BAC Information

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BAC

Clone NameB6Ng01-046N02
Chromosome6 (Build37)19 (Build37)
Map Location 18,835,427 - 18,835,96851,393,194 - 51,394,315
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N02.bB6Ng01-046N02.g
ACCDH871867DH871868
length9341,100
definitionDH871867|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N02, 5' end.DH871868|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(51,393,194 - 51,394,315)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatagtagttcc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtctattcttgatcttacaggacatgccattgctgtt
ctgttcaggaatttttcccctttgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tacccttgagaagatttttttgctaacctaggctttttgttattccagat
gaatttgcaaattgctccttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagatttgaagtttttatcat
acagatctttcacgtccttagttagagtcacgcc
gaattcacttaacatctacagcaaatgactattaccatgttcattctata
gactggtggactagctcttggagtgtgaggaatgaaattggtaatagcat
ccatcttacattgatcttcttcttacctaacagacatgattaacactgtt
tcattacccaacctccatgaagaagcgcagagggagagggtacgttttca
acattatggcatttaagggaagtggactttatacctagatcattgttcca
ggtttgcagctatgtcaaaggtcattgaataatcagggacctgccgagtg
gaatcagaggccttagcatcactcttgataaaattaaatatgtgtatcca
tctctttcccctctagtatgtatccagaaaggattgatttcattagtacg
ctaaactggaacatagaacttctaatactcttaaacttttccaggacaga
gccaacattaccttcaggtgaatgagaaactgcacatggctgcctctttc
catttactctttcccactagagtagcctagcctcacttaatccttcacag
cacctcagcaaaaccgttcctctctgccaaagcacgattcactgtggtga
aaccaagaggctctcagtcaataactctcagtccttgccaactccagacc
actggggtaaatggcatgaatttatttgcaactctaagggtgttattgaa
agtttttgtatgtttgtattttctaacttcatttaagttttacatcttgt
gaaacacaaatccagccatttgtgggttgttttgtagtgaattgcacgaa
actgccttgtttttttatactatgaaggtaaaagcaagacagtcaacttt
tttcccagagcatcatactttaaactgtatgattaaaaatcagatttcag
aggaaaagatgagtacttataaatctttacacctttgaagatgaatactc
atcagatataacacactttaaaaatgtaggcctcagtgatgaaaagaggt
taatatttgtttgttgttgttgttttatgtttgttattgaacagggtttc
ctcgttagtctagctgtcctgaactcatctttgagaccagctgcttgaac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-046N02.b_44_586 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATGGGCAAAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| ||| |||| || |  ||||| |||||||||||||||||||||||
seq2  ATGGCATGTCCTGTAAGATCAAGAATAGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGAACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr19_51393194_51394315
seq2: B6Ng01-046N02.g_67_1166

seq1  GAATTCACTTAACATCTACAGCAAATGACTATTACCATGTTCATTCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAACATCTACAGCAAATGACTATTACCATGTTCATTCTATA  50

seq1  GACTGGTGGACTAGCTCTTGGAGTGTGAGGAATGAAATTGGTAATAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGGACTAGCTCTTGGAGTGTGAGGAATGAAATTGGTAATAGCAT  100

seq1  CCATCTTACATTGATCTTCTTCTTACCTAACAGACATGATTAACACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTACATTGATCTTCTTCTTACCTAACAGACATGATTAACACTGTT  150

seq1  TCATTACCCAACCTCCATGAAGAAGCGCAGAGGGAGAGGGTACGTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCCAACCTCCATGAAGAAGCGCAGAGGGAGAGGGTACGTTTTCA  200

seq1  ACATTATGGCATTTAAGGGAAGTGGACTTTATACCTAGATCATTGTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGGCATTTAAGGGAAGTGGACTTTATACCTAGATCATTGTTCCA  250

seq1  GGTTTGCAGCTATGTCAAAGGTCATTGAATAATCAGGGACCTGCCGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAGCTATGTCAAAGGTCATTGAATAATCAGGGACCTGCCGAGTG  300

seq1  GAATCAGAGGCCTTAGCATCACTCTTGATAAAATTAAATATGTGTATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAGGCCTTAGCATCACTCTTGATAAAATTAAATATGTGTATCCA  350

seq1  TCTCTTTCCCCTCTAGTATGTATCCAGAAAGGATTGATTTCATTAGTACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCCCTCTAGTATGTATCCAGAAAGGATTGATTTCATTAGTACG  400

seq1  CTAAACTGGAACATAGAACTTCTAATACTCTTAAACTTTTCCAGGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGGAACATAGAACTTCTAATACTCTTAAACTTTTCCAGGACAGA  450

seq1  GCCAACATTACCTTCAGGTGAATGAGAAACTGCACATGGCTGCCTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTACCTTCAGGTGAATGAGAAACTGCACATGGCTGCCTCTTTC  500

seq1  CATTTACTCTTTCCCACTAGAGTAGCCTAGCCTCACTTAATCCTTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCTTTCCCACTAGAGTAGCCTAGCCTCACTTAATCCTTCACAG  550

seq1  CACCTCAGCAAAACCGTTCCTCTCTGCCAAAGCACGATTCACTGTGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGCAAAACCGTTCCTCTCTGCCAAAGCACGATTCACTGTGGTGA  600

seq1  AACCAAGAGGCTCTCAGTCAATAACTCTCAGTCCTTGCCAACTCCAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAGGCTCTCAGTCAATAACTCTCAGTCCTTGCCAACTCCAGACC  650

seq1  ACTGGGGTAAATGGCATGAATTTATTTGCAACTCTAAGGGTGTTATTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTAAATGGCATGAATTTATTTGCAACTCTAAGGGTGTTATTGAA  700

seq1  AGTTTTTGTATGTTTGTATTTTCTAACTTCATTTAAGTTTTACATCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGTATGTTTGTATTTTCTAACTTCATTTAAGTTTTACATCTTGT  750

seq1  GAAACACAAATCCAGCCATTTGTGGGTTGTTTTGTAGTGAATTGCACGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAAATCCAGCCATTTGTGGGTTGTTTTGTAGTGAATTGCACGAA  800

seq1  ACTGCCTTGTTTTTTTATACTATGAAGGTAAAAGCAAGACAGTCAACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTGTTTTTTTATACTATGAAGGTAAAAGCAAGACAGTCAACTTT  850

seq1  TTTCCCAGAGCATCATACTTAAAACTGTATGATTAAAAATCAGAATTCAG  900
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TTTCCCAGAGCATCATACTTTAAACTGTATGATTAAAAATCAGATTTCAG  900

seq1  AGGAAAAAGAATGAGTACTTATAAATCTTTACACCTTTGAAGATGAAATA  950
      |||||||   |||||||||||||||||||||||||||||||||||||   
seq2  AGGAAAA--GATGAGTACTTATAAATCTTTACACCTTTGAAGATGAA--T  946

seq1  ACTTCCATCAGATATAACACACTTTAAAAATGTAGGCCTCAGTGAATGAA  1000
      |||  ||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACT--CATCAGATATAACACACTTTAAAAATGTAGGCCTCAGTG-ATGAA  993

seq1  AAGAGGTTTAATATTTGTTTTGTTTGTTGTTTGTTTTTATTGTTTGTTTA  1050
      |||||| |||||||||||||   |||||| |||||||   ||||||||  
seq2  AAGAGG-TTAATATTTGTTT--GTTGTTG-TTGTTTT--ATGTTTGTT--  1035

seq1  TTTGAGACAGGGTTTCTCTGTTTAGCTCTGGCTGTCCTGGAACTCA-CTT  1099
       |||| |||||||||| ||  |||| ||| |||||||| ||||||| |||
seq2  ATTGA-ACAGGGTTTC-CTCGTTAG-TCTAGCTGTCCT-GAACTCATCTT  1081

seq1  TGTAGACCAGGCTGGCCTTGAAC  1122
      || |||||| ||||  |||||||
seq2  TG-AGACCA-GCTG--CTTGAAC  1100