BAC Information

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BAC

Clone NameB6Ng01-043O21
Chromosome6 (Build37)
Map Location 115,828,674 - 115,981,871
singlet/doubletdoublet
Overlap geneIft122, Rho, H1foo, Plxnd1, Tmcc1
Upstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4
Downstream geneLOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043O21.bB6Ng01-043O21.g
ACCDH869841DH869842
length7981,089
definitionDH869841|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O21, 5' end.DH869842|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,981,075 - 115,981,871)(115,828,674 - 115,829,767)
sequence
gaattcaagattcaatctaatctacttattcatcatgagcaccaaaactt
ccaagtgctggcccctgacagtaacagaaaggttaactctgaacccttca
ctgcagggtctgcctccaagcactgacatttacaaagctatttcaccaac
accttcattccctcctcaattccacaagtaaggaaataggaggcccagga
acttcttaagtttctttaaattcttttgtgaggtgggcaagtgtctgacc
caccttgccatgcctcagtttgtttgtttttttggtttttggtttttcga
gacagggtttctctgtgtagtcctggctgtcctggaactcactccgtaga
ccaggctggcctcgaactcagaaattcacctgcctctgcctcccttgtgc
tgggattaaaggcgtgtgccaccaggcccggccgatttttttttttttac
tttttaaaggaccttgtagatcttgacttcttatctagtttcaaaatggc
ataacagtatagagttttaaaatgtaggtttttaaaagtcaaacttggat
tcacatctttcctccttcaccctgtggctttagaagatagctctaggatc
tctgaattttaactgtttcttctgaggagaagataacgcctcccaccttc
caggagccctgatgggtttgcagagtagtgtctgaggcagctgtagctgt
ctgctgttttccagtctgctcttcaagcacatgaaccacatttaattcac
aataaaatgttctagcgatctttttgaggtgctgggggagggggacag
gaattcctatggcttgagagccactaaaaaaataaacaaacatgagctct
gcgccaactcctgaagcagtgtttctctcattcctactctcccggggaag
gagaaaacacgggctcaatatggttccgatgtcactggcagtcacttagc
cagcacccaaggagtagggccactatgtgcagagcttgagtgcaaatatt
cccgagggaggctggcaggaaggctcctgtgctgaaggcttcctgctctt
gcagtggagcacagacagaatgcatgggtggggtggaaatgtttgaaaaa
agggaggggaagactggcatttcacagacatttcccttttcaaccttgct
tagctacagggactctggggactcatgtgactgggacagctgggaatgaa
ggaaagataagacgcagttgggaaaactgggaatgaaggaaagataagac
gcagttgggaaaactgggattgtgtggaccacaactctccggaagcccag
tgtgtttattgtatgaagttgaatatagaggcagtattcttacttacagc
tgagtgaagaagctggatcaaggagacaggtttagctaatctctgtcaga
gcagtctcagcagggcacagtcttcaggccataaacatctgggaggaaag
ttgtcttggacattttctgcatgtattgccaatatccacccatggagcag
aaagggaaggctctaccatctcccccagtctttactcgaagctgtggcat
ccttgcttgacacgaagccatgcgagattacacattcacccaggactcca
tccactcacggcttcctctgctctctgtggatgcacttggctgtgtaaat
ttggatgtgctctgtatttcacgtagccgtacttcacggcccaggcaggg
tagaattggctttgtttgtctgttttgagggcactggaccacctctgggg
attggagggagcaagcctgaactgatccagtgtgccatgcgcaatgcaca
gttctatacagttcatgtgcatgacggagcctagaagggattctccaaag
gtcatcattcttacttttattttattagcttaacaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115981075_115981871
seq2: B6Ng01-043O21.b_48_845 (reverse)

seq1  CTGTCCCCCTCCCCCAGCCCCTCAAAAAGATCGCTAGAACATTTTATTGT  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTCCCCCTCCCCCAGCACCTCAAAAAGATCGCTAGAACATTTTATTGT  50

seq1  GAATTAAATGTGGTTCATGTGCTTGAAGAGCAGACTGG-AAACAGCAGAC  99
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATTAAATGTGGTTCATGTGCTTGAAGAGCAGACTGGAAAACAGCAGAC  100

seq1  AGCTACAGCTGCCTCAGACACTACTCTGCAAACCCATCAGGGCTCCTGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGCTGCCTCAGACACTACTCTGCAAACCCATCAGGGCTCCTGGA  150

seq1  AGGTGGGAGGCGTTATCTTCTCCTCAGAAGAAACAGTTAAAATTCAGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGGCGTTATCTTCTCCTCAGAAGAAACAGTTAAAATTCAGAGA  200

seq1  TCCTAGAGCTATCTTCTAAAGCCACAGGGTGAAGGAGGAAAGATGTGAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGCTATCTTCTAAAGCCACAGGGTGAAGGAGGAAAGATGTGAAT  250

seq1  CCAAGTTTGACTTTTAAAAACCTACATTTTAAAACTCTATACTGTTATGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTGACTTTTAAAAACCTACATTTTAAAACTCTATACTGTTATGC  300

seq1  CATTTTGAAACTAGATAAGAAGTCAAGATCTACAAGGTCCTTTAAAAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAACTAGATAAGAAGTCAAGATCTACAAGGTCCTTTAAAAAGT  350

seq1  AAAAAAAAAAAAATCGGCCGGGCCTGGTGGCACACGCCTTTAATCCCAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATCGGCCGGGCCTGGTGGCACACGCCTTTAATCCCAGC  400

seq1  ACAAGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCAGCCTGGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCAGCCTGGTC  450

seq1  TACGGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTC  500

seq1  GAAAAACCAAAAACCAAAAAAACAAACAAACTGAGGCATGGCAAGGTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAAAAACCAAAAAAACAAACAAACTGAGGCATGGCAAGGTGGG  550

seq1  TCAGACACTTGCCCACCTCACAAAAGAATTTAAAGAAACTTAAGAAGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTTGCCCACCTCACAAAAGAATTTAAAGAAACTTAAGAAGTTC  600

seq1  CTGGGCCTCCTATTTCCTTACTTGTGGAATTGAGGAGGGAATGAAGGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCCTATTTCCTTACTTGTGGAATTGAGGAGGGAATGAAGGTGT  650

seq1  TGGTGAAATAGCTTTGTAAATGTCAGTGCTTGGAGGCAGACCCTGCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATAGCTTTGTAAATGTCAGTGCTTGGAGGCAGACCCTGCAGTG  700

seq1  AAGGGTTCAGAGTTAACCTTTCTGTTACTGTCAGGGGCCAGCACTTGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCAGAGTTAACCTTTCTGTTACTGTCAGGGGCCAGCACTTGGAA  750

seq1  GTTTTGGTGCTCATGATGAATAAGTAGATTAGATTGAATCTTGAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTGCTCATGATGAATAAGTAGATTAGATTGAATCTTGAATTC  798

seq1: chr6_115828674_115829767
seq2: B6Ng01-043O21.g_67_1155

seq1  GAATTCCTATGGCTTGAGAGCCACTAAAAAAATAAACAAACATGAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGGCTTGAGAGCCACTAAAAAAATAAACAAACATGAGCTCT  50

seq1  GCGCCAACTCCTGAAGCAGTGTTTCTCTCATTCCTACTCTCCCGGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAACTCCTGAAGCAGTGTTTCTCTCATTCCTACTCTCCCGGGGAAG  100

seq1  GAGAAAACACGGGCTCAATATGGTTCCGATGTCACTGGCAGTCACTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACACGGGCTCAATATGGTTCCGATGTCACTGGCAGTCACTTAGC  150

seq1  CAGCACCCAAGGAGTAGGGCCACTATGTGCAGAGCTTGAGTGCAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCAAGGAGTAGGGCCACTATGTGCAGAGCTTGAGTGCAAATATT  200

seq1  CCCGAGGGAGGCTGGCAGGAAGGCTCCTGTGCTGAAGGCTTCCTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGAGGCTGGCAGGAAGGCTCCTGTGCTGAAGGCTTCCTGCTCTT  250

seq1  GCAGTGGAGCACAGACAGAATGCATGGGTGGGGTGGAAATGTTTGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGAGCACAGACAGAATGCATGGGTGGGGTGGAAATGTTTGAAAAA  300

seq1  AGGGAGGGGAAGACTGGCATTTCACAGACATTTCCCTTTTCAACCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGAAGACTGGCATTTCACAGACATTTCCCTTTTCAACCTTGCT  350

seq1  TAGCTACAGGGACTCTGGGGACTCATGTGACTGGGACAGCTGGGAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAGGGACTCTGGGGACTCATGTGACTGGGACAGCTGGGAATGAA  400

seq1  GGAAAGATAAGACGCAGTTGGGAAAACTGGGAATGAAGGAAAGATAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATAAGACGCAGTTGGGAAAACTGGGAATGAAGGAAAGATAAGAC  450

seq1  GCAGTTGGGAAAACTGGGATTGTGTGGACCACAACTCTCCGGAAGCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGGAAAACTGGGATTGTGTGGACCACAACTCTCCGGAAGCCCAG  500

seq1  TGTGTTTATTGTATGAAGTTGAATATAGAGGCAGTATTCTTACTTACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATTGTATGAAGTTGAATATAGAGGCAGTATTCTTACTTACAGC  550

seq1  TGAGTGAAGAAGCTGGATCAAGGAGACAGGTTTAGCTAATCTCTGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAGAAGCTGGATCAAGGAGACAGGTTTAGCTAATCTCTGTCAGA  600

seq1  GCAGTCTCAGCAGGGCACAGTCTTCAGGCCATAAACATCTGGGAGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCAGCAGGGCACAGTCTTCAGGCCATAAACATCTGGGAGGAAAG  650

seq1  TTGTCTTGGACATTTTCTGCATGTATTGCCAATATCCACCCATGGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGGACATTTTCTGCATGTATTGCCAATATCCACCCATGGAGCAG  700

seq1  AAAGGGAAGGCTCTACCATCTCCCCCAGTC-TTACTCGAAGCTGTGGCAT  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGGAAGGCTCTACCATCTCCCCCAGTCTTTACTCGAAGCTGTGGCAT  750

seq1  CCTTGCTTGACACGAAGCCATGCGAGATTACACATTCACCCAGGACTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTGACACGAAGCCATGCGAGATTACACATTCACCCAGGACTCCA  800

seq1  TCCACTCACGGCTTCCTCTGCTCTCTGTGGATGCACTTGGCTGTGTAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACGGCTTCCTCTGCTCTCTGTGGATGCACTTGGCTGTGTAAAT  850

seq1  TTGGATGTGCTCTGTATTTCACGTAGCCGTACTTCACGGCCCAGGCAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTGCTCTGTATTTCACGTAGCCGTACTTCACGGCCCAGGCAGGG  900

seq1  TAGAATTGGCTTTG-TTGTCTGTTTTGAGGGCACTGGACCACCTCTGGGG  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGAATTGGCTTTGTTTGTCTGTTTTGAGGGCACTGGACCACCTCTGGGG  950

seq1  ATTGGAGGGAGCAAGCCTGAACTGATCCAGTGTGCCATGCGCAGTGCACA  998
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGGAGGGAGCAAGCCTGAACTGATCCAGTGTGCCATGCGCAATGCACA  1000

seq1  GCTCACATACAG-TCATGTGCAGTGACAGAGGCCTAGAAAGGGGACTCTC  1047
      | ||  |||||| ||||||||| |||| || ||||||||  |||| ||||
seq2  GTTC-TATACAGTTCATGTGCA-TGACGGA-GCCTAGAA--GGGATTCTC  1045

seq1  CAAAAGCGCACTCATTACTCATTTTACTTTTATTAGCTTAACAACGA  1094
      | ||||  || ||||| || | |||  |||||||||||||||||| |
seq2  C-AAAGGTCA-TCATT-CTTACTTTTATTTTATTAGCTTAACAACCA  1089