BAC Information

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BAC

Clone NameB6Ng01-044A19
Chromosome6 (Build37)
Map Location 79,238,509 - 79,239,559
singlet/doubletsinglet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044A19.bB6Ng01-044A19.g
ACCDH869918DH869919
length1,0461,226
definitionDH869918|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A19, 5' end.DH869919|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtgaacacagaaatgggggaggaggttatgatcatttctgat
ttagcaaaagttgaaagtaaatttcaaccactctaaagttaaatacttcc
acctactataattagtctaaaatcaattttggtttgttattatgaagtga
aacaaattatggtttacatttgaatatatgaagtaaaattttcttaccca
taccattttacaaattgaaagacaattaagacatgctgagacatatcttt
ctttcagtttccacttctctttatttcttatttttgcatatatttttcct
gatagttgcctaaaatattaatatattttcatgtttagtttaattatgtt
tcaagcagttgagtatattctagaatactatgaatagaagctttatattt
tggggctagatacaatattctagataactagttattttgttgtacaaatg
atgttttattttattaaaataggcatttgtttatcttattgataggtaca
ataatttgaattttgtcttgattaaaatagattttgccaaagcaatgctt
taatgaattactgaagtgcatatctttgtatgtcttatgtgtctgtgcat
gtactcatgtatgtgtgagtgtgtatgttccatctacatgtgaataggtg
ggtatacttgtcactgcatgtgtggaggctgaaggatgatgctgaatgtt
tgctttgtaactctctgcatattcccttgaaagaacatcttttaagaacc
tgtaactatgttggcagccagtaaacctcagagaatctcttttcattgtc
tctcacagtcttaggcttgcagatgtgtggtcatcctgatacttttaggt
agtaataagaattcaaatcaaggtcttcattatggtgaaacaaattctct
tacacactgaaccaattcccaaccacattgctgtatgtattctattaaat
agagttatgtgttccaaacttagtctagtagacactaaactagatcttgt
aatggtatagatgacagctgcctgttaatatgcataactctgaact
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
ggagccagcatcaaagtaaatggagagaagctagaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaatttgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcacttcttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacagcacccttctcaatagtcacaaataatataaaatatctcggag
tgactctaactaaggacgtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaattttcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcacaattggtgctggc
acaactggtgtatcatgtagaagatacgaatcgatccatacttatctcct
tgtactaagtcaatctaaatggatcaaagaacttcacataaaccagagac
actgaacttatagaggagaagtgggaagcttgagaattgggcacaaggaa
attctgaacagacgcaatgcttgtgctctagatcgaatgacattggacta
ttgactctcagttcgcagcagacgtttaaggatacaatacatccacacga
tttgggaggagaatctttccactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79238509_79239559
seq2: B6Ng01-044A19.b_42_1087

seq1  GAATTCTGGTGAACACAGAAATGGGGGAGGAGGTTATGATCATTTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGAACACAGAAATGGGGGAGGAGGTTATGATCATTTCTGAT  50

seq1  TTAGCAAAAGTTGAAAGTAAATTTCAACCACTCTAAAGTTAAATACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAAGTTGAAAGTAAATTTCAACCACTCTAAAGTTAAATACTTCC  100

seq1  ACCTACTATAATTAGTCTAAAATCAATTTTGGTTTGTTATTATGAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTATAATTAGTCTAAAATCAATTTTGGTTTGTTATTATGAAGTGA  150

seq1  AACAAATTATGGTTTACATTTGAATATATGAAGTAAAATTTTCTTACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTATGGTTTACATTTGAATATATGAAGTAAAATTTTCTTACCCA  200

seq1  TACCATTTTACAAATTGAAAGACAATTAAGACATGCTGAGACATATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTACAAATTGAAAGACAATTAAGACATGCTGAGACATATCTTT  250

seq1  CTTTCAGTTTCCACTTCTCTTTATTTCTTATTTTTGCATATATTTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTTTCCACTTCTCTTTATTTCTTATTTTTGCATATATTTTTCCT  300

seq1  GATAGTTGCCTAAAATATTAATATATTTTCATGTTTAGTTTAATTATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTGCCTAAAATATTAATATATTTTCATGTTTAGTTTAATTATGTT  350

seq1  TCAAGCAGTTGAGTATATTCTAGAATACTATGAATAGAAGCTTTATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGTTGAGTATATTCTAGAATACTATGAATAGAAGCTTTATATTT  400

seq1  TGGGGCTAGATACAATATTCTAGATAACTAGTTATTTTGTTGTACAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTAGATACAATATTCTAGATAACTAGTTATTTTGTTGTACAAATG  450

seq1  ATGTTTTATTTTATTAAAATAGGCATTTGTTTATCTTATTGATAGGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTATTTTATTAAAATAGGCATTTGTTTATCTTATTGATAGGTACA  500

seq1  ATAATTTGAATTTTGTCTTGATTAAAATAGATTTTGCCAAAGCAATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGAATTTTGTCTTGATTAAAATAGATTTTGCCAAAGCAATGCTT  550

seq1  TAATGAATTACTGAAGTGCATATCTTTGTATGTCTTATGTGTCTGTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATTACTGAAGTGCATATCTTTGTATGTCTTATGTGTCTGTGCAT  600

seq1  GTACTCATGTATGTGTGAGTGTGTATGTTCCATCTACATGTGAATAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATGTATGTGTGAGTGTGTATGTTCCATCTACATGTGAATAGGTG  650

seq1  GGTATACTTGTCACTGCATGTGTGGAGGCTGAAGGATGATGCTGAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACTTGTCACTGCATGTGTGGAGGCTGAAGGATGATGCTGAATGTT  700

seq1  TGCTTTGTAACTCTCTGCATATTCCCTTGAAAGAACATCTTTTAAGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTAACTCTCTGCATATTCCCTTGAAAGAACATCTTTTAAGAACC  750

seq1  TGTAACTATGTTGGCAGCCAGTAAACCTCAGAGAATCTCTTTTCATTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTATGTTGGCAGCCAGTAAACCTCAGAGAATCTCTTTTCATTGTC  800

seq1  TCTCACAGTCTTAGGCTTGCAGATGTGTGGTCATCCTGATACTTTTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTCTTAGGCTTGCAGATGTGTGGTCATCCTGATACTTTTAGGT  850

seq1  AGTAATAAGAATTCAAATCAAGGTCTTCATTATGGTGAAACAAATTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAGAATTCAAATCAAGGTCTTCATTATGGTGAAACAAATTCTCT  900

seq1  TACACACTGAACCAATTCCCAACCACATTGCTGTATGTATTCTATTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTGAACCAATTCCCAACCACATTGCTGTATGTATTCTATTAAAT  950

seq1  AGAGTTATGTGTTCCATACTTAGTCTAGTAGACACTAAACTAGAATCTTG  1000
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AGAGTTATGTGTTCCAAACTTAGTCTAGTAGACACTAAACTAG-ATCTTG  999

seq1  TAATGGTTATAGATGACATGTCTGCCTGTTTATATGCTATACTTCTGAAC  1050
      |||||| |||||||||||   ||||||||| |||||| |||  |||||||
seq2  TAATGG-TATAGATGACA--GCTGCCTGTTAATATGC-ATAACTCTGAAC  1045

seq1  T  1051
      |
seq2  T  1046