---GATTTCTTGA  46

seq1  ATGTGG-AGATCGTTAAACGCTGCAATGAGTTAGTAAGGGAGTCTGCGGA  99
      |||||| |||||||  | ||||||||||||||||||  ||||||||| ||
seq2  ATGTGGAAGATCGT--ATCGCTGCAATGAGTTAGTA--GGAGTCTGC-GA  91

seq1  CACTCTGCCTCTGGGGAGCACTTAAAAATAAGATAAATTTTCCTCTGTCA  149
      ||||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  CACTCTGCCTCTGGGGAGCACT--AAAATAAGATAAATTTT-CTCTGTCA  138

seq1  GGGAGGGTTTAGAAGTAATCCAACCAGAAGGTCTCTCAAAGCATTTCCCA  199
      |||| ||||||||||||||||||| |||| ||||||||||||||||||||
seq2  GGGA-GGTTTAGAAGTAATCCAACAAGAA-GTCTCTCAAAGCATTTCCCA  186

seq1  GCCCTATAACCTGAAGGCCAAATTCCCTCCAATTTTATTTCTCTAGTTAA  249
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  GCCCTATAACCTG-AGGCCAAATTCCCTCCAATTTTA-TTCTCTAGTTAA  234

seq1  GTAAATGGGAGATGGATGCCGGAAGCAAAATTCGGGACTCGGGTTCTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGGAGATGGATGCCGGAAGCAAAATTCGGGACTCGGGTTCTGTG  284

seq1  AAGGCTGTTCTTTCCATTTTATAATAAGATGGTGCTTCTCACAAAGGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTTCTTTCCATTTTATAATAAGATGGTGCTTCTCACAAAGGATA  334

seq1  AACTATAATCCTCCCTGAAAACCACATCAAGGTAAAACTCACAGCTCAAA  399
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACTATAATCCTCCCTGAAAACCACATCAAGGT-AAACTCACAGCTCAAA  383

seq1  ACTTGGCAAATTAACAACCGTTCGGACACCTGTACATGGTCCCCTCCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCAAATTAACAACCGTTCGGACACCTGTACATGGTCCCCTCCCTT  433

seq1  TGGTCTGCTGAGCATACTTTCTTTGTTAAGAGATAGAAGAAAGGGGGTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCTGAGCATACTTTCTTTGTTAAGAGATAGAAGAAAGGGGGTCC  483

seq1  ATGTTCATGAGCTTCTGGAGGCCAGAAGAAGGCATTAGACACCCTGGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGAGCTTCTGGAGGCCAGAAGAAGGCATTAGACACCCTGGAGC  533

seq1  TGGAATTGCAGGCAGTTGTGAGTCACCAAATGTGGGTTCTGGGGAGTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGCAGGCAGTTGTGAGTCACCAAATGTGGGTTCTGGGGAGTGAG  583

seq1  GTTGGGTCCCCCAGAAGAGCAGCACGCGTTCTTAACTGTGAAGCCATCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTCCCCCAGAAGAGCAGCACGCGTTCTTAACTGTGAAGCCATCTC  633

seq1  TCCAGCCCCATTCAGTTTTTAATTTTTGTTCTATCTTTTCCAGATGGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCATTCAGTTTTTAATTTTTGTTCTATCTTTTCCAGATGGTCC  683

seq1  TTCCAAATTCCCATTTCTGCAGCTAGGCAGTCACTACAAACAGTATTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTCCCATTTCTGCAGCTAGGCAGTCACTACAAACAGTATTTCA  733

seq1  AAAACCTGACCAAATGCTTTCCCTGTTCTTTTCATCTCACTTCATAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGACCAAATGCTTTCCCTGTTCTTTTCATCTCACTTCATAGTTT  783

seq1  TAATCAAGACAAACACTTCTTTAGTTGAAAGTCCAAGGATAGAATGCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGACAAACACTTCTTTAGTTGAAAGTCCAAGGATAGAATGCATT  833

seq1  GATATTTACTGGACAGTCAATAAACAAGCTGGTAGGTATAATGACTAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTACTGGACAGTCAATAAACAAGCTGGTAGGTATAATGACTAATT  883

seq1  TTGCTTTTCTCTTTGAAACATGTCAAGTGCCCTTTGTTTCTGATCAAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCTCTTTGAAACATGTCAAGTGCCCTTTGTTTCTGATCAAATC  933

seq1  AGGCTTTGAAAGGCTCTTCGAGCCAGCCCTCCTCCTCTTCTTTCTCACCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGAAAGGCTCTTCGAGCCAGCCCTCCTCCTCTTCTTTCTCACCC  983

seq1  CTGCTTCCCTTTGGCCTGTGACTTCTCCCTCCTCCTCCTCACCTTCTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTTTGGCCTGTGACTTCTCCCTCCTCCTCCTCACCTTCTTGG  1033

seq1  GCCCTGAACATTTGTTCCCTCTGAGTTCTCCCATCCTTTTGTCCAGCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAACATTTGTTCCCTCTGAGTTCTCCCATCCTTTTGTCCAGCAGG  1083

seq1  AGCTCTCTGAATTC  1113
      ||||||||||||||
seq2  AGCTCTCTGAATTC  1097