BAC Information

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BAC

Clone NameB6Ng01-047K01
Chromosome6 (Build37)13 (Build37)
Map Location 18,835,443 - 18,835,96894,007,131 - 94,007,273
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K01.bB6Ng01-047K01.g
ACCDH872439DH872440
length861675
definitionDH872439|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K01, 5' end.DH872440|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,443 - 18,835,968)(94,007,131 - 94,007,273)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattagatattagttcc
ctatccgatttgggataggtaagtatcctttcccaatctgttggtggcct
tttttgtcttattgacagtgtcttttgccttgcagaagctttgcaatttt
atgaggtcccatttatcaattctcaatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtacccatatcttcaaggcttttcccta
ctttctcctctataaatttcagtgtctctggttttatgtggagttccgta
atccacttagatttgaccttagtacaaggagataggaatggatcaatttg
cattcttctacactataaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcactataccaataccatgcagtttttattaaaattg
ctctgtagtacagctttaggtcaggcatgatgattccaccagaggttctt
tcatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatctgccgattgctctttctattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttgggcaagatagccatt
tttacaatgttgacccttccaatccatgagcatgggagatctttcatctc
tgagatcttct
gaattcttccttttatttatggtcatctcatatctgctgtggcatacttt
gttactgagtataaggtgaatttcagagaagaaaccatgaggtgctgaga
agagggataatcttttatgtttgggtaaaatgtcctgtagatgcctgtta
ggtccatatgtttcataacttctgttgattttattatttctctgttattt
tctgtctcaacatttcaattggtgagattggggtgttaaggaatcacact
attaatatgtgaggtccaatgcataattttgaccttcaggaatgttcctt
tttaaaatgtgggtgccctggattttgtcacataggcattcagaattgag
agttcatcttggtaaatttttttccattgatgagtagaaagtgtccttcc
acaactcctgtgattacatttggttaaaagtctattttattagacattgg
aatgcctacttctcctcatttcttgggtccatttgtttgaaaaaacaaca
acaacatcaaaaaaaaaaaaaaaaccaaaaatttttggcagcccttaact
ctgccataatatctatctttgttgctaaggggtgcttcttgtatgcagca
gatggatggatcatgtttttggatccattctcttagcctgtattttttgt
tttgttttgttttttgttgtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835443_18835968
seq2: B6Ng01-047K01.b_46_573 (reverse)

seq1  CAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCT  50

seq1  AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCA  100
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  AAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCA  100

seq1  CAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTC  150
      |||||||| |||||  ||||||||||||  ||| ||||||| | ||||||
seq2  CAACTGGTGGTTATAGTGTAGAAGAATGCAAATTGATCCATTCCTATCTC  150

seq1  CATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCA  200
      | |||||||||||||||||||||||||| | |||||| ||||||||||||
seq2  CTTGTACTAAGGTCAAATCTAAGTGGATTACGGAACTCCACATAAAACCA  200

seq1  GAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATAT  250
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GAGACACTGAAATTTATAGAGGAGAAAGTAGGGAAAAGCCTTGAAGATAT  250

seq1  GGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGA  299
      ||| | ||||||||| |||||||| |||||||||||||| |||||||| |
seq2  GGGTACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAA  300

seq1  GGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAG  349
      | | |||||| || ||||||||||| || ||| | ||||| |||||||||
seq2  GATTGAGAATTGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAG  350

seq1  GCAAAAGACACCGTCAATAAGAC-AAAAAGACCACCAACAGATTGGGAAA  398
      ||||||||||| ||||||||||| |||||| |||||||||||||||||||
seq2  GCAAAAGACACTGTCAATAAGACAAAAAAGGCCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  448
      ||||  |||||||||| ||||| ||||||| ||||||||| || ||||||
seq2  GGATACTTACCTATCCCAAATCGGATAGGGAACTAATATCTAATATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  498
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  526
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr13_94007131_94007273
seq2: B6Ng01-047K01.g_572_740 (reverse)

seq1  AAAAAACAACAAAAAAAAAAACAAAACAAAAAACAAA----ACAATAATC  46
      |||||||||||||||| |||||||||||||||| | |    |  | ||| 
seq2  AAAAAACAACAAAAAACAAAACAAAACAAAAAATACAGGCTAAGAGAAT-  49

seq1  ACTAGCCACAGCCCCTTAACCTTGTCCCTCCAGAACTG-TGAATTCAATG  95
         | ||| |       ||| |  ||| |||  | ||| || || |||  
seq2  -GGATCCAAA-------AACATGATCCATCC--ATCTGCTGCATACAAGA  89

seq1  TTCATTCTTT-----------TTTTTTTTTT-------TT----------  117
        ||  | ||           |   | || |       ||          
seq2  AGCACCCCTTAGCAACAAAGATAGATATTATGGCAGAGTTAAGGGCTGCC  139

seq1  ----TTTTTTTTTTTTTTTTTTTTTTTTGA  143
           |||||  ||||||||||||||||||
seq2  AAAAATTTTTGGTTTTTTTTTTTTTTTTGA  169