BAC Information

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BAC

Clone NameB6Ng01-047P20
Chromosome6 (Build37)
Map Location 113,379,176 - 113,525,753
singlet/doubletdoublet
Overlap geneCidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2
Upstream geneCav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3
Downstream gene4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047P20.bB6Ng01-047P20.g
ACCDH872695DH872696
length1,076183
definitionDH872695|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P20, 5' end.DH872696|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,524,668 - 113,525,753)(113,379,176 - 113,379,358)
sequence
gaattccaggacagccagggctatacagagaaaccctatctcgaaaaaac
cgaaaaaaaaatagtaataataaaaaattttaaaaaataaaaacaaaaac
agggctggtgagatggctcagtgggtaagagcacccgactgctcttccga
aggtccggagttcaaatcccagcaaccacatggtggctcacaaccatccg
taacgagatctgactccctcttctggagtgtctgagaacagctacagtgt
acttacatataaccaataaataaatctttaaaaaaaaaaaacaaaaaaaa
caaaaaaaaacaaaaacagattgtgttatatttctatccttattttaaga
accaggttgaagagaaggctcagcagctaagagcatgctctgctcttgca
gacaaactgagtttggttcctagcaccctcatcaggctgttcacaaccac
ctgcaactccagctccggaagatccaatgcccacttctaaactctgaggg
cacagacagagatatacataatttttaaaatgtaagaagcaaaataaaag
gaccactgattctttaaaggccgatcaagggcgtggatgtagctcagttg
gtagagtgcttgcctatcccgcatgaagctctaggtttcatccccagaag
caggtctagaggcccaggtctgtaatgctagtactcaggaagtaggggaa
gggtgatgagccacactcgcagcgcgtgttcaaggcacatctatgagatc
ctgtttaaaagcctcaccaaatgctatagcttccatggtatccccaatat
tccagttcacagtgtgctcacttttaaccacataaagagacttcagattt
gttctgttagctaatcagtgagcccctaatttttcaaactgctcagtaac
agtggcttctgtaagagtcagtggggcttacaaaaaatagaaaagaagga
aagcacccaggacggctgtatccatttcttccttctccctcgggaatact
cagagtgaatgcaagcacgcactcattgcaacacttccacgacacacttc
ccacactaccacgcgagagccgtgca
agtttggtgaagtatgaaggatggtatacacccataatcttaatactcaa
aaggcagagacaggggaatctcagctagctcaaggctagctggtctgtac
ataaggatgaatgccagccactactgcatagcaagaccaccctgtctcta
gaaaataggggtgtgggagtggggaaggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113524668_113525753
seq2: B6Ng01-047P20.b_46_1121 (reverse)

seq1  TGCACGCGCTCTTTGCGTGGTGAGTGTGGGGAGGTGGTGTCGTGGGAGTG  50
      |||||| |||| | ||||||| |||||||| ||   ||||||||| ||||
seq2  TGCACG-GCTC-TCGCGTGGT-AGTGTGGGAAG--TGTGTCGTGGAAGTG  45

seq1  TGTGCAATGAGTGCGTGCTTGCATTCACTTCTGAGTATTCCCGAAGGGAA  100
      | |||||||||||||||||||||||||| |||||||||||||||  || |
seq2  T-TGCAATGAGTGCGTGCTTGCATTCAC-TCTGAGTATTCCCGA--GGGA  91

seq1  GAAGGGAAGGAAATGGATACAGCCCTTCCTGGGTGCTTT-CTTCTTTTCT  149
      |||||  | ||||||||||||| || ||||||||||||| ||||||||||
seq2  GAAGG--AAGAAATGGATACAG-CCGTCCTGGGTGCTTTCCTTCTTTTCT  138

seq1  ATTTTCTTGTAAG-CCCACTGACTCTTACAG-AGCCACTGTTACTGAGCA  197
      ||||| ||||||| ||||||||||||||||| ||||||||||||||||||
seq2  ATTTT-TTGTAAGCCCCACTGACTCTTACAGAAGCCACTGTTACTGAGCA  187

seq1  GTTTGAAAAATTAGGGGCTCACTGATTAGCTAACAGAACAAATCTGAAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAAATTAGGGGCTCACTGATTAGCTAACAGAACAAATCTGAAGT  237

seq1  CTCTTTATGTGGTTAAAAGTGAGCACACTGTGAACTGGAATATTGGGGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATGTGGTTAAAAGTGAGCACACTGTGAACTGGAATATTGGGGAT  287

seq1  ACCATGGAAGCTATAGCATTTGGTGAGGCTTTTAAACAGGATCTCATAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAAGCTATAGCATTTGGTGAGGCTTTTAAACAGGATCTCATAGA  337

seq1  TGTGCCTTGAACACGCGCTGCGAGTGTGGCTCATCACCCTTCCCCTACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTGAACACGCGCTGCGAGTGTGGCTCATCACCCTTCCCCTACTT  387

seq1  CCTGAGTACTAGCATTACAGACCTGGGCCTCTAGACCTGCTTCTGGGGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTACTAGCATTACAGACCTGGGCCTCTAGACCTGCTTCTGGGGAT  437

seq1  GAAACCTAGAGCTTCATGCGGGATAGGCAAGCACTCTACCAACTGAGCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTAGAGCTTCATGCGGGATAGGCAAGCACTCTACCAACTGAGCTA  487

seq1  CATCCACGCCCTTGATCGGCCTTTAAAGAATCAGTGGTCCTTTTATTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACGCCCTTGATCGGCCTTTAAAGAATCAGTGGTCCTTTTATTTTG  537

seq1  CTTCTTACATTTTAAAAATTATGTATATCTCTGTCTGTGCCCTCAGAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACATTTTAAAAATTATGTATATCTCTGTCTGTGCCCTCAGAGTT  587

seq1  TAGAAGTGGGCATTGGATCTTCCGGAGCTGGAGTTGCAGGTGGTTGTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGGGCATTGGATCTTCCGGAGCTGGAGTTGCAGGTGGTTGTGAA  637

seq1  CAGCCTGATGAGGGTGCTAGGAACCAAACTCAGTTTGTCTGCAAGAGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATGAGGGTGCTAGGAACCAAACTCAGTTTGTCTGCAAGAGCAG  687

seq1  AGCATGCTCTTAGCTGCTGAGCCTTCTCTTCAACCTGGTTCTTAAAATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTCTTAGCTGCTGAGCCTTCTCTTCAACCTGGTTCTTAAAATAA  737

seq1  GGATAGAAATATAACACAATCTGTTTTTGTTTTTTTTTGTTTTTTTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAATATAACACAATCTGTTTTTGTTTTTTTTTGTTTTTTTTGTT  787

seq1  TTTTTTTTTTAAAGATTTATTTATTGGTTATATGTAAGTACACTGTAGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAAGATTTATTTATTGGTTATATGTAAGTACACTGTAGCT  837

seq1  GTTCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGT  887

seq1  GAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCA  937

seq1  GTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGTTTTTGTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGTTTTTGTTTT  987

seq1  TATTTTTTAAAATTTTTTATTATTACTATTTTTTTTTCGGTTTTTTCGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAAATTTTTTATTATTACTATTTTTTTTTCGGTTTTTTCGAG  1037

seq1  ATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1076

seq1: chr6_113379176_113379358
seq2: B6Ng01-047P20.g_75_257

seq1  AGTTTGGTGAAGTATGAAGGATGGTATACACCCATAATCTTAATACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTGAAGTATGAAGGATGGTATACACCCATAATCTTAATACTCAA  50

seq1  AAGGCAGAGACAGGGGAATCTCAGCTAGCTCAAGGCTAGCTGGTCTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGACAGGGGAATCTCAGCTAGCTCAAGGCTAGCTGGTCTGTAC  100

seq1  ATAAGGATGAATGCCAGCCACTACTGCATAGCAAGACCACCCTGTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGATGAATGCCAGCCACTACTGCATAGCAAGACCACCCTGTCTCTA  150

seq1  GAAAATAGGGGTGTGGGAGTGGGGAAGGAAGGA  183
      |||||||||||||||||||||||||||||||||
seq2  GAAAATAGGGGTGTGGGAGTGGGGAAGGAAGGA  183