BAC Information

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BAC

Clone NameB6Ng01-046I09
Chromosome6 (Build37)
Map Location 13,186,689 - 13,187,746
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467
Downstream geneGm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046I09.bB6Ng01-046I09.g
ACCDH871658DH871659
length1,0391,206
definitionDH871658|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I09, 5' end.DH871659|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttactatcaaatttgatcatttgaatatggaaaaataactaa
aagttaacaaataaattccggaagactaggaacttattttcaaaagtgca
aatattagcatgttaataaattaaaagcaaattttaaagtggttaatgaa
attaaatttgcttcaacaatgtgattttaaatatgcttttcagtggtact
tttctttggaatgaagttgaaatagtgcgtaacttactctttcagcaagt
atctggacacagcaagtaacactgagacatttcaagactatgttctaaag
cgcttttgaatgcagtgtctgactagtaatgttgagggctctgtttgatt
tagattctttcagaagctgtaaatgaaatgctgtagcaggtgacgatgct
atgtgacactctggctttgtttatgtgatttctgtattcaattcttccca
aatcacaaagcatttgaacctcaagattataatttgtaccacaatgcatg
ctttgtatctccaagtacattaggtttggaaaacattctaaaagatgttt
gtaaatatagattttgttctgctattttttttaactttacatcccaatat
catcttcctctccctcctcgactcccagtcctttgctctcatctcccctc
ctccaccccaactcccatagtatagtcttttcttctcagaaaatgggagg
ccttccatggatatcaacccattttggcaaatccagttacagtagaacta
ggtgcatcttctcctgtagtgtcaaggaaaggcagcacaataagggaaag
agatggaaagacaggcaacagagtaggcaatagcccctgctccttctgtt
agagttccacatgaagatcaagctacacaactgttacatatgtgcatagg
tccatcccatgcgtgctgtcttgtggtgttcagtctctctcagccctatg
ggcccatgtagtgatgtgtagctttctgtgtatcctgacctctatgactc
tacatctcctccccctcttgatagttgcccagctccttt
gaattcaactctccctagcttcatttctccagtcataactccagcttctt
accatggctttgaaacagttcatgtattatgaatctacagagtatgtata
tgcatgctcagattttgatgggatgtgaaagtaaataaataggcaggttt
ttttttaattattgtaggcagatttagtgtaactccactggaaatgtacc
ttatttttaacaaaggaagaaaactacacattgtagaaagtaagactcct
tcagtaaatagtgttgtggaaattggatagctatggaagaaaacaaacta
gattctgtttgcactcacaggtaaaaatgaactcgattgtatcaaaagct
taaatgtaagaacccacaatatgaaactgctcagaataaatgaaggagaa
agctgtagggcactgagcacatattgctatgaacagatccttaaaagaca
aaggaaaaaaaaaaacttgaaaagtccgatgacaacaaagtcacttctat
gcagaaaaagccatgaccagtggggctgccaagatgacttagtgggcaaa
aagccttcccacccagtctgataatctgagttctatttctgagattcata
tgatagaaggagagaactgattcatgcaagttgtactctgacctctatat
gtgtatgaccaatacatgcataaataaataaaaaacctaactgaatttaa
aatttaacaaaacaatgaaatttatcaattaactaaagtgacaacctaca
gtatgagacaaaatattcacaaatttcatcaaatgcaaaacattgtcgac
tcgagccccgggctaccttgccagcaggagtcgcctgacacccacaaggg
ccaacacaggactcccacaggatcctaaagacctctggtgagtggaacac
agcgctgccccaatcctatcgtgcggaacctgagactggtggtacatagg
gagcaggctacccggcatgattctggggcacagccctttccgctcactcg
agcccaggctacttgcagcgagtcgctgacacctgcagggcccaccagat
tccacggatctagactctagtggatgaaccaacttctgcagagtctggtt
cgacacaaaatactgggtacttctcagaaagacctgcctgcgagaactgc
atgtactaaatagtgtctacctctagtcgtctataaggactcacgagatc
gcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13186689_13187746
seq2: B6Ng01-046I09.b_48_1086

seq1  GAATTCTTTTACTATCAAATTTGATCATTTGAATATGGAAAAATAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTATCAAATTTGATCATTTGAATATGGAAAAATAACTAA  50

seq1  AAGTTAACAAATAAATTCCGGAAGACTAGGAACTTATTTTCAAAAGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACAAATAAATTCCGGAAGACTAGGAACTTATTTTCAAAAGTGCA  100

seq1  AATATTAGCATGTTAATAAATTAAAAGCAAATTTTAAAGTGGTTAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGCATGTTAATAAATTAAAAGCAAATTTTAAAGTGGTTAATGAA  150

seq1  ATTAAATTTGCTTCAACAATGTGATTTTAAATATGCTTTTCAGTGGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTGCTTCAACAATGTGATTTTAAATATGCTTTTCAGTGGTACT  200

seq1  TTTCTTTGGAATGAAGTTGAAATAGTGCGTAACTTACTCTTTCAGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGAATGAAGTTGAAATAGTGCGTAACTTACTCTTTCAGCAAGT  250

seq1  ATCTGGACACAGCAAGTAACACTGAGACATTTCAAGACTATGTTCTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACACAGCAAGTAACACTGAGACATTTCAAGACTATGTTCTAAAG  300

seq1  CGCTTTTGAATGCAGTGTCTGACTAGTAATGTTGAGGGCTCTGTTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTGAATGCAGTGTCTGACTAGTAATGTTGAGGGCTCTGTTTGATT  350

seq1  TAGATTCTTTCAGAAGCTGTAAATGAAATGCTGTAGCAGGTGACGATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTTTCAGAAGCTGTAAATGAAATGCTGTAGCAGGTGACGATGCT  400

seq1  ATGTGACACTCTGGCTTTGTTTATGTGATTTCTGTATTCAATTCTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACACTCTGGCTTTGTTTATGTGATTTCTGTATTCAATTCTTCCCA  450

seq1  AATCACAAAGCATTTGAACCTCAAGATTATAATTTGTACCACAATGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAAGCATTTGAACCTCAAGATTATAATTTGTACCACAATGCATG  500

seq1  CTTTGTATCTCCAAGTACATTAGGTTTGGAAAACATTCTAAAAGATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTCCAAGTACATTAGGTTTGGAAAACATTCTAAAAGATGTTT  550

seq1  GTAAATATAGATTTTGTTCTGCTATTTTTTTTAACTTTACATCCCAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAGATTTTGTTCTGCTATTTTTTTTAACTTTACATCCCAATAT  600

seq1  CATCTTCCTCTCCCTCCTCGACTCCCAGTCCTTTGCTCTCATCTCCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTCTCCCTCCTCGACTCCCAGTCCTTTGCTCTCATCTCCCCTC  650

seq1  CTCCACCCCAACTCCCATAGTATAGTCTTTTCTTCTCAGAAAATGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCCAACTCCCATAGTATAGTCTTTTCTTCTCAGAAAATGGGAGG  700

seq1  CCTTCCATGGATATCAACCCATTTTGGCAAATCCAGTTACAGTAGAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATGGATATCAACCCATTTTGGCAAATCCAGTTACAGTAGAACTA  750

seq1  GGTGCATCTTCTCCTGTAGTGTCAAGGAAAGGCAGCACAATAAGGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATCTTCTCCTGTAGTGTCAAGGAAAGGCAGCACAATAAGGGAAAG  800

seq1  AGATGGAAAGACAGGCAACAGAGTAGGCAATAGCCCCTGCTCCTTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAGACAGGCAACAGAGTAGGCAATAGCCCCTGCTCCTTCTGTT  850

seq1  AGGAGTTCCACATGAAGATCAAGCTACACAACTGTTACATATGTGCATAG  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GAGTTCCACATGAAGATCAAGCTACACAACTGTTACATATGTGCATAG  899

seq1  GTCCATCCCATGCGTGCTGTCTTGTTGGTGGTTCAGTCTCTCTCAGCCCC  950
      |||||||||||||||||||||||| |||| |||||||||||||||| |||
seq2  GTCCATCCCATGCGTGCTGTCTTG-TGGT-GTTCAGTCTCTCTCAG-CCC  946

seq1  TATGGGCCCATGTTAGTTGATTGTGTAGGCTTTCTTGTGGTATCCTTGAC  1000
      |||||||||||| ||| ||| |||||| |||||| ||| |||||| ||||
seq2  TATGGGCCCATG-TAG-TGA-TGTGTA-GCTTTC-TGT-GTATCC-TGAC  989

seq1  CTCTATGACTCCTACAATCCTTCCTCCCCCTCTTTGATAGGTTTGCCCAA  1050
      |||||||||| |||| |||  ||||||||||| |||||||  |||||| |
seq2  CTCTATGACT-CTAC-ATC--TCCTCCCCCTC-TTGATAG--TTGCCC-A  1031

seq1  GCTCCTTT  1058
      ||||||||
seq2  GCTCCTTT  1039