BAC Information

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BAC

Clone NameB6Ng01-047D18
Chromosome6 (Build37)
Map Location 8,644,472 - 8,780,039
singlet/doubletdoublet
Overlap geneIca1
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047D18.bB6Ng01-047D18.g
ACCDH872154DH872155
length1,1241,122
definitionDH872154|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D18, 5' end.DH872155|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,778,880 - 8,780,039)(8,644,472 - 8,645,625)
sequence
gaacttaggaaatcatgtactgctattcctttgcaaatgagatgcatatt
acagccattaacataactgtatcgatctgacttcatgttttcagtggagt
gtagagtagaaatataaaactgacagataggagccaggtgaagacatggg
gttttcatgatgggtcatcaatcatggagcctcaataaaaagcatctgag
ataattgctgtgatctgcaaagagtatgtgatgtaagtttcatgaacatt
ctctttttttctttaatagaaaatcttgcacatcttacccagattgaatc
ttttcctggtagctcctttgatctctttttaaagaggtggtttaaagtag
gtcatttatcacataaaccctgagagatttcaaccacagccttggacctt
catgcttgaatcctactccagagatttagatttaattggcctgggtatgc
tggagtcgtcagacatttaaaagcttcccacgagagtctaatgggtgggc
agagatgagaaacactcctctaaacttcacattgtatacttgcatatttt
aatgcactgctgttttgctagtctcaatgttattgtaagtgggtttactc
cacagttcaacttttacattgtggggtgggggagctaaaaacacctcaca
gccaagcaaaagaaaaaccatagagaataaatgtacttgtgcccatcttt
gaattcataaatttcatggcaaaacttccaaaagtgatttttctattatt
tataattttaccttttattagatatagattagtttcatatagtgtattct
gatcatgattttctgtcccttaactactccaagactcattcaatctaaat
cattttctctctcccttcctctctctctctctcattagataacaaacagg
caacaacaaaatcatggatggtacaataaacagggaaaaggagccaaggg
ggaaaatacagaaacatgcacatcacacactcaaccataagaaatcccta
aaaaaatagaagcacaaaaaccataacctcagctgatgatctaggactaa
cttacaataagccatcttattgaccaatcctatctgaatggcctctagga
gtcgtctattggataaaatagatc

gaattctcagtttcctcaactttttctccccagcaagattaggaacattt
ggaaaatccttccctcagagtgggctgaaagcctctgcatctgcccagag
gagagagagatggctccagtttcttagagctcatccaagggatggtcttt
tctttcctcctcttcagagaggcagaaatattccatagactcacaaatgc
tgtaaaagcgaacacaggagaagaaatgtcaacagaactggaaaagttac
catagggaaccgattacaataaggcaacacagttagcctttctggattta
atgaaatatggtcaactacactggaatgttctggtgccccctggaggatt
ctgaaacctaacgagactggttatttagtacctttctttggatgtctctg
aaaaccttcaagaagcaggcaatgtgtttcttctccctggttcaaacaga
cttaacccggctcagccacaggcaaagggacaaaggcacaaaccctaaaa
ttcaaatggctttaaccaccatacgtttgtcgttagaaatggaggctctt
ggatcagaagcagagcctatttttggctcatgaagtttatacatccagcg
gtgcaaagttcacagttgcatgtgtgatctctcaatttctgggctgagtg
tttagtgaacaaggaagtttgcttctgcgagtcttgctttgtctagtgca
ggaaagttaaacattctggaaagttaaacatttagcttctaaatttttac
tgctctgggaatcctctgggacatgactccagtatgccgatgactaaatg
gccgtcagtgttgtttattcatagtcacagaacagcccgcagatgtaagg
aaccattgtgcaactccactatgcattcaggatatagctgccatctgccc
tcaaccctaacttactgcagatcattacatggatgcatagtagagcgata
ctatccactcttagcactgggctgaagatgtggacagattcacagacttg
caagattatgtcacacacagtaaatatatacgatgctacattatgataca
tgtttatttaaaatactgccatttaataataatctatcggtctacattaa
atcacgcttttatactttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8778880_8780039
seq2: B6Ng01-047D18.b_55_1178 (reverse)

seq1  GATCTATTTTATCCACATTAGACAGACTTCCTAGTAGCCCATTCAG-TAG  49
      |||||||||||||  || ||||| ||| |||||| || |||||||| |||
seq2  GATCTATTTTATC--CAATAGAC-GAC-TCCTAG-AGGCCATTCAGATAG  45

seq1  GATTTGTCAATAATGATTGGCTTATTGGTAAAGTTAGTCCTTATGATCAA  99
      |||| |||||||| || ||||||||||   |||||||||||   |||| |
seq2  GATTGGTCAATAA-GA-TGGCTTATTG--TAAGTTAGTCCT--AGATC-A  88

seq1  TCAGCTGAGTTTATGGTTTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTA  149
      ||||||||| |||||||||    ||||  || | |||||||         
seq2  TCAGCTGAGGTTATGGTTT----TTGTGCTTCTATTTTTTT---------  125

seq1  TGGGATTTCTGTATGTGTGAGTGTGTGATTGTGCATGTTTCTTGTATTTT  199
       ||||||||| ||||  ||||||||||| |||||||||||| ||||||||
seq2  AGGGATTTCT-TATGGTTGAGTGTGTGA-TGTGCATGTTTC-TGTATTTT  172

seq1  CCCCCCTTTGGCTCCCTTTTCCCTGTTTATTTTGTACCATTCCATTGATT  249
      |||||  |||||| |||||||||||||||  |||||||| |||| ||| |
seq2  CCCCC--TTGGCT-CCTTTTCCCTGTTTA--TTGTACCA-TCCA-TGA-T  214

seq1  TTTGTTGTTGCCTGTTTGTTATCTAATGAGAGAGAGAGAGAGGGAGGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGTTGTTGCCTGTTTGTTATCTAATGAGAGAGAGAGAGAGGAAGGGAG  264

seq1  AGAGAAAATGATTTAGATTTGAATGAGTCTTGGAGTAGTTAAGGGACAGA  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGATTTAGA-TTGAATGAGTCTTGGAGTAGTTAAGGGACAGA  313

seq1  AAATCATGATCAGAATACACTATATGAAACTAATCTATATCTAATAAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGATCAGAATACACTATATGAAACTAATCTATATCTAATAAAAG  363

seq1  GTAAAATTATAAATAATAGAAAAATCACTTTTGGAAGTTTTGCCATGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTATAAATAATAGAAAAATCACTTTTGGAAGTTTTGCCATGAAA  413

seq1  TTTATGAATTCAAAGATGGGCACAAGTACATTTATTCTCTATGGTTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATTCAAAGATGGGCACAAGTACATTTATTCTCTATGGTTTTTC  463

seq1  TTTTGCTTGGCTGTGAGGTGTTTTTAGCTCCCCCACCCCACAATGTAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGGCTGTGAGGTGTTTTTAGCTCCCCCACCCCACAATGTAAAA  513

seq1  GTTGAACTGTGGAGTAAACCCACTTACAATAACATTGAGACTAGCAAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACTGTGGAGTAAACCCACTTACAATAACATTGAGACTAGCAAAAC  563

seq1  AGCAGTGCATTAAAATATGCAAGTATACAATGTGAAGTTTAGAGGAGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCATTAAAATATGCAAGTATACAATGTGAAGTTTAGAGGAGTGT  613

seq1  TTCTCATCTCTGCCCACCCATTAGACTCTCGTGGGAAGCTTTTAAATGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTCTGCCCACCCATTAGACTCTCGTGGGAAGCTTTTAAATGTC  663

seq1  TGACGACTCCAGCATACCCAGGCCAATTAAATCTAAATCTCTGGAGTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACTCCAGCATACCCAGGCCAATTAAATCTAAATCTCTGGAGTAGG  713

seq1  ATTCAAGCATGAAGGTCCAAGGCTGTGGTTGAAATCTCTCAGGGTTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCATGAAGGTCCAAGGCTGTGGTTGAAATCTCTCAGGGTTTATG  763

seq1  TGATAAATGACCTACTTTAAACCACCTCTTTAAAAAGAGATCAAAGGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGACCTACTTTAAACCACCTCTTTAAAAAGAGATCAAAGGAGC  813

seq1  TACCAGGAAAAGATTCAATCTGGGTAAGATGTGCAAGATTTTCTATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAAAAGATTCAATCTGGGTAAGATGTGCAAGATTTTCTATTAAA  863

seq1  GAAAAAAAGAGAATGTTCATGAAACTTACATCACATACTCTTTGCAGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGAGAATGTTCATGAAACTTACATCACATACTCTTTGCAGATC  913

seq1  ACAGCAATTATCTCAGATGCTTTTTATTGAGGCTCCATGATTGATGACCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATTATCTCAGATGCTTTTTATTGAGGCTCCATGATTGATGACCC  963

seq1  ATCATGAAAACCCCATGTCTTCACCTGGCTCCTATCTGTCAGTTTTATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAAACCCCATGTCTTCACCTGGCTCCTATCTGTCAGTTTTATAT  1013

seq1  TTCTACTCTACACTCCACTGAAAACATGAAGTCAGATCGATACAGTTATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCTACACTCCACTGAAAACATGAAGTCAGATCGATACAGTTATG  1063

seq1  TTAATGGCTGTAATATGCATCTCATTTGCAAAGGAATAGCAGTACATGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTGTAATATGCATCTCATTTGCAAAGGAATAGCAGTACATGAT  1113

seq1  TTCCTAAGTTC  1160
      |||||||||||
seq2  TTCCTAAGTTC  1124


seq1: chr6_8644472_8645625
seq2: B6Ng01-047D18.g_65_1186

seq1  GAATTCTCAGTTTCCTCAACTTTTTCTCCCCAGCAAGATTAGGAACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTCCTCAACTTTTTCTCCCCAGCAAGATTAGGAACATTT  50

seq1  GGAAAATCCTTCCCTCAGAGTGGGCTGAAAGCCTCTGCATCTGCCCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATCCTTCCCTCAGAGTGGGCTGAAAGCCTCTGCATCTGCCCAGAG  100

seq1  GAGAGAGAGATGGCTCCAGTTTCTTAGAGCTCATCCAAGGGATGGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATGGCTCCAGTTTCTTAGAGCTCATCCAAGGGATGGTCTTT  150

seq1  TCTTTCCTCCTCTTCAGAGAGGCAGAAATATTCCATAGACTCACAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCCTCTTCAGAGAGGCAGAAATATTCCATAGACTCACAAATGC  200

seq1  TGTAAAAGCGAACACAGGAGAAGAAATGTCAACAGAACTGGAAAAGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGCGAACACAGGAGAAGAAATGTCAACAGAACTGGAAAAGTTAC  250

seq1  CATAGGGAACCGATTACAATAAGGCAACACAGTTAGCCTTTCTGGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGAACCGATTACAATAAGGCAACACAGTTAGCCTTTCTGGATTTA  300

seq1  ATGAAATATGGTCAACTACACTGGAATGTTCTGGTGCCCCCTGGAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATGGTCAACTACACTGGAATGTTCTGGTGCCCCCTGGAGGATT  350

seq1  CTGAAACCTAACGAGACTGGTTATTTAGTACCTTTCTTTGGATGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTAACGAGACTGGTTATTTAGTACCTTTCTTTGGATGTCTCTG  400

seq1  AAAACCTTCAAGAAGCAGGCAATGTGTTTCTTCTCCCTGGTTCAAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCAAGAAGCAGGCAATGTGTTTCTTCTCCCTGGTTCAAACAGA  450

seq1  CTTAACCCGGCTCAGCCACAGGCAAAGGGACAAAGGCACAAACCCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCGGCTCAGCCACAGGCAAAGGGACAAAGGCACAAACCCTAAAA  500

seq1  TTCAAATGGCTTTAACCACCATACGTTTGTCGTTAGAAATGGAGGCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGCTTTAACCACCATACGTTTGTCGTTAGAAATGGAGGCTCTT  550

seq1  GGATCAGAAGCAGAGCCTATTTTTGGCTCATGAAGTTTATACATCCAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAAGCAGAGCCTATTTTTGGCTCATGAAGTTTATACATCCAGCG  600

seq1  GTGCAAAGTTCACAGTTGCATGTGTGATCTCTCAATTTCTGGGCTGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGTTCACAGTTGCATGTGTGATCTCTCAATTTCTGGGCTGAGTG  650

seq1  TTTAGTGAACAAGGAAGTTTGCTTCTGCGAGTCTTGCTTTGTCTAGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAACAAGGAAGTTTGCTTCTGCGAGTCTTGCTTTGTCTAGTGCA  700

seq1  GGAAAGTTAAACATTCTGGAAAGTTAAACATTTAGCTTCTAAATTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTAAACATTCTGGAAAGTTAAACATTTAGCTTCTAAATTTTTAC  750

seq1  TGCTCTGGGAATCCTCTGGGACATGACTCCAGTATGCCGATGACTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGAATCCTCTGGGACATGACTCCAGTATGCCGATGACTAAATG  800

seq1  GCCGTCAGTGTTGTTTATTCCATAGTCACAGAACAGCCCGCAGATGTAAG  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCGTCAGTGTTGTTTATT-CATAGTCACAGAACAGCCCGCAGATGTAAG  849

seq1  GAACCATTGTGCAACTCCACTATGCATTCAGGATTATAGCTGCCATCTGC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAACCATTGTGCAACTCCACTATGCATTCAGGA-TATAGCTGCCATCTGC  898

seq1  CCTCAACCCTAACTTACTGCAAGATCATTACATGGATGCATAGTAAGAGC  950
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  CCTCAACCCTAACTTACTGC-AGATCATTACATGGATGCATAGT-AGAGC  946

seq1  GATACTATCCACTCTTAGCACTGGGCCTGAAAGATGTGGACCAAGATTCA  1000
      ||||||||||||||||||||||||| ||| |||||||||||  |||||||
seq2  GATACTATCCACTCTTAGCACTGGG-CTG-AAGATGTGGAC--AGATTCA  992

seq1  CCAGACTTGCAAAGAATTATGTCAACACACCAGTAAAATTATATTACGAT  1050
       |||||||||||   |||||||| ||||| |||||||  |||| ||||||
seq2  -CAGACTTGCAA--GATTATGTC-ACACA-CAGTAAA--TATA-TACGAT  1034

seq1  GCTTACATTATGAATACAATGTTTTATTTTATAATACTGCCCAATTCTAT  1100
      || ||||||||| |||| ||||||   |||| |||||||||  |||   |
seq2  GC-TACATTATG-ATAC-ATGTTT--ATTTAAAATACTGCC--ATT---T  1074

seq1  ATTAATATACTATC-GTCTAACAATTTTAATATCAACCGCTTTTATACTT  1149
      | |||||  ||||| |||| |||   |||| ||||  |||||||||||||
seq2  AATAATAATCTATCGGTCT-ACA---TTAA-ATCA--CGCTTTTATACTT  1117

seq1  TGTGT  1154
      |||||
seq2  TGTGT  1122


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