BAC Information

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BAC

Clone NameB6Ng01-043P05
Chromosome6 (Build37)
Map Location 60,347,147 - 60,348,256
singlet/doubletsinglet
Overlap geneA530053G22Rik
Upstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717
Downstream geneLOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043P05.bB6Ng01-043P05.g
ACCDH869855DH869856
length1,2351,100
definitionDH869855|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P05, 5' end.DH869856|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgtcccacaatataatcaaatgacctccagtgccacacccact
ccagtgaagtctgtgtgacaggcctaaaggtttggatgcagtcctgaggc
aaagagtttcacggaaacttagcctcctggaaccttggcattcccatagc
acaaatgctccaaacctgtccctgcgttagtcgatgtgtgctttctttca
gtattgttttattaaaggtgcctccaagtaatggttttttaaatacctat
gaggttgaactttactccttggctttcaccaatgtcctaggcagttcttg
agctgaccctgggcttggaattttgtaaaaatgttattcatccagatgaa
atgccccagtgttgacagttagtaatcaggcatctcagtttgcctgatag
gagctagtattctcagggataatacaaaatagtaaacttaggattctcat
tacagacatcaatggcagcctacattacataatagtacaaagtaaggagg
ttgtggttttaggaggaactgacatattgtattattcatgaaagggttag
tagaatggaattcccctcgtgcatgtatttcactaggcctagaggaatag
cataattaagtatttactaagggatccctggtttaacaatagactaacat
tgcatcagaccattcacctggctcctgtgtttagcagatcctgagatagg
gctgttcctatctcagtggtaaacagtgcctggctccccccagcttttag
tgtatccattttctttgttttatgcaaagaactattatgcatctcgatgt
accttggttgatgtattcgcctagctttcttgtttttcttctgtgttata
agtctggtgctcactttgagaaattacattcagatacaacactcccttgt
gtttgcatctgtttgtcgcccttttcatagactccttgcccacctgtact
gggactctgattctccctcagaggggccgactgagcccctccgagggcac
atcttttctgttttcttcatttttattatatatctttaacctcatatttt
atccccctcaatcacccctccatgttctcatccatactactttcaggcaa
ctgtttcatcttgaatgtcccatcccccaccccactgactctaacttctg
gggtccaatctcttgaagggtagggcatatctatgaacgacctgcagtcc
attgaggcgtaccgagaccctcattaccacttgag
gaattccacagcatgatgtgcattgggtactttattgaaaactcttttac
aaagttgaaatcaatgcaattaatcttacataaagccagtaatgatattc
cttaacaatagggtgtgcagaaatccctgaataacaattgtgaatacctt
tgtttacaggcttgaatcaacatcaaaatttaattccaaggaatcaagta
tagtgactaatacaatttttctcctcctgagatcaaggctcctatttagg
gcatacatctgtgaggtaagaaaaagatggagacatttgaaattaatatt
ggatttcattcatgttttcatgtaagagtttgataatgttgagatgaaaa
tcaaaaatctttgtcattaactctaatttcatgtcattttacaggaatca
acttacctgtttcatatacattttcaatatttttagtaggaattttgacg
aacttagttagggtcacatattcttctcacatttcttgagtgatatttgt
cccagttgctgcattacatgtgaaaaagtaagaagagagagccactataa
tcataccaaagtgtctatgttcatcaagtcttgttactagttggtaaatc
atgctaatttaccaaacgtccctacaagaatggggatgccattcagggaa
acattctgaagtcaggtcagatatttttactgtggataagataatttctc
tccatcctgtatatctgagataccgatttacaatggggaatattaaaatt
agcattgaattattattaaacttatcatcatgtacaattcaccttgaatt
ttacatgatataattatacttgaagtatgttagtaaacacattcctgctc
ctgtgatcatgaaactaaagtcagggggcacagttattattgtaaatcac
agaaaagaaaaaattgtttctcccataaaataataacatactcataaaac
agatacattgaaattaatagaaagtagtgtgaaatgcttgaacacatggg
cacaggagaaattttcctgaacagaaaccaatggcttatgctttatgatc
acatcaaacaaatggacatcataaatgcaagcttctgttagctatatgaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60347147_60348256
seq2: B6Ng01-043P05.g_68_1167

seq1  GAATTCCACAGCATGATGTGCATTGGGTACTTTATTGAAAACTCTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCATGATGTGCATTGGGTACTTTATTGAAAACTCTTTTAC  50

seq1  AAAGTTGAAATCAATGCAATTAATCTTACATAAAGCCAGTAATGATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAATCAATGCAATTAATCTTACATAAAGCCAGTAATGATATTC  100

seq1  CTTAACAATAGGGTGTGCAGAAATCCCTGAATAACAATTGTGAATACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAATAGGGTGTGCAGAAATCCCTGAATAACAATTGTGAATACCTT  150

seq1  TGTTTACAGGCTTGAATCAACATCAAAATTTAATTCCAAGGAATCAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAGGCTTGAATCAACATCAAAATTTAATTCCAAGGAATCAAGTA  200

seq1  TAGTGACTAATACAATTTTTCTCCTCCTGAGATCAAGGCTCCTATTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTAATACAATTTTTCTCCTCCTGAGATCAAGGCTCCTATTTAGG  250

seq1  GCATACATCTGTGAGGTAAGAAAAAGATGGAGACATTTGAAATTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATCTGTGAGGTAAGAAAAAGATGGAGACATTTGAAATTAATATT  300

seq1  GGATTTCATTCATGTTTTCATGTAAGAGTTTGATAATGTTGAGATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATTCATGTTTTCATGTAAGAGTTTGATAATGTTGAGATGAAAA  350

seq1  TCAAAAATCTTTGTCATTAACTCTAATTTCATGTCATTTTACAGGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATCTTTGTCATTAACTCTAATTTCATGTCATTTTACAGGAATCA  400

seq1  ACTTACCTGTTTCATATACATTTTCAATATTTTTAGTAGGAATTTTGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTGTTTCATATACATTTTCAATATTTTTAGTAGGAATTTTGACG  450

seq1  AACTTAGTTAGGGTCACATATTCTTCTCACATTTCTTGAGTGATATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTTAGGGTCACATATTCTTCTCACATTTCTTGAGTGATATTTGT  500

seq1  CCCAGTTGCTGCATTACATGTGAAAAAGTAAGAAGAGAGAGCCACTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGCTGCATTACATGTGAAAAAGTAAGAAGAGAGAGCCACTATAA  550

seq1  TCATACCAAAGTGTCTATGTTCATCAAGTCTTGTTACTAGTTGGTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAAAGTGTCTATGTTCATCAAGTCTTGTTACTAGTTGGTAAATC  600

seq1  ATGCTAATTTACCAAACGTCCCTACAAGAATGGGGATGCCATTCAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTTACCAAACGTCCCTACAAGAATGGGGATGCCATTCAGGGAA  650

seq1  ACATTCTGAAGTCAGGTCAGATATTTTTACTGTGGATAAGATAATTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGAAGTCAGGTCAGATATTTTTACTGTGGATAAGATAATTTCTC  700

seq1  TCCATCCTGTATATCTGAGATACCGATTTACAATGGGGAATATTAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGTATATCTGAGATACCGATTTACAATGGGGAATATTAAAATT  750

seq1  AGCATTGAATTATTATTAAACTTATCATCATGTACAATTCACCTTGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGAATTATTATTAAACTTATCATCATGTACAATTCACCTTGAATT  800

seq1  TTACATGATATAATTATACTTGAAGTATGTTAGTAAACACATTCCTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATATAATTATACTTGAAGTATGTTAGTAAACACATTCCTGCTC  850

seq1  CTGTGAATCATGAAACTAAAGTCAGGGGGCACAGTTA-TATTGTAAATCA  899
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGTG-ATCATGAAACTAAAGTCAGGGGGCACAGTTATTATTGTAAATCA  899

seq1  CAGAAAAGAAAAAAATTGTTTTCTCCCATAAAATAATAACATACTCATAA  949
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAAAAG-AAAAAATTG-TTTCTCCCATAAAATAATAACATACTCATAA  947

seq1  AACCAGATACATTGAAATTAATAGAAAGTAGTGTGGAAATGCCTTGAACA  999
      || ||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  AA-CAGATACATTGAAATTAATAGAAAGTAGTGT-GAAATG-CTTGAACA  994

seq1  CATGGGCACAGGAGAAATTTTCCTGAACAGAAACCAATGGCTTATGCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCACAGGAGAAATTTTCCTGAACAGAAACCAATGGCTTATGCTTT  1044

seq1  ATGATCAACAATCAACAAATGGGACATCATAAAATTGCAAAGCTTCTGTT  1099
      |||||| |||   ||||||| ||||||||||||  ||| |||||||||||
seq2  ATGATC-ACATCAAACAAAT-GGACATCATAAA--TGC-AAGCTTCTGTT  1089

seq1  AGGCATATGAA  1110
      ||  |||||||
seq2  AGCTATATGAA  1100