BAC Information

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BAC

Clone NameB6Ng01-047P13
Chromosome6 (Build37)4 (Build37)
Map Location 18,835,427 - 18,835,96838,126,532 - 38,127,656
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047P13.bB6Ng01-047P13.g
ACCDH872685DH872686
length9831,106
definitionDH872685|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P13, 5' end.DH872686|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(38,126,532 - 38,127,656)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttagagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcctatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagttttatcatac
agatctttcacttccttagtagagtcacgcagatattttatatatttgtg
actatgagaggtgtgtttccctaattcttctca
gaattcctatactagaagtgcagcctgggagaatcagaaagttcttgcca
ttcacaaatgtgttactagattgaagattaattgcatcagatcctgttca
ataaaaatgagaagaaaactgaagaacaagccaaattacgggagacttaa
ataggattgtttataggaaagtgaaggacattgttatgagtaagataatt
gatttgggatatgttgaaaaataaggagaggttaaaaaataaagtaaata
tattttcaaggttgggaaagtttgagagtaacagttaaagcagtggttat
caacctccctgctgctatgaaccattaataaagttcttcatattttgttg
acctccaactttaaaattatttttgttactccattttgctaccttatatc
tgtaattttgttacttttatgaatcataaagtaaatatatttgttttgag
atagtcttagacaacccctgtgaaagtcacatttctacctccaagggata
gtaacatatagattgagaaacactgagttaaaaagacctctgatactgag
aaactgaaattctaaagataaagagactgggagcatgagaaggactttta
aaggtttaactatgatttatttaagtgcaagggtgtccatagccatatgt
actctatgacaagggtgatacgttagtagaccaccacaatttctgacatt
gccaccatttgtatttacaaaaagaagctttataagttgacattaggagg
atgcaaatttatatcatataaagttaaataacaaaatattcttcaagatt
ctttgatacaatcaattatgagattgtaccatcataaatactttactttc
tgaggaaagaatattaacattgagagttgatacagggaagcagttgttct
atttgtattctccagtaaaatctatggaggccaaccagagtgttttctag
catgatcgctgaaatagagacaaggaaacatgccagtgtgtggcctgaga
cctctttctaagacctctgtttatttcactagagtatgattttatgtgaa
agaatccagccaagttgattcatggtcaagtttggcttggaaatatcacc
tcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-047P13.b_49_591 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      |||||||||||||||| |||| ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATAGGCACAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| |||||||| || | |||||| |||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr4_38126532_38127656
seq2: B6Ng01-047P13.g_69_1174 (reverse)

seq1  AAGTGA----ATATTTCATAAGCCCAAACTTTGACTCATTTGAATCAACT  46
      ||||||    |||||||  ||| |||||| ||||| ||  ||||||||||
seq2  AAGTGAGGTGATATTTC-CAAG-CCAAAC-TTGAC-CA--TGAATCAACT  44

seq1  TTGCTGATTTCTTTTCAAACAT-AAATCATACTCCTAGTTGTATATAAAC  95
      | ||||  ||||||    |||| |||||||||| |||||   | ||||||
seq2  TGGCTGGATTCTTT---CACATAAAATCATACT-CTAGT--GAAATAAAC  88

seq1  AGAGGTCTGTAGGAAGAGTTCCTCAGGCCACACAACTGGCAATGTTTCCT  145
      |||||||| ||| ||||| | |||||||||||| |||||| |||||||||
seq2  AGAGGTCT-TAGAAAGAGGT-CTCAGGCCACAC-ACTGGC-ATGTTTCCT  134

seq1  TGTTCCTTCTATTTCCAGCGATCATGCTAGAAAACCACTCTGGTTGGCCT  195
      |||    ||||||| ||||||||||||||||||| |||||||||||||||
seq2  TGT---CTCTATTT-CAGCGATCATGCTAGAAAA-CACTCTGGTTGGCCT  179

seq1  CCATAGATTTTAACTGGAGAATACAAAATAGAACAACTTGCTTCCCTGTA  245
      ||||||||||| |||||||||||| |||||||||||| ||||||||||||
seq2  CCATAGATTTT-ACTGGAGAATAC-AAATAGAACAAC-TGCTTCCCTGTA  226

seq1  TCAACTCTCAATGTTAATATTCTTTCCTCAG-AAGTAAAGTATTTATGAT  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TCAACTCTCAATGTTAATATTCTTTCCTCAGAAAGTAAAGTATTTATGA-  275

seq1  TGTTACAATCTCATAATTGATTGTATCAAAGAATCTTGAAGAATATTTTG  344
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAATCTCATAATTGATTGTATCAAAGAATCTTGAAGAATATTTTG  325

seq1  TTATTTAACTTTATATGATATAAATTTGCATCCTCCTAATGTCAACTTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAACTTTATATGATATAAATTTGCATCCTCCTAATGTCAACTTAT  375

seq1  AAAGCTTCTTTTTGTAAATACAAATGGTGGCAATGTCAGAAATTGTGGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTTTTTGTAAATACAAATGGTGGCAATGTCAGAAATTGTGGTG  425

seq1  GTCTACTAACGTATCACCCTTGTCATAGAGTACATATGGCTATGGACACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAACGTATCACCCTTGTCATAGAGTACATATGGCTATGGACACC  475

seq1  CTTGCACTTAAATAAATCATAGTTAAACCTTTAAAAGTCCTTCTCATGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTTAAATAAATCATAGTTAAACCTTTAAAAGTCCTTCTCATGCT  525

seq1  CCCAGTCTCTTTATCTTTAGAATTTCAGTTTCTCAGTATCAGAGGTCTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTCTTTATCTTTAGAATTTCAGTTTCTCAGTATCAGAGGTCTTT  575

seq1  TTAACTCAGTGTTTCTCAATCTATATGTTACTATCCCTTGGAGGTAGAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCAGTGTTTCTCAATCTATATGTTACTATCCCTTGGAGGTAGAAA  625

seq1  TGTGACTTTCACAGGGGTTGTCTAAGACTATCTCAAAACAAATATATTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTCACAGGGGTTGTCTAAGACTATCTCAAAACAAATATATTTA  675

seq1  CTTTATGATTCATAAAAGTAACAAAATTACAGATATAAGGTAGCAAAATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGATTCATAAAAGTAACAAAATTACAGATATAAGGTAGCAAAATG  725

seq1  GAGTAACAAAAATAATTTTAAAGTTGGAGGTCAACAAAATATGAAGAACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACAAAAATAATTTTAAAGTTGGAGGTCAACAAAATATGAAGAACT  775

seq1  TTATTAATGGTTCATAGCAGCAGGGAGGTTGATAACCACTGCTTTAACTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATGGTTCATAGCAGCAGGGAGGTTGATAACCACTGCTTTAACTG  825

seq1  TTACTCTCAAACTTTCCCAACCTTGAAAATATATTTACTTTATTTTTTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCAAACTTTCCCAACCTTGAAAATATATTTACTTTATTTTTTAA  875

seq1  CCTCTCCTTATTTTTCAACATATCCCAAATCAATTATCTTACTCATAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTATTTTTCAACATATCCCAAATCAATTATCTTACTCATAACA  925

seq1  ATGTCCTTCACTTTCCTATAAACAATCCTATTTAAGTCTCCCGTAATTTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTCACTTTCCTATAAACAATCCTATTTAAGTCTCCCGTAATTTG  975

seq1  GCTTGTTCTTCAGTTTTCTTCTCATTTTTATTGAACAGGATCTGATGCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCTTCAGTTTTCTTCTCATTTTTATTGAACAGGATCTGATGCAA  1025

seq1  TTAATCTTCAATCTAGTAACACATTTGTGAATGGCAAGAACTTTCTGATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTCAATCTAGTAACACATTTGTGAATGGCAAGAACTTTCTGATT  1075

seq1  CTCCCAGGCTGCACTTCTAGTATAGGAATTC  1125
      |||||||||||||||||||||||||||||||
seq2  CTCCCAGGCTGCACTTCTAGTATAGGAATTC  1106