BAC Information

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BAC

Clone NameB6Ng01-044H23
Chromosome6 (Build37)
Map Location 131,249,941 - 131,381,903
singlet/doubletdoublet
Overlap geneStyk1, Csda
Upstream geneLOC100038898, Klra12, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik
Downstream geneLOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H23.bB6Ng01-044H23.g
ACCDH870232DH870233
length1,0881,150
definitionDH870232|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H23, 5' end.DH870233|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,249,941 - 131,251,030)(131,380,744 - 131,381,903)
sequence
gaattccaatattcaattcatggttaaaaattagaaggtgttcattcatg
cccatctggtttatttttactctgtaatagtttaacttaaaaaaaaaaga
aaagaaaaactagtttcagtagtaaaccagcctggagtgagtgggaccag
cccttttgcctaattcccttacaatcattgcagattttaaaaacctcctt
tagaatgacacggtccaccacttatacttcagcccttgggactggaaagc
aaactacaattgatggtgattcttagctcaagagtacatggtatgtagag
gtagagcttcatccagcagcatttcagatgtctaggaaaatgtttaggga
aagatgcaagatccatgtccttttttctcccttggtgggccacagaaagt
tccttctctctgttcttgaaggaactaattccacccatatatagtcattt
gtctaggaccatcttcaaaggacactgaagctataggaaatgctttctgc
cctgatgccagccacatctgcatacagttcaggcaccaccaactctggca
cttgcaacacagccttgtcatcggcagatctagaagcagcttctaggcgc
tggagcagctgaccaagtaaggggcggctgtcctcactccagcgccaaca
gcacttcatgatgttgtacctgtgaaaggaaaggaacatagtccctcttc
aacaacaaaataaaacgctcagttctttgatcttcctactctgtctccct
atattctagactatatttccagaaactggtactctaccattttctttgta
tcaactctcaacatcctatcaatgtgattttttttataatagaatattag
agatgtttttcaaaccacagaatgtcagaagagccctgccttttccaaaa
tgcagtgcaatcttgtaacaaggctaggagaaactgtccgttctattcta
tggaatgaggggtagtggcttagactcatccaatgtttgaactatcttct
catcagaatgttaggtctttaaggtcaggacccttcttctggaatgaaaa
cataggttctagtcaagtcctcagtgatagcctcaaga
gaattctctgccatcagtgtaactatgaactttgctgttgacagtgtggc
tatctaatttttgtgatagggaaacaaattcttttaaatagaaataaata
gcaaaaaaataaataaagaaaagtttattgagccacagatgagctaggaa
cacctttttgtcaggtgtggtgacaaaagtcttttgaagaagttacactt
gtgggctctacagaatgttctggctggggctggagagaggctcagtgaaa
aagatcactggcttctcctacagaggatctgagttcagtccccagcacct
atgtagcagctcactgccacttatgattctgacgtcctcttctgggctcc
ttgagaaccagacatgcatgtggtgcacatacaaacatccagatacaacg
ctagcacataaaaatgaaagcaaatcttattttaaaagaaaaaaatcaaa
aaattaaagatgaattttaaaataaattacttagttgatactgtagctcc
aggatagagtgcttgcctagcatccctggggcctggaatttccttcatca
ccactacaaaaaggaaagaaaaatttaatcatgttgggaaggcaagttgt
ccttagaaaactcctggtaggagtgagccaaagccagatgatcctcacat
aggggtcccttgggtgggcagggcaaggagtgaacccagcttcccaccag
acccacaccatagagcctggacagggagctaagctgagatgaccaccaat
ctggtgcccagcagacctgagagggtgggcaagccatgtgggagatgatg
cctgcctggggccataatgtatgagagggggcatagcagtttcaagacta
ttcttcagacaaccccagacactcagtgaccctgggtgccacaaagggca
agaagtagtagacagtggaagagaagagagcagatgtgggcaaatgaata
taggcagaactggaaacttgaagttagtggaggaacagctgatttgagta
actggtgatgggattcttgggtgggtcctggcctttgttgacaatggagg
ccactcttggaccatggtcttgcagcagcaggggttgaaactctcaaagc
aagcagttgtccctgttctggctgccaaaggagatatgtccatgtctgag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131249941_131251030
seq2: B6Ng01-044H23.b_41_1128

seq1  GAATTCCAATATTCAATTCATGGTTAAAAATTAGAAGGTGTTCATTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATTCAATTCATGGTTAAAAATTAGAAGGTGTTCATTCATG  50

seq1  CCCATCTGGTTTATTTTTACTCTGTAATAGTTTAACTTAAAAAAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGGTTTATTTTTACTCTGTAATAGTTTAACTTAAAAAAAAAAGA  100

seq1  AAAGAAAAACTAGTTTCAGTAGTAAACCAGCCTGGAGTGAGTGGGACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACTAGTTTCAGTAGTAAACCAGCCTGGAGTGAGTGGGACCAG  150

seq1  CCCTTTTGCCTAATTCCCTTACAATCATTGCAGATTTTAAAAACCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGCCTAATTCCCTTACAATCATTGCAGATTTTAAAAACCTCCTT  200

seq1  TAGAATGACACGGTCCACCACTTATACTTCAGCCCTTGGGACTGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGACACGGTCCACCACTTATACTTCAGCCCTTGGGACTGGAAAGC  250

seq1  AAACTACAATTGATGGTGATTCTTAGCTCAAGAGTACATGGTATGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAATTGATGGTGATTCTTAGCTCAAGAGTACATGGTATGTAGAG  300

seq1  GTAGAGCTTCATCCAGCAGCATTTCAGATGTCTAGGAAAATGTTTAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCTTCATCCAGCAGCATTTCAGATGTCTAGGAAAATGTTTAGGGA  350

seq1  AAGATGCAAGATCCATGTCCTTTTTTCTCCCTTGGTGGGCCACAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAAGATCCATGTCCTTTTTTCTCCCTTGGTGGGCCACAGAAAGT  400

seq1  TCCTTCTCTCTGTTCTTGAAGGAACTAATTCCACCCATATATAGTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTCTGTTCTTGAAGGAACTAATTCCACCCATATATAGTCATTT  450

seq1  GTCTAGGACCATCTTCAAAGGACACTGAAGCTATAGGAAATGCTTTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGACCATCTTCAAAGGACACTGAAGCTATAGGAAATGCTTTCTGC  500

seq1  CCTGATGCCAGCCACATCTGCATACAGTTCAGGCACCACCAACTCTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCCAGCCACATCTGCATACAGTTCAGGCACCACCAACTCTGGCA  550

seq1  CTTGCAACACAGCCTTGTCATCGGCAGATCTAGAAGCAGCTTCTAGGCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAACACAGCCTTGTCATCGGCAGATCTAGAAGCAGCTTCTAGGCGC  600

seq1  TGGAGCAGCTGACCAAGTAAGGGGCGGCTGTCCTCACTCCAGCGCCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGCTGACCAAGTAAGGGGCGGCTGTCCTCACTCCAGCGCCAACA  650

seq1  GCACTTCATGATGTTGTACCTGTGAAAGGAAAGGAACATAGTCCCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCATGATGTTGTACCTGTGAAAGGAAAGGAACATAGTCCCTCTTC  700

seq1  AACAACAAAATAAAACGCTCAGTTCTTTGATCTTCCTACTCTGTCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAATAAAACGCTCAGTTCTTTGATCTTCCTACTCTGTCTCCCT  750

seq1  ATATTCTAGACTATATTTCCAGAAACTGGTACTCTACCATTTTCTTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAGACTATATTTCCAGAAACTGGTACTCTACCATTTTCTTTGTA  800

seq1  TCAACTCTCAACATCCTATCAATGTGATTTTTTTTATAATAGAATATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTCAACATCCTATCAATGTGATTTTTTTTATAATAGAATATTAG  850

seq1  AGATGTTTTTCAAACCACAGAATGTCAGAAGAGCCCTGCCTTTTCCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTTCAAACCACAGAATGTCAGAAGAGCCCTGCCTTTTCCAAAA  900

seq1  TGCAGTGCAATCTTGTAACAAGGCTAGGAGAAAACTGTCCGTTCTATTCT  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCAGTGCAATCTTGTAACAAGGCTAGGAG-AAACTGTCCGTTCTATTCT  949

seq1  ATGGAATGAGGGGTAGT-GCTTAGACTCATCCAATGTTTGAACTATCTTC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGGAATGAGGGGTAGTGGCTTAGACTCATCCAATGTTTGAACTATCTTC  999

seq1  TCATCAGAATGTTAGGTTCTTTAAGGTCAGGACCCTTCTTCTGGAATGAA  1049
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATCAGAATGTTAGG-TCTTTAAGGTCAGGACCCTTCTTCTGGAATGAA  1048

seq1  AACATAGGTTCCTAGTCAAGTCCTCAGTGATAGCCTCAAGA  1090
      |||||||||| ||||||||||||||||||||||||||||||
seq2  AACATAGGTT-CTAGTCAAGTCCTCAGTGATAGCCTCAAGA  1088

seq1: chr6_131380744_131381903
seq2: B6Ng01-044H23.g_69_1218 (reverse)

seq1  CTCAGACATTGACATATCCTCCTCTGGCAGCCCAGACCAGGGACAACTGC  50
      ||||||||| ||||||| ||||| |||||| ||||| |||||||||||||
seq2  CTCAGACATGGACATAT-CTCCTTTGGCAG-CCAGAACAGGGACAACTGC  48

seq1  CTGGCCTTTGGAGGTATCAGACCCCTGCTGCTGCAGGACCATGGGCCCAG  100
       ||  |||||   || ||| ||||||||||||||| |||||| || ||| 
seq2  TTG--CTTTGAGAGTTTCA-ACCCCTGCTGCTGCAAGACCAT-GGTCCAA  94

seq1  GAGTGGCCTCCATTGTCAACACAGGCCAGGACCCCACCAAG-ATCCCATC  149
      ||||||||||||||||||||| ||||||||||||  ||||| ||||||||
seq2  GAGTGGCCTCCATTGTCAACAAAGGCCAGGACCCACCCAAGAATCCCATC  144

seq1  ACCAGTTACTCATATCAGGCTGTTCCT-CACTAACTTCAAGTTTCCAGTT  198
      |||||||||||| |||| ||||||||| ||||||||||||||||||||||
seq2  ACCAGTTACTCAAATCA-GCTGTTCCTCCACTAACTTCAAGTTTCCAGTT  193

seq1  CTGCCTATATTCATTTTGCCCACATCCTGCTTCTTCTTCTCTTCCACTTG  248
      ||||||||||||| ||||||||||| |||||   ||||||||||||| ||
seq2  CTGCCTATATTCA-TTTGCCCACAT-CTGCT--CTCTTCTCTTCCAC-TG  238

seq1  TCTACTACTTCTTGCCCTTTGTGGCACCCAGGGTCACTGAGTGTCTGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACTTCTTGCCCTTTGTGGCACCCAGGGTCACTGAGTGTCTGGGG  288

seq1  TTGTCTGAAGAATAGTCTTGAAACTGCTATGCCCCCTCTCATACATTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAAGAATAGTCTTGAAACTGCTATGCCCCCTCTCATACATTATG  338

seq1  GCCCCAGGCAGGCATCATCTCCCACATGGCTTGCCCACCCTCTCAGGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCAGGCATCATCTCCCACATGGCTTGCCCACCCTCTCAGGTCT  388

seq1  GCTGGGCACCAGATTGGTGGTCATCTCAGCTTAGCTCCCTGTCCAGGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCACCAGATTGGTGGTCATCTCAGCTTAGCTCCCTGTCCAGGCTC  438

seq1  TATGGTGTGGGTCTGGTGGGAAGCTGGGTTCACTCCTTGCCCTGCCCACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTGGGTCTGGTGGGAAGCTGGGTTCACTCCTTGCCCTGCCCACC  488

seq1  CAAGGGACCCCTATGTGAGGATCATCTGGCTTTGGCTCACTCCTACCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACCCCTATGTGAGGATCATCTGGCTTTGGCTCACTCCTACCAGG  538

seq1  AGTTTTCTAAGGACAACTTGCCTTCCCAACATGATTAAATTTTTCTTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTAAGGACAACTTGCCTTCCCAACATGATTAAATTTTTCTTTCC  588

seq1  TTTTTGTAGTGGTGATGAAGGAAATTCCAGGCCCCAGGGATGCTAGGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAGTGGTGATGAAGGAAATTCCAGGCCCCAGGGATGCTAGGCAA  638

seq1  GCACTCTATCCTGGAGCTACAGTATCAACTAAGTAATTTATTTTAAAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTATCCTGGAGCTACAGTATCAACTAAGTAATTTATTTTAAAATT  688

seq1  CATCTTTAATTTTTTGATTTTTTTCTTTTAAAATAAGATTTGCTTTCATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAATTTTTTGATTTTTTTCTTTTAAAATAAGATTTGCTTTCATT  738

seq1  TTTATGTGCTAGCGTTGTATCTGGATGTTTGTATGTGCACCACATGCATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGCTAGCGTTGTATCTGGATGTTTGTATGTGCACCACATGCATG  788

seq1  TCTGGTTCTCAAGGAGCCCAGAAGAGGACGTCAGAATCATAAGTGGCAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTCAAGGAGCCCAGAAGAGGACGTCAGAATCATAAGTGGCAGT  838

seq1  GAGCTGCTACATAGGTGCTGGGGACTGAACTCAGATCCTCTGTAGGAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTACATAGGTGCTGGGGACTGAACTCAGATCCTCTGTAGGAGAA  888

seq1  GCCAGTGATCTTTTTCACTGAGCCTCTCTCCAGCCCCAGCCAGAACATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGATCTTTTTCACTGAGCCTCTCTCCAGCCCCAGCCAGAACATTC  938

seq1  TGTAGAGCCCACAAGTGTAACTTCTTCAAAAGACTTTTGTCACCACACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCCCACAAGTGTAACTTCTTCAAAAGACTTTTGTCACCACACCT  988

seq1  GACAAAAAGGTGTTCCTAGCTCATCTGTGGCTCAATAAACTTTTCTTTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGGTGTTCCTAGCTCATCTGTGGCTCAATAAACTTTTCTTTAT  1038

seq1  TTATTTTTTTGCTATTTATTTCTATTTAAAAGAATTTGTTTCCCTATCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTGCTATTTATTTCTATTTAAAAGAATTTGTTTCCCTATCAC  1088

seq1  AAAAATTAGATAGCCACACTGTCAACAGCAAAGTTCATAGTTACACTGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGATAGCCACACTGTCAACAGCAAAGTTCATAGTTACACTGAT  1138

seq1  GGCAGAGAATTC  1160
      ||||||||||||
seq2  GGCAGAGAATTC  1150