BAC Information

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BAC

Clone NameB6Ng01-045L22
Chromosome6 (Build37)
Map Location 118,698,029 - 118,815,004
singlet/doubletdoublet
Overlap geneCacna1c
Upstream geneEG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L22.bB6Ng01-045L22.g
ACCDH871113DH871114
length998113
definitionDH871113|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L22, 5' end.DH871114|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,813,977 - 118,815,004)(118,698,029 - 118,698,138)
sequence
gaattcttccttcagaggccgggtgagtaaggtcattatgacaacagcaa
cggtgtgtacgctccgacggatgagaggcggccacactttcagttttgaa
caacaaatgaacagattaagatcagagcaagcacaagtaagagaacaaat
agcaagtcaccgacaggaagtaaatcttcatcaaatcggacttacaagca
tccagcagaaactggctgggggagcggaggccgtcaagtggagttccacg
tccagctcgatctcaatggatgagcttcccaattctcttttccaccacag
gcatctttataccacgaggccagcagtagcttccgctggaaatagtttgc
actctagctgacatcaagggcgtactgtctttaaagacctaactgtttgc
tcttttcccctctccctgttggagagccaggagcccagcctgatctggat
caggggagtttgaaagagaccaggaagaacatccttgctcccagagctca
cgcttaacaagcttaaacagcacgtgataatttacctacacacacacaca
cacacacacacacacacacacacacacaccccaaaccacaacaacagcag
cagcatgttctggagcacacagcaaaattgttttctgtgtctagggagtt
tacacatgcctatagtcatactactctgaagacgactgaggcaggaggat
ttcaagagacccaagagttcatgcctggagaacatagtaagagcctggtt
tccttccttccttccttccatccatacaaccttccttccttcttcctttc
ttcttcttctttcttcgtctttcttcttcttcaccttcttcagaagccta
gttaagcttctgcccagctcatggatcagaattcctagaagagaaaccag
ggtgcatatctaatcaatgagaatgctatgatttggacttagggtctcac
aggtcagtattaacactcagggtcccattggagctatggaacctttga
atctaacatgagtaaaatcaaagaagtaagcaaatgtatgtatgtatgta
tgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtggatggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118813977_118815004
seq2: B6Ng01-045L22.b_46_1043 (reverse)

seq1  TCAAAGGTTCCATTAGCTCCCAATGGTGAACCCTGAGTGTCTAATACTAG  50
      |||||||||||| ||||| ||||||  | ||||||||||| |||||||  
seq2  TCAAAGGTTCCA-TAGCT-CCAATG--GGACCCTGAGTGT-TAATACT--  43

seq1  AACCTGTGGAGGACCCCTAAGTTCCAAATCATAGCATTTCTCATTGATTT  100
       |||||| |||   ||||||| |||||||||||||| |||||||||| ||
seq2  GACCTGT-GAG--ACCCTAAG-TCCAAATCATAGCA-TTCTCATTGA-TT  87

seq1  AGATATGCCCCCTGGTTTCTCTTCTAGGAATTCTGATCCATGAAGCCTGG  150
      |||||||| ||||||||||||||||||||||||||||||||||   ||||
seq2  AGATATGCACCCTGGTTTCTCTTCTAGGAATTCTGATCCATGA--GCTGG  135

seq1  GCCAGAAGCTTAAATTAGGCTTCTAGAAAGAAAGAGAGAAAGAAAGAAAG  200
      | ||||||||| || |||||||||   ||||| | ||  |||     |||
seq2  G-CAGAAGCTT-AACTAGGCTTCT--GAAGAAGGTGAAGAAG-----AAG  176

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGA  250
      ||||  |  ||||||| |||||   |||||||||| ||||||||||||| 
seq2  AAAG--ACGAAGAAAG-AAGAA--GAAGAAAGGAA-GAAGGAAGGAAGGT  220

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAACCAGGCTCTTACTATGTTCT  300
       | | ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATGGAAGGAAGGAAGGAAGGAAACCAGGCTCTTACTATGTTCT  270

seq1  CCAGGCCTGAACTCTTGGGTCTCTTGAAATCCTCCTGCCTCAGTCGTCTT  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGAACTCTTGGGTCTCTTGAAATCCTCCTGCCTCAGTCGTCTT  320

seq1  CAGAGTAGTATGACTATAGGCATGTGTAAACTCCCTAGACACAGAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGTATGACTATAGGCATGTGTAAACTCCCTAGACACAGAAAACA  370

seq1  ATTTTGCTGTGTGCTCCAGAACATGCTGCTGCTGTTGTTGTGGTTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTGTGTGCTCCAGAACATGCTGCTGCTGTTGTTGTGGTTTGGGG  420

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTAAATT  470

seq1  ATCACGTGCTGTTTAAGCTTGTTAAGCGTGAGCTCTGGGAGCAAGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTGCTGTTTAAGCTTGTTAAGCGTGAGCTCTGGGAGCAAGGATGT  520

seq1  TCTTCCTGGTCTCTTTCAAACTCCCCTGATCCAGATCAGGCTGGGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGTCTCTTTCAAACTCCCCTGATCCAGATCAGGCTGGGCTCCT  570

seq1  GGCTCTCCAACAGGGAGAGGGGAAAAGAGCAAACAGTTAGGTCTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCAACAGGGAGAGGGGAAAAGAGCAAACAGTTAGGTCTTTAAAG  620

seq1  ACAGTACGCCCTTGATGTCAGCTAGAGTGCAAACTATTTCCAGCGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACGCCCTTGATGTCAGCTAGAGTGCAAACTATTTCCAGCGGAAGC  670

seq1  TACTGCTGGCCTCGTGGTATAAAGATGCCTGTGGTGGAAAAGAGAATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGGCCTCGTGGTATAAAGATGCCTGTGGTGGAAAAGAGAATTGG  720

seq1  GAAGCTCATCCATTGAGATCGAGCTGGACGTGGAACTCCACTTGACGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCATCCATTGAGATCGAGCTGGACGTGGAACTCCACTTGACGGCC  770

seq1  TCCGCTCCCCCAGCCAGTTTCTGCTGGATGCTTGTAAGTCCGATTTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCCCCCAGCCAGTTTCTGCTGGATGCTTGTAAGTCCGATTTGATG  820

seq1  AAGATTTACTTCCTGTCGGTGACTTGCTATTTGTTCTCTTACTTGTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTACTTCCTGTCGGTGACTTGCTATTTGTTCTCTTACTTGTGCTT  870

seq1  GCTCTGATCTTAATCTGTTCATTTGTTGTTCAAAACTGAAAGTGTGGCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATCTTAATCTGTTCATTTGTTGTTCAAAACTGAAAGTGTGGCCG  920

seq1  CCTCTCATCCGTCGGAGCGTACACACCGTTGCTGTTGTCATAATGACCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATCCGTCGGAGCGTACACACCGTTGCTGTTGTCATAATGACCTT  970

seq1  ACTCACCCGGCCTCTGAAGGAAGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  ACTCACCCGGCCTCTGAAGGAAGAATTC  998

seq1: chr6_118698029_118698138
seq2: B6Ng01-045L22.g_73_182

seq1  ATCTAACATGAGTAAAATCAAAGAAGTAAGCAAATGTATGTATGTATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATGAGTAAAATCAAAGAAGTAAGCAAATGTATGTATGTATGTA  50

seq1  TGTATGTATGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGGATGGA  110
      ||||||||||
seq2  TGTGGATGGA  110