BAC Information

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BAC

Clone NameB6Ng01-045B03
Chromosome6 (Build37)
Map Location 79,794,352 - 79,795,415
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045B03.bB6Ng01-045B03.g
ACCDH870636DH870637
length9921,063
definitionDH870636|Mus musculus domesticus DNA, BAC clone: B6Ng01-045B03, 5' end.DH870637|Mus musculus domesticus DNA, BAC clone: B6Ng01-045B03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaataagtcacagtccaacaaaacacacaaacaaaaataacaca
ggctcaaaaacaagccatataaaaggcaaaatactacaagtctccaattc
attgttggctattgatttatgctgctgtaagccctggaggctgtctcttt
gtctttcactactagtaagcaagaagtatcctttttctgatctttgtagt
cattgacaaccatatatccatacctccatgcagacagtctaatacacaca
cacacacacacacacacacacacacacacacacatttaaaaaatattatt
taataagagttttgtggggtcactcttctttttttattttttattggtta
ttttatttatttgcatttccaatggtttcctgcttcttgttttctcttct
gcaacccccctatcccaaaccctccccactgcttctatgaggttgctccc
tcacccacccacccactcctgcctcactgtcctagcattcccctacactg
aggcatcaagtcctgacaggactaagtgccttccctcccactgatgttag
acaatgtcaccctctgctacatattcagctggagccatggctctcttcat
gtgtactgtttggttagtggtttagaccctgggagctctagagtgtctgg
ttggttgatattgttttttttcctatgaggttgcaaatcccttcagccct
ttctgtccttttccataattcctgcattgaggtccccatgctcagcctaa
tggttagctgcaagcatcctcatctctattggtgaggctctgagcctcac
aggaaacagttttattaggctcctgtgagcaagcacttcctgacattagc
atatgtctgggttggtgtctgtatatgggatggggttccagtaaggcatc
tcggatggcctttcttagctctgttcactcttgtaaccgatatctttatc
agaagcattctggttaaattgtgaagtgggtggtaccctatc
gaattcactgtatgacccaggctactcttaaccaacaatcagtctacttt
atcctatgtatgctgagtttttaaagatgagtcatgtgatgaagacaaaa
ctccagaaggttttctttcttaatctagtgtgttcgtttctgtggtatga
aaatataattaatgccgtttttgttttaaggatttaaaatttcttctgtg
ttgctaagcagtaacttcttaactatggtacctagataggtctttgcatt
gtactaaaataactctctcaataatctcttcttcagaagaggaaacatca
ttctttccactgattgctctttttattctggctattcattttccagcatg
tctaatactgtttatatcaccaacttcaaatgctttacattatttactgt
tctcagaaaatctgaaacagtacctatggccctggaccatcagtaaattg
aaggagtgttgtaatttagagcttatgttttatgaatcaatataagaatt
gtaatgaaataatgacaacatatttattaatgggaaagacagaaggaaat
tcacatctacttctgtctcaagcagaggcacaagtctgttctcttacact
gtacttgctaagttctagatcacccaggttgctgatagtcagataccatt
tgcagtgctgctactgaactctttcatcggtttgtttttttgttgttgtt
gtcattgttgttgttaatctactgtgagtgcagaatttattcatggcttc
ttatttgatttatcatttagatatagcttagcaatttctttaaaaattaa
ttctggattcctaagcatccctaggattttgtcattagatttttggaaga
aatattacttggttgcgggtattccagaatcttctttgcaaaaaattaag
tgtggtgtgggtttctactgaataatacatttttgcttataggcaactat
gcttcatttgaaatttcatggacacattttacttctacatatgtttctta
attgtttcttgtgctgtttcttccaggaaagtgggttccatatttctgac
cgtaagttggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79794352_79795415
seq2: B6Ng01-045B03.g_68_1130

seq1  GAATTCACTGTATGACCCAGGCTACTCTTAACCAACAATCAGTCTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATGACCCAGGCTACTCTTAACCAACAATCAGTCTACTTT  50

seq1  ATCCTATGTATGCTGAGTTTTTAAAGATGAGTCATGTGATGAAGACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGTATGCTGAGTTTTTAAAGATGAGTCATGTGATGAAGACAAAA  100

seq1  CTCCAGAAGGTTTTCTTTCTTAATCTAGTGTGTTCGTTTCTGTGGTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAGGTTTTCTTTCTTAATCTAGTGTGTTCGTTTCTGTGGTATGA  150

seq1  AAATATAATTAATGCCGTTTTTGTTTTAAGGATTTAAAATTTCTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTAATGCCGTTTTTGTTTTAAGGATTTAAAATTTCTTCTGTG  200

seq1  TTGCTAAGCAGTAACTTCTTAACTATGGTACCTAGATAGGTCTTTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGCAGTAACTTCTTAACTATGGTACCTAGATAGGTCTTTGCATT  250

seq1  GTACTAAAATAACTCTCTCAATAATCTCTTCTTCAGAAGAGGAAACATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAAATAACTCTCTCAATAATCTCTTCTTCAGAAGAGGAAACATCA  300

seq1  TTCTTTCCACTGATTGCTCTTTTTATTCTGGCTATTCATTTTCCAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCACTGATTGCTCTTTTTATTCTGGCTATTCATTTTCCAGCATG  350

seq1  TCTAATACTGTTTATATCACCAACTTCAAATGCTTTACATTATTTACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACTGTTTATATCACCAACTTCAAATGCTTTACATTATTTACTGT  400

seq1  TCTCAGAAAATCTGAAACAGTACCTATGGCCCTGGACCATCAGTAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAATCTGAAACAGTACCTATGGCCCTGGACCATCAGTAAATTG  450

seq1  AAGGAGTGTTGTAATTTAGAGCTTATGTTTTATGAATCAATATAAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGTTGTAATTTAGAGCTTATGTTTTATGAATCAATATAAGAATT  500

seq1  GTAATGAAATAATGACAACATATTTATTAATGGGAAAGACAGAAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAATAATGACAACATATTTATTAATGGGAAAGACAGAAGGAAAT  550

seq1  TCACATCTACTTCTGTCTCAAGCAGAGGCACAAGTCTGTTCTCTTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTACTTCTGTCTCAAGCAGAGGCACAAGTCTGTTCTCTTACACT  600

seq1  GTACTTGCTAAGTTCTAGATCACCCAGGTTGCTGATAGTCAGATACCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCTAAGTTCTAGATCACCCAGGTTGCTGATAGTCAGATACCATT  650

seq1  TGCAGTGCTGCTACTGAACTCTTTCATCGGTTTGTTTTTTTGTTGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCTGCTACTGAACTCTTTCATCGGTTTGTTTTTTTGTTGTTGTT  700

seq1  GTCATTGTTGTTGTTAATCTACTGTGAGTGCAGAATTTATTCATGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTTGTTGTTAATCTACTGTGAGTGCAGAATTTATTCATGGCTTC  750

seq1  TTA-TTGATTTATCATTTAGATATAGCTTAGCAAATTCTTTAAAAAATTA  799
      ||| |||||||||||||||||||||||||||||| ||||||||||| | |
seq2  TTATTTGATTTATCATTTAGATATAGCTTAGCAATTTCTTTAAAAATTAA  800

seq1  TTCTGGATTCCTAAGCAT-CCTAGGATTTTGTCATTAGATTTTTGGAAGA  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGGATTCCTAAGCATCCCTAGGATTTTGTCATTAGATTTTTGGAAGA  850

seq1  AATA-TACTTGG-TGCGGGTATT-CAGAATC-TCTTTGCAAAAAAATTAA  894
      |||| ||||||| |||||||||| ||||||| ||||||| ||||||||||
seq2  AATATTACTTGGTTGCGGGTATTCCAGAATCTTCTTTGC-AAAAAATTAA  899

seq1  GTGT-GTGTGTGTATCTACCTGAAT-ATACATTTATGCTTATAGGCAACT  942
      |||| ||||| || |||| |||||| |||||||| |||||||||||||||
seq2  GTGTGGTGTGGGTTTCTA-CTGAATAATACATTTTTGCTTATAGGCAACT  948

seq1  ATGCTTCATTTGGAAATTTCATGGACACATTTTTACTTCTACATATGTTT  992
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  ATGCTTCATTT-GAAATTTCATGGACACA-TTTTACTTCTACATATGTTT  996

seq1  CTTTATTGTTTTCTTGTGCTGTTTTCTTTCAAGGAAAGTTGTGTTCCATT  1042
      ||| |||| |||||||||||||||   ||| ||||||| || |||||| |
seq2  CTTAATTG-TTTCTTGTGCTGTTT--CTTCCAGGAAAG-TGGGTTCCA-T  1041

seq1  ATTTCTGACAGTAAGTTGGTAA  1064
      ||||||||| ||||||||||||
seq2  ATTTCTGACCGTAAGTTGGTAA  1063