BAC Information

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BAC

Clone NameB6Ng01-044M12
Chromosome6 (Build37)19 (Build37)
Map Location 127,191,465 - 127,192,28324,633,055 - 24,633,136
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642
Downstream geneLOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M12.bB6Ng01-044M12.g
ACCDH870438DH870439
length82289
definitionDH870438|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M12, 5' end.DH870439|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,191,465 - 127,192,283)(24,633,055 - 24,633,136)
sequence
gaattcttcctgcacaggagtcaagctgatggcttttccctatctgctgc
tcaagtatcagggtgtctcccccccacctctgtgcccacccttccacccc
ctcccatccttcccagtttccgtgcctgcctgcctcagtttgtaaaatga
ccatcttcttcactgccaaggtggccgagctctttttccacaaatctatt
acatcaaggtgacaggcatgtggtacacacctgggaagtgtttgaggcaa
gggaagaaggggcggggaaggaaacggagagaaacaaaaataagcaaata
caatagttttggtggtggggtttgctgatctgccatttgccaatgtggaa
actgctgagctgcaggctatctcagatctgcaagtaaaaggtgctccaag
ccgcatgggagagctgtgcctcagctgccctcaggccctgggctgtgtgg
gctcccgaggtaaagcctacctagttggagaaattaatatcaggtgcttc
ccccacagtggatttccctacctttaaggaggaaagattatttaaaatct
tgtttgaattttgtgaagtggaaattcccctccgtgtaacttctcacttg
cctcagtctgaggggatgcattgtgttaggagggtctctgagggggtgcg
ttaggagggtctctgagggggtgcgttaagagggactgagaccccgagca
tagagtggccgtaggatcctcgagcgatcatccagcccattcttttgagc
ttctcttctggtctcccttgggaaggcttttggatggctttagcttcaga
gatgcagggggtgggggagggg
caggacaatgagggctacacatagaaaccttgtgtgaaagagagagagag
agagagagagagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127191465_127192283
seq2: B6Ng01-044M12.b_43_864

seq1  GAATTCTTCCTGCACAGGAGTCAAGCTGATGGCTTTTCCCTATCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGCACAGGAGTCAAGCTGATGGCTTTTCCCTATCTGCTGC  50

seq1  TCAAGTATCAGGGTGTCTCCCCCCCACCTCTGTGCCCACCCTTCCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATCAGGGTGTCTCCCCCCCACCTCTGTGCCCACCCTTCCACCCC  100

seq1  CTCCCATCCTTCCCAGTTTCCGTGCCTGCCTGCCTCAGTTTGTAAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCCTTCCCAGTTTCCGTGCCTGCCTGCCTCAGTTTGTAAAATGA  150

seq1  CCATCTTCTTCACTGCCAAGGTGGCCGAGCTCTTTTTCCACAAATCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTTCACTGCCAAGGTGGCCGAGCTCTTTTTCCACAAATCTATT  200

seq1  ACATCAAGGTGACAGGCATGTGGTACACACCTGGGAAGTGTTTGAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGGTGACAGGCATGTGGTACACACCTGGGAAGTGTTTGAGGCAA  250

seq1  GGGAAGAAGGGGCGGGGAAGGAAACGGAGAGAAACAAAAATAAGCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAGGGGCGGGGAAGGAAACGGAGAGAAACAAAAATAAGCAAATA  300

seq1  CAATAGTTTTGGTGGTGGGGTTTGCTGATCTGCCATTTGCCAATGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTTTGGTGGTGGGGTTTGCTGATCTGCCATTTGCCAATGTGGAA  350

seq1  ACTGCTGAGCTGCAGGCTATCTCAGATCTGCAAGTAAAAGGTGCTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCTGCAGGCTATCTCAGATCTGCAAGTAAAAGGTGCTCCAAG  400

seq1  CCGCATGGGAGAGCTGTGCCTCAGCTGCCCTCAGGCCCTGGGCTGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATGGGAGAGCTGTGCCTCAGCTGCCCTCAGGCCCTGGGCTGTGTGG  450

seq1  GCTCCCGAGGTAAAGCCTACCTAGTTGGAGAAATTAATATCAGGTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCGAGGTAAAGCCTACCTAGTTGGAGAAATTAATATCAGGTGCTTC  500

seq1  CCCCACAGTGGATTTCCCTACCTTTAAGGAGGAAAGATTATTTAAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGTGGATTTCCCTACCTTTAAGGAGGAAAGATTATTTAAAATCT  550

seq1  TGTTTGAATTTTGTGAAGTGGAAATTCCCCTCCGTGTAACTTCTCACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAATTTTGTGAAGTGGAAATTCCCCTCCGTGTAACTTCTCACTTG  600

seq1  CCTCAGTCTGAGGGGATGCATTGTGTTAGGAGGGTCTCTGAGGGGGTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTCTGAGGGGATGCATTGTGTTAGGAGGGTCTCTGAGGGGGTGCG  650

seq1  TTAGGAGGGTCTCTGAGGGGGTGCGTTAAGA-GGACTGAGACCCCGAGCA  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAGGAGGGTCTCTGAGGGGGTGCGTTAAGAGGGACTGAGACCCCGAGCA  700

seq1  TAGAGTGGCCGTAGGATCCTCGAGCGATCATCCAGCCCATTC-TTTGAGC  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGAGTGGCCGTAGGATCCTCGAGCGATCATCCAGCCCATTCTTTTGAGC  750

seq1  TTCTCTTCTGGTCT-CCTTGGGAAGGCTTGTGGATGGCTTTAGCTTCAGA  797
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TTCTCTTCTGGTCTCCCTTGGGAAGGCTTTTGGATGGCTTTAGCTTCAGA  800

seq1  GATGCAGGGGGTGGGGGAGGGG  819
      ||||||||||||||||||||||
seq2  GATGCAGGGGGTGGGGGAGGGG  822

seq1: chr19_24633055_24633136
seq2: B6Ng01-044M12.g_85_160 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TGGTTTTTTGAGACAGGGTTTCTATGTGTAGC  82
            ||| | ||| ||||||||||||||||
seq2  ------TTTCACACAAGGTTTCTATGTGTAGC  76