BAC Information

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BAC

Clone NameB6Ng01-045H01
Chromosome6 (Build37)
Map Location 143,655,099 - 143,768,583
singlet/doubletdoublet
Overlap genenone
Upstream geneCmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream geneSox5, 4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045H01.bB6Ng01-045H01.g
ACCDH870895DH870896
length9951,012
definitionDH870895|Mus musculus domesticus DNA, BAC clone: B6Ng01-045H01, 5' end.DH870896|Mus musculus domesticus DNA, BAC clone: B6Ng01-045H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,767,591 - 143,768,583)(143,655,099 - 143,656,120)
sequence
gaattcatctttcttgcttttgtatcattctccaagttgcatgtactttg
aataatattattgtggcactgaatttttactgtcaatatctagcattctt
atttataagagcaattccttgacaaattttaaatgacaaaggactttaat
ggcctcagcaggatcattactaacctctccaagtgacagatactgaactt
gataaacgatcccagagccggacaaggtatggccttccttctgcccctga
ctcaagtgcccttccaggacagacttctaagttaaccaacctaatgtgaa
taagcaatttgtatatgttgtttaatctttcctcaaaagatatagatgca
acttttaacccttagttttttgagaaattgagctcaacaaccaagacaca
attcttactattaggccaaagaaggaaagcaacctagccctgtaaccagc
aagggttttcctactgagattcagcaagacacactgaaaatggcttttaa
gggggctgtttctgggggtctccactttcttcacctgggaccaaggctac
ttctaaatgggtggcttttgagaggaagtccaaaatgatgggaccatagt
tactattcaccctccctcaggaagtaccaccaggactacggagaggaaca
gtggtgaactaaagtagaagtgattttttttttaaattctcaaatgttct
tttgtctctttactgatagaaatgaagttgtatgtgggaggtgggtagtg
ccaccataacctgctttatttctgctgaatgagggaggccaatatattta
tcccatgaatggggaggaaattacacagacaactttctgggatgacaata
aagacatccttgacagcaagcacaaaacagtggcacaacttttcctttta
tattttcccagggggaaaaaatctgaatttaattgacatatgaagttaaa
tgacgacaaatgctttatttgttaagcatcttcaagcctttctga
gaattctcaggctgggttgggtgcctggcagagacattaggagcttccaa
agcactaattgatttaacagcggtttaaaacaatgctggccattgtcagg
gaagctcctttgtcgtattaaatcaagtttctcgagatgaattgcttgct
aaccacattccatgtaaagatctcaagggctgtttactgttccacaattt
atgatcgtcttgttagaggactacacatcagtttccctcgagtcgaggca
gaagcaaagacaaatagcatgcaaactatattgaacaattcattatatta
tattgtggaaccctcagcacagtgtggagataacccttttatgcatgctg
ccttattgaacagtaatcactctgtaatgctttagatatttaaatcatat
ttataataacacatattaatgtaacatcctctataaagttctcaggcatt
ttatgaggaatataaaccatggaaaaatacaaaattttaaaatgcagaca
tacctaccctggggtctttgaggcaacctaatgaggaatatatacaaaat
cccaggctgacagtttcactatttaagtagcatgtaggataactcaaaca
catttaagatattgccggctatggacacattctttatctaaatatttggc
caggttgcgggcaggcttattttcatttttactgttatgggtaggaagga
gggaacgattaaaaatgtttagaacatttttaatcaaagctttcaaatcc
atatacctgaagatcaatcacagatttaagttcacatactctataaatga
catttattagagccgtggggtttattttaaggcaaatgaaggcatttatc
ttgggtgacttgcctggatctcatagagcgtttatgtctgagtctaatgg
ataatttagtatttgcctgtttatcctgaaggaaaataaataatcttggg
ttcaaaagatgcttttctaggttcatgaggtatccttttcacagtagagg
atagtcccgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143767591_143768583
seq2: B6Ng01-045H01.b_37_1031 (reverse)

seq1  TCAGAAAGCCTTGAAGATGCTTTACAAATAAAGCATTTTGTCCATCATTT  50
      |||||||| ||||||||||||| |||||||||||| ||||| | ||||||
seq2  TCAGAAAGGCTTGAAGATGCTTAACAAATAAAGCA-TTTGT-CGTCATTT  48

seq1  AACTTCATCTGTCATTTAAATACTGATTTTTTCCCCCTGGGAAAA-ATAA  99
      |||||||| ||||| |||||| | ||||||||||||||||||||| ||||
seq2  AACTTCATATGTCAATTAAATTCAGATTTTTTCCCCCTGGGAAAATATAA  98

seq1  AAGAGAAAGTTGTGGCACTGTTTTGTGCTTGCTGTCAAGGATGTCTTTAT  149
      |||  ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGTTGTGCCACTGTTTTGTGCTTGCTGTCAAGGATGTCTTTAT  148

seq1  TGTCATCCCAG-AAGTTGTCTGTGTAATTTCCTCCCCATTCATGGGAT-A  197
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TGTCATCCCAGAAAGTTGTCTGTGTAATTTCCTCCCCATTCATGGGATAA  198

seq1  ATATATTGGCCTTCCTCATTCAGCAG-AATAAAGCAGGTTATGGTGGCAC  246
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ATATATTGGCCTCCCTCATTCAGCAGAAATAAAGCAGGTTATGGTGGCAC  248

seq1  TACCCACCTCCCACATACAACTTCATTTCTATCAGTAAAGAGACAAAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCTCCCACATACAACTTCATTTCTATCAGTAAAGAGACAAAAGA  298

seq1  ACATTTGAGAATTTAAAAAAAAAATCACTTCTACTTTAGTTCACCACTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAGAATTTAAAAAAAAAATCACTTCTACTTTAGTTCACCACTGT  348

seq1  TCCTCTCCGTAGTCCTGGTGGTACTTCCTGAGGGAGGGTGAATAGTAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCGTAGTCCTGGTGGTACTTCCTGAGGGAGGGTGAATAGTAACT  398

seq1  ATGGTCCCATCATTTTGGACTTCCTCTCAAAAGCCACCCATTTAGAAGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCATCATTTTGGACTTCCTCTCAAAAGCCACCCATTTAGAAGTA  448

seq1  GCCTTGGTCCCAGGTGAAGAAAGTGGAGACCCCCAGAAACAGCCCCCTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCCCAGGTGAAGAAAGTGGAGACCCCCAGAAACAGCCCCCTTA  498

seq1  AAAGCCATTTTCAGTGTGTCTTGCTGAATCTCAGTAGGAAAACCCTTGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTTTCAGTGTGTCTTGCTGAATCTCAGTAGGAAAACCCTTGCT  548

seq1  GGTTACAGGGCTAGGTTGCTTTCCTTCTTTGGCCTAATAGTAAGAATTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGGCTAGGTTGCTTTCCTTCTTTGGCCTAATAGTAAGAATTGT  598

seq1  GTCTTGGTTGTTGAGCTCAATTTCTCAAAAAACTAAGGGTTAAAAGTTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTTGTTGAGCTCAATTTCTCAAAAAACTAAGGGTTAAAAGTTGC  648

seq1  ATCTATATCTTTTGAGGAAAGATTAAACAACATATACAAATTGCTTATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATCTTTTGAGGAAAGATTAAACAACATATACAAATTGCTTATTC  698

seq1  ACATTAGGTTGGTTAACTTAGAAGTCTGTCCTGGAAGGGCACTTGAGTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGTTGGTTAACTTAGAAGTCTGTCCTGGAAGGGCACTTGAGTCA  748

seq1  GGGGCAGAAGGAAGGCCATACCTTGTCCGGCTCTGGGATCGTTTATCAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAAGGAAGGCCATACCTTGTCCGGCTCTGGGATCGTTTATCAAG  798

seq1  TTCAGTATCTGTCACTTGGAGAGGTTAGTAATGATCCTGCTGAGGCCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATCTGTCACTTGGAGAGGTTAGTAATGATCCTGCTGAGGCCATT  848

seq1  AAAGTCCTTTGTCATTTAAAATTTGTCAAGGAATTGCTCTTATAAATAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTTTGTCATTTAAAATTTGTCAAGGAATTGCTCTTATAAATAAG  898

seq1  AATGCTAGATATTGACAGTAAAAATTCAGTGCCACAATAATATTATTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGATATTGACAGTAAAAATTCAGTGCCACAATAATATTATTCAA  948

seq1  AGTACATGCAACTTGGAGAATGATACAAAAGCAAGAAAGATGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGCAACTTGGAGAATGATACAAAAGCAAGAAAGATGAATTC  995

seq1: chr6_143655099_143656120
seq2: B6Ng01-045H01.g_68_1079

seq1  GAATTCTCAGGCTGGGTTGGGTGCCTGGCAGAGACATTAGGAGCTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGCTGGGTTGGGTGCCTGGCAGAGACATTAGGAGCTTCCAA  50

seq1  AGCACTAATTGATTTAACAGCGGTTTAAAACAATGCTGGCCATTGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAATTGATTTAACAGCGGTTTAAAACAATGCTGGCCATTGTCAGG  100

seq1  GAAGCTCCTTTGTCGTATTAAATCAAGTTTCTCGAGATGAATTGCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCTTTGTCGTATTAAATCAAGTTTCTCGAGATGAATTGCTTGCT  150

seq1  AACCACATTCCATGTAAAGATCTCAAGGGCTGTTTACTGTTCCACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATTCCATGTAAAGATCTCAAGGGCTGTTTACTGTTCCACAATTT  200

seq1  ATGATCGTCTTGTTAGAGGACTACACATCAGTTTCCCTCGAGTCGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCGTCTTGTTAGAGGACTACACATCAGTTTCCCTCGAGTCGAGGCA  250

seq1  GAAGCAAAGACAAATAGCATGCAAACTATATTGAACAATTCATTATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGACAAATAGCATGCAAACTATATTGAACAATTCATTATATTA  300

seq1  TATTGTGGAACCCTCAGCACAGTGTGGAGATAACCCTTTTATGCATGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGAACCCTCAGCACAGTGTGGAGATAACCCTTTTATGCATGCTG  350

seq1  CCTTATTGAACAGTAATCACTCTGTAATGCTTTAGATATTTAAATCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTGAACAGTAATCACTCTGTAATGCTTTAGATATTTAAATCATAT  400

seq1  TTATAATAACACATATTAATGTAACATCCTCTATAAAGTTCTCAGGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAACACATATTAATGTAACATCCTCTATAAAGTTCTCAGGCATT  450

seq1  TTATGAGGAATATAAACCATGGAAAAATACAAAATTTTAAAATGCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGAATATAAACCATGGAAAAATACAAAATTTTAAAATGCAGACA  500

seq1  TACCTACCCTGGGGTCTTTGAGGCAACCTAATGAGGAATATATACAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCCTGGGGTCTTTGAGGCAACCTAATGAGGAATATATACAAAAT  550

seq1  CCCAGGCTGACAGTTTCACTATTTAAGTAGCATGTAGGATAACTCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGACAGTTTCACTATTTAAGTAGCATGTAGGATAACTCAAACA  600

seq1  CATTTAAGATATTGCCGGCTATGGACACATTCTTTATCTAAATATTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGATATTGCCGGCTATGGACACATTCTTTATCTAAATATTTGGC  650

seq1  CAGGTTGCGGGCAGGCTTATTTTCATTTTTACTGTTATGGGTAGGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCGGGCAGGCTTATTTTCATTTTTACTGTTATGGGTAGGAAGGA  700

seq1  GGGAACGATTAAAAATGTTTAGAACATTTTTAATCAAAGCTTTCAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGATTAAAAATGTTTAGAACATTTTTAATCAAAGCTTTCAAATCC  750

seq1  ATATACCTGAAGATCAATCACAGATTTAAGTTCACATACTCTATAAAATG  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATACCTGAAGATCAATCACAGATTTAAGTTCACATACTCTAT-AAATG  799

seq1  ACA-TTATTAGAGCCGTGGGGTTAATTTTAAGGCAAATGAAGGCATTTAT  849
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATTTATTAGAGCCGTGGGGTTTATTTTAAGGCAAATGAAGGCATTTAT  849

seq1  CTTGGGGTGACTTGCCTGGATCTCATAGAGCGGTTTATGTCTGAGGTCTA  899
      ||| ||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CTT-GGGTGACTTGCCTGGATCTCATAGAGC-GTTTATGTCTGA-GTCTA  896

seq1  ATGGATAATTTAGTAATTTGCCTGTTTATCCTGAAGG-AAATAAATAATC  948
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  ATGGATAATTTAGT-ATTTGCCTGTTTATCCTGAAGGAAAATAAATAATC  945

seq1  TTGGGGTTCCAAAAGGATGCTTTTCTAGGGTTCCATGAGGATATTCTTTT  998
      || ||||||  ||| ||||||||||||||  | ||||||| ||| |||||
seq2  TT-GGGTTC--AAAAGATGCTTTTCTAGG--TTCATGAGG-TATCCTTTT  989

seq1  CACAGTATGAGGATAGTCCCGCAG  1022
      ||||||| ||||||||||||||||
seq2  CACAGTA-GAGGATAGTCCCGCAG  1012