BAC Information

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BAC

Clone NameB6Ng01-044K07
Chromosome6 (Build37)
Map Location 144,071,572 - 144,166,459
singlet/doubletdoublet
Overlap geneSox5
Upstream geneEtnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044K07.bB6Ng01-044K07.g
ACCDH870338DH870339
length1,107641
definitionDH870338|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K07, 5' end.DH870339|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,165,324 - 144,166,459)(144,071,572 - 144,072,212)
sequence
gaattctcatactgcttctggggctttttggctgactttgtaatatatat
tttattgagcacataagaactgtatctaaatgctgcaggttcagatgttg
ggcatctgatgtggaaatcatatttcctacccaactccctctctcctccc
cctcggagcatttgtcatcacacaatgggtctttggtcgggtttattttt
tttttttatttttttctcttgttacagccaggctccctgggtagcacatt
ggctctacattcatagtcaagagactggcattcaaatcctcttctcctct
tatcagttgtgtaatccaaaaccggttaattattttccctgtcctttctt
ttaaaattgtggagaaaaagtaaacaagggaatctttgtaaatgctgtag
gtttctccgtaccaagaacccaatggctataaaccaggccgtgaagccca
catcccaacaggtcataattttattgtttgaacttcatctcttatcagtg
ttctgcttaaggagacttaggggaatccactctgaatttttctcatgatt
tttctcaggatatgtcctaacaaagtccagggcataccttcaagagaaga
cagagatttaagtctccttgtcaagaataatgacctagctgtgatggttg
gcaaaaatggactctggtttcttacaccagaaaaaaaataaaaatcaaac
caactgtgatttggtttaattaatatgaccttggactgtggcacagctga
cagacattgagccttttaggttccatttagtcctctcacaaggtttacag
gtgaggagttctgattgcagcccattgtctttttgtttttgtttgtttgt
tgtttgttgtttgttgcttggtttgagtcaattaacattgaggtttttgt
ttaacgattaataagtatttacccccaaatagttcttcaactcggaaaat
gaagagataacacgaccctttcctctctatcttaaaggggtgcattttaa
ttttatatttatatatagagagaaggatttaagtacaagtaattaagatg
ctgtgttgtctgtggaatattgactacgattcattggaatgcattttttt
cagcctg
gaattcatcatactttgatctggtgcccacgtttgttaagtggttataca
ggtataatgaagatgggggacataaagtatttttattcaatgtagagtag
acactgaataacgccaaccagctggacatttgatagccttgtttataatt
agaaacaatgtttaatgttaaagaaaacatattgtgggcccttcccacat
gcagtaaactattacaacatcaaaacagttttaagttgttggttaaacag
actgagccagggctcactgtgcaggctcctttttaaaaatattttatttt
atgtggatgagtatttgcctaaatgtatgtctgtatataccacatgtgta
tagtgtcatggaaaacccaagaagttgggttccctaaaactggaggcaca
gttgtttgtgaactgccatgtgggtgctaggagttgaaccaagttcctct
gcaagaggagccggtgcttttaactgctgaggcacatctccatcccctca
gactcctctcttaacaaatcgcttgggcaacagcacaggcatcttcagac
tggatttaggattaactaggagactagggaaacacacacacacacttgca
gggggggagaaggggtggacgtttaaagtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144165324_144166459
seq2: B6Ng01-044K07.b_44_1150 (reverse)

seq1  CAGGCTGGAAAAAAAATAGCATTTCCAAATGAATTCGGTAGTCCAATTAT  50
      |||||||  |||||||| |||||  | |||||||   ||||||  | |||
seq2  CAGGCTG--AAAAAAAT-GCATT--CCAATGAAT--CGTAGTC--AATAT  41

seq1  TCAACAGACAAACACAGCATCTTTAATTTACTTTGTACTTAAATCCCTCT  100
      || |||||| |||||||||||||  | |||| |||||||||||||| |||
seq2  TCCACAGAC-AACACAGCATCTT--AATTAC-TTGTACTTAAATCCTTCT  87

seq1  CTCTATATATTAAAATATTAAAAATTAAAATGCACACCTTTACAGATAGA  150
      ||||||||||  ||||||  ||||||||||||||| |||||| |||||||
seq2  CTCTATATAT--AAATAT--AAAATTAAAATGCACCCCTTTA-AGATAGA  132

seq1  GAGGAAAGGGTCGTTGTTATCTCTTCATTTTTCCCGAAGTTGAAGAACTA  200
      ||||||||||||| |||||||||||||||||  ||| |||||||||||||
seq2  GAGGAAAGGGTCG-TGTTATCTCTTCATTTT--CCG-AGTTGAAGAACTA  178

seq1  TTTGGGGGTAAAATACTTATTAATCGTTTAAACAAAAACCTCAATGTTAA  250
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TTTGGGGGT-AAATACTTATTAATCG-TTAAACAAAAACCTCAATGTTAA  226

seq1  TTGACTCAAAACCAAGCAAACAAACAAACAAACAAACAAACAAACAAAAA  300
      ||||||| ||||||||| ||||||| ||||||| ||||||||||| ||||
seq2  TTGACTC-AAACCAAGC-AACAAAC-AACAAAC-AACAAACAAAC-AAAA  271

seq1  ACAAAAAGACAATGGGCCTGCAATCAGAACTCCTCACCTGTAAACCTTGT  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAAAAAGACAATGGG-CTGCAATCAGAACTCCTCACCTGTAAACCTTGT  320

seq1  GAGAGGACTAAATGGAACCTAAAAGGCTCAATGTCTGTCAGCTGTGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACTAAATGGAACCTAAAAGGCTCAATGTCTGTCAGCTGTGCCAC  370

seq1  AGTCCAAGGTCATATTAATTAAACCAAATCACAGTTGGTTTGATTTTTA-  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTCCAAGGTCATATTAATTAAACCAAATCACAGTTGGTTTGATTTTTAT  420

seq1  TTTTTTTCTGGTGTAAGAAACCAGAGTCCATTTTTGCCAACCATCACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGGTGTAAGAAACCAGAGTCCATTTTTGCCAACCATCACAGC  470

seq1  TAGGTCATTATTCTTGACAAGGAGACTTAAATCTCTGTCTTCTCTTGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATTATTCTTGACAAGGAGACTTAAATCTCTGTCTTCTCTTGAAG  520

seq1  GTATGCCCTGGACTTTGTTAGGACATATCCTGAGAAAAATCATGAGAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCCTGGACTTTGTTAGGACATATCCTGAGAAAAATCATGAGAAAA  570

seq1  ATTCAGAGTGGATTCCCCTAAGTCTCCTTAAGCAGAACACTGATAAGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGTGGATTCCCCTAAGTCTCCTTAAGCAGAACACTGATAAGAGA  620

seq1  TGAAGTTCAAACAATAAAATTATGACCTGTTGGGATGTGGGCTTCACGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCAAACAATAAAATTATGACCTGTTGGGATGTGGGCTTCACGGC  670

seq1  CTGGTTTATAGCCATTGGGTTCTTGGTACGGAGAAACCTACAGCATTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTATAGCCATTGGGTTCTTGGTACGGAGAAACCTACAGCATTTAC  720

seq1  AAAGATTCCCTTGTTTACTTTTTCTCCACAATTTTAAAAGAAAGGACAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCCCTTGTTTACTTTTTCTCCACAATTTTAAAAGAAAGGACAGG  770

seq1  GAAAATAATTAACCGGTTTTGGATTACACAACTGATAAGAGGAGAAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATTAACCGGTTTTGGATTACACAACTGATAAGAGGAGAAGAGG  820

seq1  ATTTGAATGCCAGTCTCTTGACTATGAATGTAGAGCCAATGTGCTACCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATGCCAGTCTCTTGACTATGAATGTAGAGCCAATGTGCTACCCA  870

seq1  GGGAGCCTGGCTGTAACAAGAGAAAAAAATAAAAAAAAAAAATAAACCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTGGCTGTAACAAGAGAAAAAAATAAAAAAAAAAAATAAACCCG  920

seq1  ACCAAAGACCCATTGTGTGATGACAAATGCTCCGAGGGGGAGGAGAGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGACCCATTGTGTGATGACAAATGCTCCGAGGGGGAGGAGAGAGG  970

seq1  GAGTTGGGTAGGAAATATGATTTCCACATCAGATGCCCAACATCTGAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGTAGGAAATATGATTTCCACATCAGATGCCCAACATCTGAACC  1020

seq1  TGCAGCATTTAGATACAGTTCTTATGTGCTCAATAAAATATATATTACAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATTTAGATACAGTTCTTATGTGCTCAATAAAATATATATTACAA  1070

seq1  AGTCAGCCAAAAAGCCCCAGAAGCAGTATGAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCAAAAAGCCCCAGAAGCAGTATGAGAATTC  1107

seq1: chr6_144071572_144072212
seq2: B6Ng01-044K07.g_67_707

seq1  GAATTCATCATACTTTGATCTGGTGCCCACGTTTGTTAAGTGGTTATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATACTTTGATCTGGTGCCCACGTTTGTTAAGTGGTTATACA  50

seq1  GGTATAATGAAGATGGGGGACATAAAGTATTTTTATTCAATGTAGAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATGAAGATGGGGGACATAAAGTATTTTTATTCAATGTAGAGTAG  100

seq1  ACACTGAATAACGCCAACCAGCTGGACATTTGATAGCCTTGTTTATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATAACGCCAACCAGCTGGACATTTGATAGCCTTGTTTATAATT  150

seq1  AGAAACAATGTTTAATGTTAAAGAAAACATATTGTGGGCCCTTCCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATGTTTAATGTTAAAGAAAACATATTGTGGGCCCTTCCCACAT  200

seq1  GCAGTAAACTATTACAACATCAAAACAGTTTTAAGTTGTTGGTTAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAACTATTACAACATCAAAACAGTTTTAAGTTGTTGGTTAAACAG  250

seq1  ACTGAGCCAGGGCTCACTGTGCAGGCTCCTTTTTAAAAATATTTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCAGGGCTCACTGTGCAGGCTCCTTTTTAAAAATATTTTATTTT  300

seq1  ATGTGGATGAGTATTTGCCTAAATGTATGTCTGTATATACCACATGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGAGTATTTGCCTAAATGTATGTCTGTATATACCACATGTGTA  350

seq1  TAGTGTCATGGAAAACCCAAGAAGTTGGGTTCCCTAAAACTGGAGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCATGGAAAACCCAAGAAGTTGGGTTCCCTAAAACTGGAGGCACA  400

seq1  GTTGTTTGTGAACTGCCATGTGGGTGCTAGGAGTTGAACCAAGTTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTGAACTGCCATGTGGGTGCTAGGAGTTGAACCAAGTTCCTCT  450

seq1  GCAAGAGGAGCCGGTGCTTTTAACTGCTGAGGCACATCTCCATCCCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGAGCCGGTGCTTTTAACTGCTGAGGCACATCTCCATCCCCTCA  500

seq1  GACTCCTCTCTTAACAAATCGCTTGGGCAACAGCACAGGCATCTTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCTCTTAACAAATCGCTTGGGCAACAGCACAGGCATCTTCAGAC  550

seq1  TGGATTTAGGATTAACTAGGAGACTAGGGAAACACACACACACACTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAGGATTAACTAGGAGACTAGGGAAACACACACACACACTTGCA  600

seq1  GGGGGGGAGAAGGGGTGGACGTTTAAAGTGTGTGTGTGTGT  641
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAGAAGGGGTGGACGTTTAAAGTGTGTGTGTGTGT  641