BAC Information

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BAC

Clone NameB6Ng01-044O22
Chromosome6 (Build37)
Map Location 124,990,866 - 125,147,702
singlet/doubletdoublet
Overlap geneIng4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51
Upstream geneV2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384
Downstream geneVamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044O22.bB6Ng01-044O22.g
ACCDH870541DH870542
length812651
definitionDH870541|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O22, 5' end.DH870542|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,146,891 - 125,147,702)(124,990,866 - 124,991,512)
sequence
gaattcctagcactgaccctttccaagacctacttcaagcacttcaatcc
acagtcacacacacacacacacacacacacacacacacacacacacacac
acacacacacacgtgcatgcatgtgcacacacaattttctcacccccttt
taaaaacaaacaaacaaaacaaaaacaaaaacctcatgtgggactggaaa
gctggctcagtggttaagagctgctctaccagagatcctaaattcaatta
ccaggagccacatggtgactcataatcatctataatgagatctggtgctc
tcttctggtgtgcaggcctacgtgtaggcagaacactgtgtacacagtaa
atggataaacctaaaaacaaaaactcatgctgcaacaatatttttcccac
gcaattaccgaattcagatatgcatcttgtttacatacgcaccctgtacc
tgacggatgaaatctttttacaggcagtggtgtagccttggtttgtggtg
tatatgcctccaaggtccttccacacaatgattcagtgtttgttgaaggg
aaatgttgcattctttttcattacaaaaacaatccagctctgtgcttgaa
aaataagactttttgtaactgacagcaggaagaattttatacgggcttct
ggggctgacttgttagttccttcttcactaacacttgtgagattgtatta
aaacattttcctcttccttttctacctttccccctcctctttggtttctc
aagacagggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgt
gaattctgcttggaaaataaactatctaatcagcagtgtaggagattctg
gagtaataacaatacattagtctttgccttagaaataggcattcaatctg
acagtgagattattcaggaaaaaacttcagacagtaaaaaagacactgag
ctcaagaaagcagcatttaaaggataagatgtagtggttcacgcctttaa
ttccagcactcgggaggcagaggcaggcggatttctgagttcaaggccag
tctagtctacaaagtgagttccaggacagccaaggctacacagagaaacc
ctgtctcgggagaaaaaaaaatgtcgatgctggcaataccagaaggcctc
tgacctagtattcactgctaggaggaagtaagttacttgaacgagaaggt
ggtgccgactgcctcgggaaagatgagtcatctgatttggtaatctgttg
tgactagtaatcctagtgaactgctgtcacagactttaagaagccccctc
ttgtttttgtcttttcagacagtgtctgatttagcccaggttgaccttga
actccaggccctccttctatctccacagtgctattgattataagcaccaa
gccatattcagtacaaacattttttttacattttgagttcgacttacaga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125146891_125147702
seq2: B6Ng01-044O22.b_49_860 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50

seq1  AAACCCTGTCTTGAGAAACCAAAGAGGAGGGGGAAAGGTAGAAAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTTGAGAAACCAAAGAGGAGGGGGAAAGGTAGAAAAGGAAG  100

seq1  AGGAAAATGTTTTAATACAATCTCACAAGTGTTAGTGAAGAAGGAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGTTTTAATACAATCTCACAAGTGTTAGTGAAGAAGGAACTAA  150

seq1  CAAGTCAGCCCCAGAAGCCCGTATAAAATTCTTCCTGCTGTCAGTTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGCCCCAGAAGCCCGTATAAAATTCTTCCTGCTGTCAGTTACAA  200

seq1  AAAGTCTTATTTTTCAAGCACAGAGCTGGATTGTTTTTGTAATGAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTATTTTTCAAGCACAGAGCTGGATTGTTTTTGTAATGAAAAAG  250

seq1  AATGCAACATTTCCCTTCAACAAACACTGAATCATTGTGTGGAAGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACATTTCCCTTCAACAAACACTGAATCATTGTGTGGAAGGACCT  300

seq1  TGGAGGCATATACACCACAAACCAAGGCTACACCACTGCCTGTAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCATATACACCACAAACCAAGGCTACACCACTGCCTGTAAAAAGA  350

seq1  TTTCATCCGTCAGGTACAGGGTGCGTATGTAAACAAGATGCATATCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCGTCAGGTACAGGGTGCGTATGTAAACAAGATGCATATCTGAA  400

seq1  TTCGGTAATTGCGTGGGAAAAATATTGTTGCAGCATGAGTTTTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAATTGCGTGGGAAAAATATTGTTGCAGCATGAGTTTTTGTTTTT  450

seq1  AGGTTTATCCATTTACTGTGTACACAGTGTTCTGCCTACACGTAGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATCCATTTACTGTGTACACAGTGTTCTGCCTACACGTAGGCCTG  500

seq1  CACACCAGAAGAGAGCACCAGATCTCATTATAGATGATTATGAGTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAAGAGAGCACCAGATCTCATTATAGATGATTATGAGTCACCA  550

seq1  TGTGGCTCCTGGTAATTGAATTTAGGATCTCTGGTAGAGCAGCTCTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCCTGGTAATTGAATTTAGGATCTCTGGTAGAGCAGCTCTTAAC  600

seq1  CACTGAGCCAGCTTTCCAGTCCCACATGAGGTTTTTGTTTTTGTTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCAGCTTTCCAGTCCCACATGAGGTTTTTGTTTTTGTTTTGTT  650

seq1  TGTTTGTTTTTAAAAGGGGGTGAGAAAATTGTGTGTGCACATGCATGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTAAAAGGGGGTGAGAAAATTGTGTGTGCACATGCATGCAC  700

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  GTGTGTGACTGTGGATTGAAGTGCTTGAAGTAGGTCTTGGAAAGGGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGACTGTGGATTGAAGTGCTTGAAGTAGGTCTTGGAAAGGGTCAG  800

seq1  TGCTAGGAATTC  812
      ||||||||||||
seq2  TGCTAGGAATTC  812

seq1: chr6_124990866_124991512
seq2: B6Ng01-044O22.g_67_717

seq1  GAATTCTGCTTGGAAAATAAACTATCTAATCAGCAGTGTAGGAGATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTGGAAAATAAACTATCTAATCAGCAGTGTAGGAGATTCTG  50

seq1  GAGTAATAACAATACATTAGTCTTTGCCTTAGAAATAGGCATTCAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATAACAATACATTAGTCTTTGCCTTAGAAATAGGCATTCAATCTG  100

seq1  ACAGTGAGATTATTCAGGAAAAAACTTCAGACAGTAAAAAAGACACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGATTATTCAGGAAAAAACTTCAGACAGTAAAAAAGACACTGAG  150

seq1  CTCAAGAAAGCAGCATTTAAAGGATAAGATGTAGTGGTTCACGCCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAAGCAGCATTTAAAGGATAAGATGTAGTGGTTCACGCCTTTAA  200

seq1  TTCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAG  250

seq1  TCTAGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACC  300

seq1  CTGTCTCGGGAGAAAAAAAAATGTCGATGCTGGCAATACCAGAAGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCGGGAGAAAAAAAAATGTCGATGCTGGCAATACCAGAAGGCCTC  350

seq1  TGACCTAGTATTCACTGCTAGGAGGAAGTAAGTTACTTGAACGAGAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGTATTCACTGCTAGGAGGAAGTAAGTTACTTGAACGAGAAGGT  400

seq1  GGTGCCGACTGCCTCGGGAAAGATGAGTCATCTGATTTGGTAATCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCGACTGCCTCGGGAAAGATGAGTCATCTGATTTGGTAATCTGTTG  450

seq1  TGACTAGTAATCCTAGTGAACTGCTGTCACAGAC-TTAAGAAGCCCCCTC  499
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGACTAGTAATCCTAGTGAACTGCTGTCACAGACTTTAAGAAGCCCCCTC  500

seq1  TTG-TTTTGTCTTTTCAGACAGTGTCTGATTTAGCCCAGGTTGACCTTGA  548
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTCTTTTCAGACAGTGTCTGATTTAGCCCAGGTTGACCTTGA  550

seq1  ACTCCAGGCCCTCCTTCTATCTCCACAGTGCTATTGATTATAAGCACCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGCCCTCCTTCTATCTCCACAGTGCTATTGATTATAAGCACCAA  600

seq1  GCCATATTCAGTACAAACA-TTTTTTTACA-TTTGAGTTCGACTTACAGA  646
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GCCATATTCAGTACAAACATTTTTTTTACATTTTGAGTTCGACTTACAGA  650

seq1  A  647
      |
seq2  A  651